BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC144345.6 - phase: 0
(360 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC204855 UP|Q93Z89 (Q93Z89) Matrix metalloproteinase MMP2, complete 243 1e-64
TC203267 similar to UP|Q93Z89 (Q93Z89) Matrix metalloproteinase ... 229 1e-60
TC203322 similar to UP|Q93Z89 (Q93Z89) Matrix metalloproteinase ... 210 9e-55
TC223075 UP|MEP1_SOYBN (P29136) Metalloendoproteinase 1 precurso... 136 2e-32
AW596048 weakly similar to GP|16901508|gb| matrix metalloprotein... 122 3e-28
TC232889 weakly similar to UP|O65340 (O65340) Metalloproteinase ... 108 5e-24
TC203384 similar to UP|Q93Z89 (Q93Z89) Matrix metalloproteinase ... 94 7e-20
TC203366 similar to UP|Q93Z89 (Q93Z89) Matrix metalloproteinase ... 86 2e-17
TC203453 similar to UP|Q93Z89 (Q93Z89) Matrix metalloproteinase ... 82 4e-16
TC203588 similar to UP|Q93Z89 (Q93Z89) Matrix metalloproteinase ... 72 5e-13
TC203520 similar to UP|Q93Z89 (Q93Z89) Matrix metalloproteinase ... 69 3e-12
CO985121 69 3e-12
BU762711 59 4e-09
TC212939 weakly similar to UP|Q9ZUJ5 (Q9ZUJ5) T2K10.2 protein, p... 42 6e-04
AW597906 weakly similar to PIR|T00643|T006 zinc metalloproteinas... 36 0.024
BQ741785 29 3.8
TC217746 similar to GB|AAP49515.1|31376377|BT008753 At2g42120 {A... 28 4.9
TC210838 28 4.9
TC230147 28 4.9
TC233549 weakly similar to UP|O22958 (O22958) Expressed protein ... 28 4.9
>TC204855 UP|Q93Z89 (Q93Z89) Matrix metalloproteinase MMP2, complete
Length = 1307
Score = 243 bits (619), Expect = 1e-64
Identities = 160/374 (42%), Positives = 224/374 (59%), Gaps = 15/374 (4%)
Frame = +1
Query: 1 MMKLYQFEFFLFLLIIVNTTLS-SSFPTLSQFAKPLEY-IKKTTEAADYIWDKKIKKLVE 58
MMK +FLL + T LS S + S F K L+ ++K+ D++ I +
Sbjct: 46 MMKSSSHLSAIFLLFFLLTALSPSDGVSFSSFLKQLKQKLEKSPTLKDFLKPTTIGDIYY 225
Query: 59 DLKDKNLKNIKPSLPSQLPKYKGVDQIKQYLSDFGYLEQSGPFNNTLDQETVL-ALKTYQ 117
L N I S P V IK YLS++GY+E SGP +N++DQET++ A+KTYQ
Sbjct: 226 TL---NFTEIFSSEERSAPP---VSLIKDYLSNYGYIESSGPLSNSMDQETIISAIKTYQ 387
Query: 118 RYFNIQQDTL--SEILQHIALPRCGVPDRILKYNLTND-ISFPK-GNQWFPKGTKNLTYG 173
+YF++Q +E LQ ++ RCGVPD + YN T+D +S+PK G++WFP NLTYG
Sbjct: 388 QYFSLQPTGKLNNETLQQMSFLRCGVPDINIDYNFTDDNMSYPKAGHRWFPH--TNLTYG 561
Query: 174 FDPRNKIPLDMTNVFRTALTQWSNTTRVLNFTETKSYDDANIKIGFYNITDDDGINDVAV 233
F P N+IP +MT VFR + +W+ + VLN TET +YD+A+I++GFYN T GI+
Sbjct: 562 FLPENQIPANMTKVFRDSFARWAQASGVLNLTET-TYDNADIQVGFYNFTYL-GIDIEVY 735
Query: 234 GFTFIVLDSTNVKSGFITLDAT-KYWALPTEHRGF-------DLETAAMHQIGHLLGLEH 285
G + I L + K G I LD T K WALP+E+ DLE+AAMH+IGHLLGL+H
Sbjct: 736 GGSLIFLQPDSTKKGVILLDGTNKLWALPSENGRLSWEEGVLDLESAAMHEIGHLLGLDH 915
Query: 286 SSDNKSIMYPTILPSHQKNVQITDSDNLAIQKLYSSSTKANANSDDSSGCFKLFGSSSSL 345
S+ S+MYP ILPSHQ+ VQ++ SD +Q + AN +DS+G G SL
Sbjct: 916 SNKEDSVMYPCILPSHQRKVQLSKSDKTNVQHQF-------ANVEDSAGHVGRLG--VSL 1068
Query: 346 LISLSIVFAFVALL 359
+ +LS+ FA++ LL
Sbjct: 1069ITTLSLGFAYLLLL 1110
>TC203267 similar to UP|Q93Z89 (Q93Z89) Matrix metalloproteinase MMP2,
partial (61%)
Length = 1338
Score = 229 bits (584), Expect = 1e-60
Identities = 138/335 (41%), Positives = 202/335 (60%), Gaps = 21/335 (6%)
Frame = +3
Query: 2 MKLYQFEFFLFLLIIVNTTLSSS----FPTLSQFAKPLEYIKKTTEAADYIWDKKIKKLV 57
MK Y FL LI+++ ++S+S F +L + P K ++ D +K+K+ V
Sbjct: 39 MKPYLRPVFLLFLILLDQSISASAGNFFDSLKKLFGPA-LAKIPSKKEDLKKAEKVKEWV 215
Query: 58 EDLKDK---NLKNIKPSLPSQLPKY---KGVDQIKQYLSDFGYLEQSGPFNNTLDQETVL 111
E +KD ++N PS P++ PK KG+ +K YLS++GY+E S PFNN+ DQET+
Sbjct: 216 EKVKDGVELAIENAPPSPPNEAPKQINIKGLSVVKDYLSEYGYIESSRPFNNSFDQETMS 395
Query: 112 ALKTYQRYFNIQQDTL--SEILQHIALPRCGVPDRILKYNLTND-ISFPK-GNQWFPKGT 167
A+KTYQ++ N+ + +++Q + RCGVPD YN T+D S+PK G++WFP
Sbjct: 396 AIKTYQKFSNLPVTGVPNKQLIQQMLSLRCGVPDVNFDYNFTDDNTSYPKAGHRWFPN-- 569
Query: 168 KNLTYGFDPRNKIPLDMTNVFRTALTQWSNTTRVLNFTETKSYDDANIKIGFYNITDDDG 227
+NLTYGF P N+IP +MT VFR + +W+ + L+ TET +YD+A+I++GFYN T+
Sbjct: 570 RNLTYGFLPENQIPDNMTKVFRDSFARWAQASGTLSLTET-TYDNADIQVGFYNFTNS-- 740
Query: 228 INDVAVGFTFIVLDSTNVKSGFITLDATKYWALPTEHRGF-------DLETAAMHQIGHL 280
G + I L + K G + L+ W LP+E+ DLETAAMHQIGHL
Sbjct: 741 -RIEVYGGSLIFLQPDSSKKGVVLLNGNMGWLLPSENATLSKDDGVLDLETAAMHQIGHL 917
Query: 281 LGLEHSSDNKSIMYPTILPSHQKNVQITDSDNLAI 315
LGL+HS S+MYP IL S Q+ VQ+++SD I
Sbjct: 918 LGLDHSHKEDSVMYPYILSSQQRKVQLSNSDKANI 1022
>TC203322 similar to UP|Q93Z89 (Q93Z89) Matrix metalloproteinase MMP2,
partial (74%)
Length = 1664
Score = 210 bits (534), Expect = 9e-55
Identities = 155/425 (36%), Positives = 220/425 (51%), Gaps = 67/425 (15%)
Frame = +2
Query: 2 MKLYQFEFFLFLLIIVNTTLSSSFPTLSQFAKPLEYIKKT-TEAADYIWDKKIKKL--VE 58
MK Y FL LI+++ + S+S + S+F + +K + ++ + K IKKL VE
Sbjct: 38 MKPYLRPIFLLFLILLDQSTSAS-ASKSRFIEFFSKLKNSFNPKSEELKSKDIKKLPSVE 214
Query: 59 DLKDK-----------NLK---------NIKPSLPSQLPKY------------------- 79
LK K NLK + PSQ PK+
Sbjct: 215 FLKKKHDGVKDFSQEANLKIPTWIGRIIRNRKGKPSQKPKHPPPPPDYRVQLKSDPPAPN 394
Query: 80 --------KGVDQIKQYLSDFGYLEQSGPFNNTLDQETVLALKTYQRYFNIQ--QDTLSE 129
KG+ +K YLSD+GY+E SGPF ++ DQE + A+KTYQ + N+Q +
Sbjct: 395 APPKQINIKGLSVVKDYLSDYGYIESSGPFTDSFDQEIISAIKTYQNFSNLQVTGGLNKQ 574
Query: 130 ILQHIALPRCGVPDRILKYNLTND-ISFPK-GNQWFPKGTKNLTYGFDPRNKIPLDMTNV 187
++Q + RCGVPD YN T+D IS+PK G++WFP +NLTYGF P N+IP +MT V
Sbjct: 575 LIQQMLSIRCGVPDVNFDYNFTDDNISYPKAGHRWFP--NRNLTYGFLPENQIPDNMTKV 748
Query: 188 FRTALTQWSNTTRVLNFTETKSYDDANIKIGFYNITDDDGINDVAVGFTFIVLDSTNVKS 247
FR + +W+ + L+ ET +YD+A+I++GFYN T+ G + I L + K
Sbjct: 749 FRDSFARWAQASGTLSLRET-TYDNADIQVGFYNFTNS---RIEVYGGSTIFLQPDSSKK 916
Query: 248 GFITLDATKYWALPTEHRG-------FDLETAAMHQIGHLLGLEHSSDNKSIMYPTIL-- 298
G + LD W LP+E+ DLET AMHQIGHLLGL+HS S+MYP IL
Sbjct: 917 GVVLLDGNMGWLLPSENATLSKDDGVLDLETVAMHQIGHLLGLDHSHKEDSVMYPYILSS 1096
Query: 299 PSHQKNVQITDSDNLAIQKLYSSS----TKANANSDDSSGCFKLFGSSSSLLISLSIVFA 354
S Q+ VQ+++SD I ++ T NS DS+ G L+ + S+ FA
Sbjct: 1097QSEQRKVQLSNSDKANIHLQFAKHD*DVTSLLPNSHDSAS--HGGGLDVLLVTTFSLGFA 1270
Query: 355 FVALL 359
+V LL
Sbjct: 1271YVLLL 1285
>TC223075 UP|MEP1_SOYBN (P29136) Metalloendoproteinase 1 precursor (SMEP1) ,
complete
Length = 1198
Score = 136 bits (342), Expect = 2e-32
Identities = 91/260 (35%), Positives = 129/260 (49%), Gaps = 19/260 (7%)
Frame = +3
Query: 79 YKGVDQIKQYLSDFGYLEQSGPFNNTLDQETVLALKTYQRYFNIQQDTLSEI--LQHIAL 136
YKG+ +K Y GY+ + F++ D V A+KTYQ+ +N+ +I L+ I
Sbjct: 195 YKGLSNVKNYFHHLGYIPNAPHFDDNFDDTLVSAIKTYQKNYNLNVTGKFDINTLKQIMT 374
Query: 137 PRCGVPDRILKYNLT------NDISFPKGNQWFPKGTKNLTYGFDPRNKIPLDMTNVFRT 190
PRCGVPD I+ N T +D +F K + GT LTY F P ++ +
Sbjct: 375 PRCGVPDIIINTNKTTSFGMISDYTFFKDMPRWQAGTTQLTYAFSPEPRLDDTFKSAIAR 554
Query: 191 ALTQWSNTTRVLNFTETKSYDDANIKIGFYNITDDD-----GINDVAVGFTFIVLDSTNV 245
A ++W+ + F ET SY+ ANIKI F + D G + +G F D
Sbjct: 555 AFSKWTPVVNIA-FQETTSYETANIKILFASKNHGDPYPFDGPGGI-LGHAFAPTD---- 716
Query: 246 KSGFITLDATKYWALPTE------HRGFDLETAAMHQIGHLLGLEHSSDNKSIMYPTILP 299
G DA +YW + FDLE+ A+H+IGHLLGL HSSD ++IMYP+I P
Sbjct: 717 --GRCHFDADEYWVASGDVTKSPVTSAFDLESVAVHEIGHLLGLGHSSDLRAIMYPSI-P 887
Query: 300 SHQKNVQITDSDNLAIQKLY 319
+ V + D I+KLY
Sbjct: 888 PRTRKVNLAQDDIDGIRKLY 947
>AW596048 weakly similar to GP|16901508|gb| matrix metalloproteinase MMP2
{Glycine max}, partial (16%)
Length = 417
Score = 122 bits (306), Expect = 3e-28
Identities = 65/138 (47%), Positives = 92/138 (66%), Gaps = 6/138 (4%)
Frame = +3
Query: 99 GPFNNTLDQETVLALKTYQRYFNIQ--QDTLSEILQHIALPRCGVPDRILKYNLTND-IS 155
G FN+ LDQ TV A+ TYQR+FN++ D +E LQ I+LPRCGVPD Y+++ D +S
Sbjct: 18 GTFNDDLDQATVSAITTYQRFFNLKITGDLTNETLQQISLPRCGVPDMNFDYDVSKDNVS 197
Query: 156 FPKGN---QWFPKGTKNLTYGFDPRNKIPLDMTNVFRTALTQWSNTTRVLNFTETKSYDD 212
+P +WFP +NLTYGF P +KIP + T VFR A +W+ + LN TE +Y+
Sbjct: 198 WPMSRYHRRWFPD--RNLTYGFSPASKIPSNATKVFRDAFARWAGSVPGLNLTE-MNYNS 368
Query: 213 ANIKIGFYNITDDDGIND 230
A++K+GFYN+ D+G+ D
Sbjct: 369 ADLKVGFYNL--DEGVED 416
>TC232889 weakly similar to UP|O65340 (O65340) Metalloproteinase , partial
(38%)
Length = 734
Score = 108 bits (269), Expect = 5e-24
Identities = 80/219 (36%), Positives = 108/219 (48%), Gaps = 19/219 (8%)
Frame = +1
Query: 156 FPKGNQWFPKGTKNLTYGFDPRNKIPLDMTNVFRTALTQWSNTTRVLNFTETKSYDDANI 215
FP +W P+GT+ LTY F P N + + VF A +W+ T L F ET SY A+I
Sbjct: 19 FPGMPRW-PEGTQELTYAFFPGNGLSDAVKGVFAAAFARWAEVTS-LKFRETASYFGADI 192
Query: 216 KIGFYNITDDDGIN-DVAVGFTFIVLDSTNVKSGFITLDATKYW---------ALPTEHR 265
+IGF++ DG D ++G TN G LDA + W ALPT
Sbjct: 193 RIGFFSGDHGDGEPFDGSLGTLAHAFSPTN---GRFHLDAAEDWVVSGDVTRSALPT--- 354
Query: 266 GFDLETAAMHQIGHLLGLEHSSDNKSIMYPTILPSHQKNVQITDSDNLAIQKLYSSSTKA 325
DLE+ A+H+IGHLLGL HSS +++M+PTI S +K V + D IQ LY S+
Sbjct: 355 AVDLESVAVHEIGHLLGLGHSSVEEAVMFPTI-SSRKKKVVLARDDIEGIQFLYGSNPNF 531
Query: 326 NA---------NSDDSSGCFKLFGSSSSLLISLSIVFAF 355
N ++ D C G SS + L+ F F
Sbjct: 532 NGSTATSAPERDASDGGRCLTCVGPSSGVFALLTFAFLF 648
>TC203384 similar to UP|Q93Z89 (Q93Z89) Matrix metalloproteinase MMP2,
partial (32%)
Length = 643
Score = 94.4 bits (233), Expect = 7e-20
Identities = 63/166 (37%), Positives = 88/166 (52%), Gaps = 17/166 (10%)
Frame = +1
Query: 211 DDANIKIGFYNITDDDGINDVAVGFTFIVLDSTNVKSGFITLDATKYWALPTEHRGF--- 267
D+A+I++GFYN T I G + I L + K G + +D W LP+E+
Sbjct: 1 DNADIQVGFYNFTALS-IEVEVYGGSLIFLQPDSSKKGMVLMDGNMGWLLPSENATLSKD 177
Query: 268 ----DLETAAMHQIGHLLGLEHSSDNKSIMYPTILPSHQKNVQITDSD--NLAIQKLYSS 321
DLET AMHQIGHLLGL+HS S+MYP IL S Q+ V++++SD N+ +Q
Sbjct: 178 DGVLDLETVAMHQIGHLLGLDHSHKEDSVMYPYILSSQQRKVKLSNSDKANIHLQFASHD 357
Query: 322 STKANANSDDSSGCFKLFGSSSS--------LLISLSIVFAFVALL 359
S + NS DS S+S L+ + S+ FA+V LL
Sbjct: 358 SDMTSPNSHDSDLTSPNSHDSASHGGRLDVLLVTTFSLGFAYVLLL 495
>TC203366 similar to UP|Q93Z89 (Q93Z89) Matrix metalloproteinase MMP2,
partial (18%)
Length = 576
Score = 86.3 bits (212), Expect = 2e-17
Identities = 52/139 (37%), Positives = 77/139 (54%), Gaps = 5/139 (3%)
Frame = +1
Query: 24 SFPTLSQFAKPLEYIKKTTEAADYIWDKKIKKL--VEDLKDKNLKNIKPSLPSQLPKYKG 81
+FP+ + K EY +K E D + K + L+ K+ P+ P + KG
Sbjct: 163 NFPSRDERKKLREYYEKFREFMDRVEQKTTPPPPPMYRLQPKSPPP-PPNAPPKQINIKG 339
Query: 82 VDQIKQYLSDFGYLEQSGPFNNTLDQETVLALKTYQRY--FNIQQDTLSEILQHIALPRC 139
+ +K YLSD+GY+E SGPFN++ DQE + A+KTYQ + N+ D +++Q I RC
Sbjct: 340 LSVVKDYLSDYGYIESSGPFNDSFDQEIISAIKTYQNFSNLNVTGDLNKQLIQQILSIRC 519
Query: 140 GVPDRILKYNLTND-ISFP 157
GVPD YN T+D S+P
Sbjct: 520 GVPDVNFDYNFTDDNTSYP 576
>TC203453 similar to UP|Q93Z89 (Q93Z89) Matrix metalloproteinase MMP2,
partial (29%)
Length = 622
Score = 82.0 bits (201), Expect = 4e-16
Identities = 54/143 (37%), Positives = 75/143 (51%), Gaps = 17/143 (11%)
Frame = +1
Query: 234 GFTFIVLDSTNVKSGFITLDATKYWALPTEHRGF-------DLETAAMHQIGHLLGLEHS 286
G + I L + K G + +D W LP+E+ DLET AMHQIGHLLGL+HS
Sbjct: 40 GGSLIFLQPDSSKKGVVLMDGNMGWLLPSENATLSKDDGVLDLETVAMHQIGHLLGLDHS 219
Query: 287 SDNKSIMYPTILPSHQKNVQITDSD--NLAIQKLYSSSTKANANSDDSSGCFKLFGSSSS 344
S+MYP IL S Q+ V++++SD N+ +Q S + NS DS S+S
Sbjct: 220 HKEDSVMYPYILSSQQRKVKLSNSDKANIHLQFASHDSDLTSPNSHDSDLTSPNSHDSAS 399
Query: 345 --------LLISLSIVFAFVALL 359
L+ + S+ FA+V LL
Sbjct: 400 HGGRLDVLLVTTFSLGFAYVLLL 468
>TC203588 similar to UP|Q93Z89 (Q93Z89) Matrix metalloproteinase MMP2,
partial (14%)
Length = 514
Score = 71.6 bits (174), Expect = 5e-13
Identities = 46/140 (32%), Positives = 76/140 (53%), Gaps = 25/140 (17%)
Frame = +3
Query: 9 FFLFLLIIVNTTLSSS-------------FPTLSQFAKPLEYIKKTTEAADYIWDKKIKK 55
F +FL+++ +++S+S P++ + K E KKTT+ A+ I K +
Sbjct: 54 FLVFLILLDQSSISASASFNFNGLRNIAKLPSVEKLLKLGEPAKKTTDIANEILKKLFEY 233
Query: 56 LVEDLKDKN-----LKNIKPS----LPSQLPKY---KGVDQIKQYLSDFGYLEQSGPFNN 103
+DL K+ + ++P P+ PK G+ +K YLSD+GY+E SGPFN+
Sbjct: 234 YKDDLPLKSPPPPPMYRLQPKSDLPAPNAPPKQINITGLYIVKDYLSDYGYIESSGPFND 413
Query: 104 TLDQETVLALKTYQRYFNIQ 123
+ DQE + A+KTYQ + N+Q
Sbjct: 414 SFDQEIISAIKTYQNFSNLQ 473
>TC203520 similar to UP|Q93Z89 (Q93Z89) Matrix metalloproteinase MMP2,
partial (13%)
Length = 434
Score = 68.9 bits (167), Expect = 3e-12
Identities = 42/95 (44%), Positives = 58/95 (60%), Gaps = 4/95 (4%)
Frame = +2
Query: 269 LETAAMHQIGHLLGLEHSSDNKSIMYPTILPSHQKNVQITDSD--NLAIQKLYSSSTKAN 326
LET AMHQIGHLLGLEHS S+MYP IL S Q+ V++++SD N+ ++ S +
Sbjct: 2 LETVAMHQIGHLLGLEHSPKEDSVMYPYILSSQQRKVKLSNSDKANIHLEFAKHDSDLTS 181
Query: 327 ANSDDSSGCFKLFGSSSSLLI--SLSIVFAFVALL 359
NS DS+ G +L+ + S+ FA+V LL
Sbjct: 182 PNSHDSAS----HGGRLDVLLVTTFSLGFAYVLLL 274
>CO985121
Length = 535
Score = 68.9 bits (167), Expect = 3e-12
Identities = 48/155 (30%), Positives = 74/155 (46%), Gaps = 13/155 (8%)
Frame = -2
Query: 214 NIKIGFYNITDDDGINDVAVGFTFIVLDSTNVKSGFITLDATKYWALPTE------HRGF 267
+I+IGFY D G + G + + +G LD+ + W +
Sbjct: 534 DIRIGFYG--GDHGDGEPFDGVLGTLAHAXXPTNGMFHLDSAEDWVASGDVTKASLSNAV 361
Query: 268 DLETAAMHQIGHLLGLEHSSDNKSIMYPTILPSHQKNVQITDSDNLAIQKLYSSS----- 322
DLE+ A+H+IGHLLGL HSS +IMYPTI + + V++ + D IQ LY S+
Sbjct: 360 DLESVAVHEIGHLLGLGHSSVEDAIMYPTI-TARTRKVELNEDDIQGIQVLYGSNPNFTG 184
Query: 323 --TKANANSDDSSGCFKLFGSSSSLLISLSIVFAF 355
++ SD S G + G++ + SL + F
Sbjct: 183 TPATSSRESDTSDGGVRHVGATCGVFFSLLLFVVF 79
>BU762711
Length = 428
Score = 58.5 bits (140), Expect = 4e-09
Identities = 30/75 (40%), Positives = 46/75 (61%), Gaps = 4/75 (5%)
Frame = +1
Query: 252 LDATKYWALPTEHR----GFDLETAAMHQIGHLLGLEHSSDNKSIMYPTILPSHQKNVQI 307
LDA + W++ E DLE+ A H+IGH+LGL HSS +++MYP++ P +K V +
Sbjct: 1 LDAAETWSVDFEREESRVAVDLESVATHEIGHVLGLGHSSVKEAVMYPSLSP-RRKKVDL 177
Query: 308 TDSDNLAIQKLYSSS 322
D + +Q LY S+
Sbjct: 178 RIDDVVGVQALYGSN 222
>TC212939 weakly similar to UP|Q9ZUJ5 (Q9ZUJ5) T2K10.2 protein, partial (13%)
Length = 821
Score = 41.6 bits (96), Expect = 6e-04
Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 6/73 (8%)
Frame = +1
Query: 79 YKGVDQIKQYLSDFGYL----EQSGPFNNTLDQETVLALKTYQRYF--NIQQDTLSEILQ 132
Y G+ +K Y FGY+ +S F++ D A++ YQ+ F NI + +
Sbjct: 586 YNGLSNLKNYFHYFGYISNVSSKSSNFSDDFDDALEAAVRAYQKNFNLNITGELDDPTMN 765
Query: 133 HIALPRCGVPDRI 145
I PRCGV D I
Sbjct: 766 QIVKPRCGVADII 804
>AW597906 weakly similar to PIR|T00643|T006 zinc metalloproteinase homolog
F3I6.6 - Arabidopsis thaliana, partial (11%)
Length = 279
Score = 36.2 bits (82), Expect = 0.024
Identities = 27/77 (35%), Positives = 33/77 (42%), Gaps = 16/77 (20%)
Frame = -2
Query: 131 LQHIALPRCGVPDRIL--------KYNLTND--------ISFPKGNQWFPKGTKNLTYGF 174
+ I PRCGV D I K N T+ SF G +P GT+ LTY F
Sbjct: 236 MNQIVKPRCGVADIINGTTTMNSGKTNTTDSPTFHTVAHYSFFDGQPRWPVGTQELTYAF 57
Query: 175 DPRNKIPLDMTNVFRTA 191
DP N + + VF A
Sbjct: 56 DPDNALDDVIKTVFGNA 6
>BQ741785
Length = 437
Score = 28.9 bits (63), Expect = 3.8
Identities = 14/48 (29%), Positives = 24/48 (49%)
Frame = +1
Query: 296 TILPSHQKNVQITDSDNLAIQKLYSSSTKANANSDDSSGCFKLFGSSS 343
++ P+H K V ++ DNLA+ KAN++ + G G S+
Sbjct: 55 SVWPNHAKQVSVSSIDNLAMATFCQPVEKANSSHSFTEGLAHSVGLSN 198
>TC217746 similar to GB|AAP49515.1|31376377|BT008753 At2g42120 {Arabidopsis
thaliana;} , partial (97%)
Length = 1919
Score = 28.5 bits (62), Expect = 4.9
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = -1
Query: 295 PTILPSHQKNVQITDSDNLAIQKLYSSSTKANANSDDSSGCFKLFGSSS 343
P PS + +T SD I L + +++ + SSGC KL G +S
Sbjct: 455 PVSFPSKATTIPVTYSDGKMILPLSLTRPLSSSKTR*SSGCMKLCGLTS 309
>TC210838
Length = 1014
Score = 28.5 bits (62), Expect = 4.9
Identities = 16/63 (25%), Positives = 31/63 (48%)
Frame = +2
Query: 14 LIIVNTTLSSSFPTLSQFAKPLEYIKKTTEAADYIWDKKIKKLVEDLKDKNLKNIKPSLP 73
++ + T + P SQF P+ ++++ +YIW L+ D++ KN + + S P
Sbjct: 281 MLAI*TKCTDEQPLSSQFLNPVAHLEEKRNIVNYIWG-----LI*DMEMKNHQPVPAS*P 445
Query: 74 SQL 76
L
Sbjct: 446 QIL 454
>TC230147
Length = 624
Score = 28.5 bits (62), Expect = 4.9
Identities = 20/84 (23%), Positives = 38/84 (44%)
Frame = -1
Query: 4 LYQFEFFLFLLIIVNTTLSSSFPTLSQFAKPLEYIKKTTEAADYIWDKKIKKLVEDLKDK 63
L QF F +F ++ LS L Y+ + + KK+ + ++ +KDK
Sbjct: 423 LSQFSFPIFFCFLILLLLS------------LNYLLSNQQPSWLKIKKKMDRDLQSVKDK 280
Query: 64 NLKNIKPSLPSQLPKYKGVDQIKQ 87
++KN K + + PK + + K+
Sbjct: 279 HIKNCKSNEKTNKPKRQEIANQKE 208
>TC233549 weakly similar to UP|O22958 (O22958) Expressed protein
(At2g34050/T14G11.17), partial (10%)
Length = 659
Score = 28.5 bits (62), Expect = 4.9
Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Frame = +1
Query: 167 TKNLTYGFDPRNKIPLDMTNVFRTALTQWSNTTRVLNFTE--TKSYDDANIKIGF 219
T GF+P + PLD+ ++ TA N RVL+ + + +++GF
Sbjct: 247 TSKFASGFNPLQRKPLDLGRIWSTAEDLGRNRARVLSLYRQILRGLNSPELRLGF 411
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.318 0.135 0.392
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,818,239
Number of Sequences: 63676
Number of extensions: 193838
Number of successful extensions: 1204
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 1163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1173
length of query: 360
length of database: 12,639,632
effective HSP length: 98
effective length of query: 262
effective length of database: 6,399,384
effective search space: 1676638608
effective search space used: 1676638608
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)
Medicago: description of AC144345.6