BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC144389.3 - phase: 0
(488 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC210175 weakly similar to UP|Q93XC9 (Q93XC9) Armadillo repeat-c... 256 1e-68
TC224289 99 6e-21
BE608072 weakly similar to GP|22830929|db P0466H10.27 {Oryza sat... 89 4e-18
BG239196 80 3e-15
TC221005 weakly similar to UP|Q9LM76 (Q9LM76) F2D10.27, partial ... 68 1e-11
BU547957 similar to GP|22830929|db P0466H10.27 {Oryza sativa (ja... 66 3e-11
TC218078 similar to UP|Q71VM2 (Q71VM2) Plakoglobin/armadillo/bet... 49 4e-06
TC206834 similar to UP|Q944I3 (Q944I3) AT3g01400/T13O15_4, parti... 37 0.026
TC217992 36 0.044
TC232087 weakly similar to UP|Q6K5K9 (Q6K5K9) Avr9/Cf-9 rapidly ... 34 0.17
TC230034 32 0.64
TC228634 weakly similar to GB|AAP21292.1|30102748|BT006484 At1g6... 31 1.1
BQ453726 31 1.4
AI494961 similar to GP|14091078|gb subtilisin-like protein {Glyc... 29 4.1
TC232128 weakly similar to UP|Q9FXF6 (Q9FXF6) F1N18.15 protein, ... 29 4.1
BE660772 28 7.1
TC203959 28 9.2
TC235021 similar to UP|Q7XA91 (Q7XA91) At3g27960, partial (23%) 28 9.2
>TC210175 weakly similar to UP|Q93XC9 (Q93XC9) Armadillo repeat-containing
protein (Fragment), partial (12%)
Length = 910
Score = 256 bits (655), Expect = 1e-68
Identities = 146/284 (51%), Positives = 185/284 (64%)
Frame = +2
Query: 205 ETLLQMLKSSSDKEEIVSAMGIIRYLPKVQQITQWLYDAGALSIICKYVQDGTDKDLQKS 264
+ LL ++++S D E +V+AMGII LP+ +TQWL D+GAL I + D K
Sbjct: 2 KVLLTIIEASDDAEAMVTAMGIISKLPQESHMTQWLLDSGALKTILTCLTDQHKHVSHKK 181
Query: 265 KLVENSAGALCRFTVPTNLEWQKSAAEIGIITVLVQLLESGTAQTKQLAALSLTQFSKSS 324
+++ENS ALCRFTV TNLEWQK A GII VLVQLL SGT TKQ AA+S+ QFS+SS
Sbjct: 182 QVIENSVQALCRFTVSTNLEWQKRVALEGIIPVLVQLLHSGTPFTKQNAAISIKQFSESS 361
Query: 325 NELSSPMPKRKGFWCFSAQTEAGCLVHGGVCIVESSFCLLEADAVGALAKTLGDSDLGVC 384
LS P+ K F C E GC H G C VESSFC+L+A+A+ L + L D D G
Sbjct: 362 YRLSEPIKKPSIFKCCLVAKETGCPAHLGTCSVESSFCILQANALEPLVRMLADQDDGTR 541
Query: 385 ENSLDALLTLIDGEKLQSGSKVLADENVIPLIIRFLGSPSPGLQEKSLNALERIFRLLEF 444
E SL+ALLTL+D E QSGSKVLA+ N I +I+ P P LQE+ L ALERIF+L +
Sbjct: 542 EASLNALLTLVDSEAPQSGSKVLANSNAIAPMIQLSSVPIPRLQERILIALERIFQLDDV 721
Query: 445 KQKYGASAQMPLVDLTQRGNGSIKSLAARILAHLNVLHDQSSYF 488
+ KY A M LV++TQ + ++SLAA+ LA L L+ QSSYF
Sbjct: 722 RNKYKVVATMHLVEITQGKDSRMRSLAAKCLAQLGELNKQSSYF 853
>TC224289
Length = 544
Score = 98.6 bits (244), Expect = 6e-21
Identities = 55/132 (41%), Positives = 82/132 (61%)
Frame = +1
Query: 357 VESSFCLLEADAVGALAKTLGDSDLGVCENSLDALLTLIDGEKLQSGSKVLADENVIPLI 416
V S+FCL++A AV L + L D++ V E +L AL TL+ E + G +A + + I
Sbjct: 4 VNSTFCLVKAGAVSPLIQLLEDTEREVVEAALHALSTLLQDEIWEGGVNSIAKLSGVQAI 183
Query: 417 IRFLGSPSPGLQEKSLNALERIFRLLEFKQKYGASAQMPLVDLTQRGNGSIKSLAARILA 476
I+ L +QEK++ LERIF++ E + KYG SAQ+ L+DL Q+ + +KS A++LA
Sbjct: 184 IKSLQVEDAKVQEKAIWMLERIFKVAEHRLKYGESAQVVLIDLAQKSDSRLKSTVAKVLA 363
Query: 477 HLNVLHDQSSYF 488
L +L QSSYF
Sbjct: 364 ELELLQSQSSYF 399
>BE608072 weakly similar to GP|22830929|db P0466H10.27 {Oryza sativa
(japonica cultivar-group)}, partial (20%)
Length = 473
Score = 89.0 bits (219), Expect = 4e-18
Identities = 62/159 (38%), Positives = 89/159 (54%), Gaps = 3/159 (1%)
Frame = +3
Query: 225 GIIRYLP-KVQQITQWLYDAGALSIICKYVQDGTDKDLQ-KSKLVENSAGALCRFTVPTN 282
GI+ LP +++T L A L I+ + GT + KS L+E+ AG RFT ++
Sbjct: 3 GILSNLPVSDKKVTDALKRANLLPILVSIMDLGTGSNSPAKSILMESIAGIAIRFTSSSD 182
Query: 283 LEWQKSAAEIGIITVLVQLLESGTAQTKQLAALSLTQFSKSSNELSSPMPKRKGFW-CFS 341
+ Q +A+ G+I +LV+LL SG+A TK AA +L Q S++S L RK W C +
Sbjct: 183 KKLQLLSAKHGVIALLVKLLSSGSAITKLKAATALGQLSQNSPSLRR---SRKSRWLCVA 353
Query: 342 AQTEAGCLVHGGVCIVESSFCLLEADAVGALAKTLGDSD 380
+A C VH G C V S+FCL++A AV L + L D D
Sbjct: 354 PSVDAYCEVHDGYCFVSSTFCLIKAGAVSPLIQILEDKD 470
>BG239196
Length = 405
Score = 79.7 bits (195), Expect = 3e-15
Identities = 50/135 (37%), Positives = 70/135 (51%)
Frame = +3
Query: 240 LYDAGALSIICKYVQDGTDKDLQKSKLVENSAGALCRFTVPTNLEWQKSAAEIGIITVLV 299
L + G L I ++ G K + EN+ AL RFT PTN+E Q+ + GI +LV
Sbjct: 9 LIELGGLDAIISILKTG------KMEAKENALTALFRFTDPTNIESQRDLVKRGIYPLLV 170
Query: 300 QLLESGTAQTKQLAALSLTQFSKSSNELSSPMPKRKGFWCFSAQTEAGCLVHGGVCIVES 359
L +G+ K AA + S S+ +L + +PK G W F + C HG VC V +
Sbjct: 171 DFLNTGSVTAKARAAAFIGDLSMSTPKL-TVVPKPTGCWLFRSSRVPLCSAHGSVCRVNT 347
Query: 360 SFCLLEADAVGALAK 374
+FCLLEA A+ L K
Sbjct: 348 TFCLLEAKALPGLIK 392
>TC221005 weakly similar to UP|Q9LM76 (Q9LM76) F2D10.27, partial (22%)
Length = 645
Score = 67.8 bits (164), Expect = 1e-11
Identities = 48/158 (30%), Positives = 81/158 (50%), Gaps = 6/158 (3%)
Frame = +2
Query: 337 FWCFSAQT--EAGCLVHGGVCIVESSFCLLEADAVGALAKTLGDSDLGVCENSLDALLTL 394
F CFS + C +H G+C ++ +FCL E AV L L +++ V E +L AL TL
Sbjct: 53 FSCFSKKPVITGSCRLHRGICSLKETFCLYEGQAVLKLVGLLDHTNVNVVEAALAALSTL 232
Query: 395 I-DGEKLQSGSKVLAD-ENVIPLIIRFLGSPSPGLQEKSLNALERIFRL--LEFKQKYGA 450
I DG ++ G +L + E V P++ L + L+ +++ A+ER+ R + ++
Sbjct: 233 IEDGVDIEQGVAILCEAEGVKPILDVLLEKRTDTLRRRAVWAVERLLRTDDIAYEVSGDQ 412
Query: 451 SAQMPLVDLTQRGNGSIKSLAARILAHLNVLHDQSSYF 488
+ LVD Q G+ + A R L H++ + + S F
Sbjct: 413 NVSTALVDAFQHGDYRTRQTAERALKHVDKIPNFSGIF 526
>BU547957 similar to GP|22830929|db P0466H10.27 {Oryza sativa (japonica
cultivar-group)}, partial (18%)
Length = 658
Score = 66.2 bits (160), Expect = 3e-11
Identities = 45/157 (28%), Positives = 82/157 (51%)
Frame = -2
Query: 1 MIMVKMLAEMESTDRNKEILFDSGILPPLLRLVSHNDVEMKLVALKALQNLSTLKKNGLE 60
++M L+ + TD +K L G + PL+R+ + +E KL AL ALQNLS+L +N
Sbjct: 447 ILMATTLSRLVLTDHSKLTLGQDGAIEPLVRMFNSGKLESKLSALNALQNLSSLTENVRR 268
Query: 61 MIQQGAARKLFGILFQHSLPSSSLSEHVAPIIMQLAASTISQDTQTPVSLLESDEDVFNL 120
+I G L +LF + +L E + I+ ++A +++T + L + + +L
Sbjct: 267 LIGTGIVGSLLQLLFSVTSVLMTLREPASAILARIA------ESETVLVNLGVAQQILSL 106
Query: 121 FSLVSYTVPDVRQYIIQTFYSLCHSPSASYIRNKLRE 157
+L S P ++ ++++ S+ P AS R K++E
Sbjct: 105 LNLSS---PVIQGHLLEALNSIASLPCASKERRKMKE 4
>TC218078 similar to UP|Q71VM2 (Q71VM2)
Plakoglobin/armadillo/beta-catenin-like protein
(Fragment), partial (88%)
Length = 1310
Score = 49.3 bits (116), Expect = 4e-06
Identities = 57/246 (23%), Positives = 108/246 (43%), Gaps = 11/246 (4%)
Frame = +3
Query: 202 KCIETLLQMLKSSSDKEEIVSAMGIIRYLPKVQQITQWLYDAGALSIICKYVQDGTDKDL 261
+ + L+ ML+ S + + + ++ K ++ + +AGAL I +++
Sbjct: 279 QAVGPLVSMLRVDSPESHEPALLALLNLAVKDEKNKINIVEAGALEPIISFLKS------ 440
Query: 262 QKSKLVENSAGALCRFTVPTNLEWQKSAAEIGIITVLVQLLESGTAQTKQLAALSLTQFS 321
Q L E++ +L + + + SA G+I +LVQ+L G+ Q K A ++L+ S
Sbjct: 441 QNLNLQESATASLLTLSASSTNKPIISAC--GVIPLLVQILRDGSHQAKADAVMALSNLS 614
Query: 322 KSSNELS-----SPMPKR----KGFWCFSAQTEAGCLVHGGVCIVESSFCLLEADAVGAL 372
+N LS +P+P K S E C + + + L ++ G L
Sbjct: 615 THTNNLSIILETNPIPYMVDLLKTCKKSSKTAEKCCALIESLVDYDEGRTALTSEEGGVL 794
Query: 373 A--KTLGDSDLGVCENSLDALLTLIDGEKLQSGSKVLADENVIPLIIRFLGSPSPGLQEK 430
A + L L E+++ ALLT+ ++ + +L E VIP ++ +P Q K
Sbjct: 795 AVVEVLESGTLQSREHAVGALLTMCQSDRCKYREPILR-EGVIPGLLELTVQGTPKSQSK 971
Query: 431 SLNALE 436
+ L+
Sbjct: 972 ARTLLQ 989
Score = 32.7 bits (73), Expect = 0.38
Identities = 62/297 (20%), Positives = 120/297 (39%), Gaps = 11/297 (3%)
Frame = +3
Query: 47 ALQNLSTLKKNGLEMIQQGAARKLFGILFQHSLPSSSLSEHVAPIIMQLAASTISQDTQT 106
A++ L +G ++ AAR + + LS+ V P++ L +
Sbjct: 162 AVRRALQLLNSGQPDLRLQAARDIRRLTKTSQRCRRQLSQAVGPLVSMLRVDSPESHEPA 341
Query: 107 PVSLLE-SDEDVFNLFSLVSY-TVPDVRQYIIQTFYSLCHSPSASYIR------NK--LR 156
++LL + +D N ++V + + ++ +L S +AS + NK +
Sbjct: 342 LLALLNLAVKDEKNKINIVEAGALEPIISFLKSQNLNLQESATASLLTLSASSTNKPIIS 521
Query: 157 ECPSVLVLVKLFENESLSLRASAVKLFSCLVESCDEDAILKHVNQ-KCIETLLQMLKSSS 215
C + +LV++ + S +A AV S L + +I+ N + LL+ K SS
Sbjct: 522 ACGVIPLLVQILRDGSHQAKADAVMALSNLSTHTNNLSIILETNPIPYMVDLLKTCKKSS 701
Query: 216 DKEEIVSAMGIIRYLPKVQQITQWLYDAGALSIICKYVQDGTDKDLQKSKLVENSAGALC 275
E A+ I + + T + G + + + ++ GT LQ E++ GAL
Sbjct: 702 KTAEKCCAL-IESLVDYDEGRTALTSEEGGVLAVVEVLESGT---LQSR---EHAVGALL 860
Query: 276 RFTVPTNLEWQKSAAEIGIITVLVQLLESGTAQTKQLAALSLTQFSKSSNELSSPMP 332
++++ G+I L++L GT +++ A L +S S P
Sbjct: 861 TMCQSDRCKYREPILREGVIPGLLELTVQGTPKSQSKARTLLQLLRESPYPRSEIQP 1031
>TC206834 similar to UP|Q944I3 (Q944I3) AT3g01400/T13O15_4, partial (89%)
Length = 1740
Score = 36.6 bits (83), Expect = 0.026
Identities = 63/317 (19%), Positives = 120/317 (36%)
Frame = +3
Query: 4 VKMLAEMESTDRNKEILFDSGILPPLLRLVSHNDVEMKLVALKALQNLSTLKKNGLEMIQ 63
+++LA+ + +R K + +G + PL+ L+S D++++ + A+ NLS +N +
Sbjct: 297 IRLLAKNKPENRIK--IAKAGAIKPLISLISSPDLQLQEYGVTAILNLSLCDENKEVIAS 470
Query: 64 QGAARKLFGILFQHSLPSSSLSEHVAPIIMQLAASTISQDTQTPVSLLESDEDVFNLFSL 123
GA + P++ L + T + +LL + N ++
Sbjct: 471 SGA---------------------IKPLVRALNSGTATAKENAACALLRLSQVEENKAAI 587
Query: 124 VSYTVPDVRQYIIQTFYSLCHSPSASYIRNKLRECPSVLVLVKLFENESLSLRASAVKLF 183
R I SL S R K ++ L + EN+ +++A +K+
Sbjct: 588 -------GRSGAIPLLVSLLESGG---FRAKKDASTALYSLCTVKENKIRAVKAGIMKVL 737
Query: 184 SCLVESCDEDAILKHVNQKCIETLLQMLKSSSDKEEIVSAMGIIRYLPKVQQITQWLYDA 243
+E + + DK V + L V + L +
Sbjct: 738 --------------------VELMADFESNMVDKSAYV-----VSVLVAVPEARVALVEE 842
Query: 244 GALSIICKYVQDGTDKDLQKSKLVENSAGALCRFTVPTNLEWQKSAAEIGIITVLVQLLE 303
G + ++ + V+ GT + QK +V + ++ ++ A G I LV L +
Sbjct: 843 GGVPVLVEIVEVGTQR--QKEIVV-----VILLQVCEDSVAYRTMVAREGAIPPLVSLSQ 1001
Query: 304 SGTAQTKQLAALSLTQF 320
SGT + KQ S T F
Sbjct: 1002SGTNRAKQKVLFSSTPF 1052
>TC217992
Length = 1097
Score = 35.8 bits (81), Expect = 0.044
Identities = 21/70 (30%), Positives = 32/70 (45%)
Frame = +1
Query: 4 VKMLAEMESTDRNKEILFDSGILPPLLRLVSHNDVEMKLVALKALQNLSTLKKNGLEMIQ 63
V ++ + T + L G+LPPL+RLV V K A +LQ LS + ++
Sbjct: 574 VTVICSLAETGSCENWLVSEGVLPPLIRLVESGSVVGKEKATISLQRLSMSAETARAIVG 753
Query: 64 QGAARKLFGI 73
G R L +
Sbjct: 754 HGGVRPLVAL 783
Score = 32.3 bits (72), Expect = 0.49
Identities = 37/171 (21%), Positives = 67/171 (38%), Gaps = 35/171 (20%)
Frame = +1
Query: 191 DEDAILKHVNQKCIETLLQMLKSSSDK--EEIVSAMGIIRYLPKVQQITQWLYDAGALSI 248
DE ++L + + I L+Q+L ++S + E+ V+ +I L + WL G L
Sbjct: 478 DEKSVLAVLGRSNIAALVQLLTATSPRIREKTVT---VICSLAETGSCENWLVSEGVLPP 648
Query: 249 ICKYVQDGTDKDLQKSKL---------------------------------VENSAGALC 275
+ + V+ G+ +K+ + V +A A
Sbjct: 649 LIRLVESGSVVGKEKATISLQRLSMSAETARAIVGHGGVRPLVALCQTGDSVSQAAAACT 828
Query: 276 RFTVPTNLEWQKSAAEIGIITVLVQLLESGTAQTKQLAALSLTQFSKSSNE 326
+ E +++ AE GI+TV++ LL G + A Q +SNE
Sbjct: 829 LKNISAVPEVRQALAEEGIVTVMINLLNCGILLGSKEHAAECLQNLTASNE 981
>TC232087 weakly similar to UP|Q6K5K9 (Q6K5K9) Avr9/Cf-9 rapidly elicited
protein-like, partial (31%)
Length = 734
Score = 33.9 bits (76), Expect = 0.17
Identities = 27/91 (29%), Positives = 45/91 (48%), Gaps = 1/91 (1%)
Frame = +1
Query: 7 LAEMESTDRNKEILFDSGILPPLLRLVSH-NDVEMKLVALKALQNLSTLKKNGLEMIQQG 65
L + + D NKE++ SG L PL+ L+ + + MK VA A+ N+ + +N ++ G
Sbjct: 52 LFTLSALDSNKELIGKSGALKPLIDLLEEGHPLAMKDVA-SAIFNICVMHENKARAVKDG 228
Query: 66 AARKLFGILFQHSLPSSSLSEHVAPIIMQLA 96
A R + L + HVA ++ LA
Sbjct: 229 AVRVI--------LAKINKQIHVAELLAILA 297
>TC230034
Length = 916
Score = 32.0 bits (71), Expect = 0.64
Identities = 27/95 (28%), Positives = 42/95 (43%), Gaps = 8/95 (8%)
Frame = +1
Query: 14 DRNKEILFDSGILPPLLRLVSHNDVEMKLVALKALQNLSTLKKNGLEMIQQGAARKLFGI 73
+RNK + G +PPL+ L+ + ++ +A A+ LS N + GAA L I
Sbjct: 394 ERNKVKIVTDGAMPPLVELLKMQNSGIRELATAAILTLSAAASNKPIIAASGAAPLLVQI 573
Query: 74 LFQHSLPSS--------SLSEHVAPIIMQLAASTI 100
L S+ +LS +A I L AS +
Sbjct: 574 LKSGSVQGKVDAVTALHNLSTSIANSIELLDASAV 678
>TC228634 weakly similar to GB|AAP21292.1|30102748|BT006484 At1g67530
{Arabidopsis thaliana;} , partial (35%)
Length = 1251
Score = 31.2 bits (69), Expect = 1.1
Identities = 56/263 (21%), Positives = 108/263 (40%), Gaps = 31/263 (11%)
Frame = +2
Query: 204 IETLLQMLKSSSDKEEIVSAMGIIRYLPK-----VQQITQWLYDAGALSIICKYVQDGTD 258
+E L +L+ + + A G + L + V++ + ++GA+++ V + +
Sbjct: 188 VEQLRLLLRDDEEARIFMGANGFVEALLQFLQSAVREGSLMALESGAMALFNLAVNNNRN 367
Query: 259 KDLQKS--------KLVENSAGALCRFTVPTNLEWQKSAAE-IGI---ITVLVQLLESGT 306
K++ S +++ ++ C + NL + A IG+ + L+QLL+S +
Sbjct: 368 KEIMLSAGVLSLLEEMISKTSSYGCTTALYLNLSCLEEAKPMIGVTQAVQFLIQLLQSDS 547
Query: 307 -AQTKQ--LAAL-----------SLTQFSKSSNELSSPMPKRKGFWCFSAQTEAGCLVHG 352
Q KQ L AL L F S S + + W + L++
Sbjct: 548 DVQCKQDSLHALYNLSTVPSNIPCLLSFGIISGLQSLLVGEGDSIW---TEKCVAVLINL 718
Query: 353 GVCIVESSFCLLEADAVGALAKTLGDSDLGVCENSLDALLTLIDGEKLQSGSKVLADENV 412
V + +GALA L +L E ++ LL L + + + S+++ E V
Sbjct: 719 ATSQVGREEIVSTPGLIGALASILDTGELIEQEQAVSCLLILCN--RSEECSEMVLQEGV 892
Query: 413 IPLIIRFLGSPSPGLQEKSLNAL 435
IP ++ + +P QEK+ L
Sbjct: 893 IPALVSISVNGTPRGQEKAQKLL 961
Score = 31.2 bits (69), Expect = 1.1
Identities = 18/66 (27%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Frame = +2
Query: 201 QKCIETLLQMLKSSSDKEEIVSAMGIIRYLPKVQQITQWLYDAGALS---IICKYVQDGT 257
+KC+ L+ + S +EEIVS G+I L + + + A+S I+C ++ +
Sbjct: 689 EKCVAVLINLATSQVGREEIVSTPGLIGALASILDTGELIEQEQAVSCLLILCNRSEECS 868
Query: 258 DKDLQK 263
+ LQ+
Sbjct: 869 EMVLQE 886
>BQ453726
Length = 423
Score = 30.8 bits (68), Expect = 1.4
Identities = 17/35 (48%), Positives = 23/35 (65%)
Frame = +3
Query: 290 AEIGIITVLVQLLESGTAQTKQLAALSLTQFSKSS 324
A + II+ L +LE+G + K LA+LSL FSK S
Sbjct: 237 AFLSIISQLKGILENGELELKTLASLSLLNFSKIS 341
>AI494961 similar to GP|14091078|gb subtilisin-like protein {Glycine max},
partial (15%)
Length = 374
Score = 29.3 bits (64), Expect = 4.1
Identities = 17/34 (50%), Positives = 23/34 (67%)
Frame = +2
Query: 77 HSLPSSSLSEHVAPIIMQLAASTISQDTQTPVSL 110
+S PSSS + AP I+ +AASTI +D Q+ V L
Sbjct: 257 NSGPSSSTVVNDAPWILTVAASTIDRDFQSDVVL 358
>TC232128 weakly similar to UP|Q9FXF6 (Q9FXF6) F1N18.15 protein, partial
(17%)
Length = 746
Score = 29.3 bits (64), Expect = 4.1
Identities = 15/34 (44%), Positives = 21/34 (61%)
Frame = -1
Query: 139 FYSLCHSPSASYIRNKLRECPSVLVLVKLFENES 172
F+S+C S ++ Y + +CPSVL L ENES
Sbjct: 374 FFSICFSGNSGYNLEEFIQCPSVLSL----ENES 285
>BE660772
Length = 826
Score = 28.5 bits (62), Expect = 7.1
Identities = 23/88 (26%), Positives = 43/88 (48%), Gaps = 6/88 (6%)
Frame = +2
Query: 77 HSLPSSSLSEHVAPIIMQLAASTISQDTQTPVSLLESDEDVFNLFSL-VSYTVPDVRQYI 135
+S P S + ++AP I+ + AST+ D + P ++ D VF SL ++PD + +
Sbjct: 218 NSGPGPSTAVNIAPWILTVGASTV--DREFPADVILGDGRVFGGVSLYYGESLPDFKLPL 391
Query: 136 IQ-----TFYSLCHSPSASYIRNKLREC 158
+ + Y S +S ++ K+ C
Sbjct: 392 VYAKDCGSRYCYIGSLESSKVQGKIXVC 475
>TC203959
Length = 1574
Score = 28.1 bits (61), Expect = 9.2
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = -2
Query: 154 KLRECPSVLVLVKLFENESLSLRASAVKLFSCLV 187
K+ PS+ L KL +N SL + +K +CL+
Sbjct: 1327 KVAPAPSISYLPKLLKNVSLEAKEKIIKYVTCLI 1226
>TC235021 similar to UP|Q7XA91 (Q7XA91) At3g27960, partial (23%)
Length = 686
Score = 28.1 bits (61), Expect = 9.2
Identities = 24/88 (27%), Positives = 37/88 (41%), Gaps = 4/88 (4%)
Frame = -1
Query: 78 SLPSSSLSEHVAPIIMQLAASTISQDTQTPVSLLESDEDVFNLFSLVSYTVPDVRQYIIQ 137
+LPS S + ++ L AS +P L S S + VP ++
Sbjct: 440 ALPSRRFSSDLVFLLRTLPASF----NNSPSLLFSS--------STSGFAVPSFSSLVLT 297
Query: 138 TFYSLCHS----PSASYIRNKLRECPSV 161
T+ +C + P ASY+ +L E PSV
Sbjct: 296 TYSRICIASSSLPIASYVAARLLETPSV 213
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.318 0.133 0.370
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,803,413
Number of Sequences: 63676
Number of extensions: 261132
Number of successful extensions: 1348
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 1328
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1346
length of query: 488
length of database: 12,639,632
effective HSP length: 101
effective length of query: 387
effective length of database: 6,208,356
effective search space: 2402633772
effective search space used: 2402633772
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)
Medicago: description of AC144389.3