TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC143339.10 + phase: 0 /pseudo
         (349 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BI321828                                                              118  5e-27
TC210670 weakly similar to UP|Q8DMU5 (Q8DMU5) Tll0016 protein, p...    49  3e-06
TC222202 weakly similar to GB|AAF68109.1|7715591|AC010793 F20B17...    49  4e-06
TC218649 similar to UP|Q39416 (Q39416) Integral membrane protein...    31  0.73
TC218926 similar to UP|CAZ_DROME (Q27294) RNA-binding protein ca...    28  8.1
TC225729 similar to UP|Q8RVX2 (Q8RVX2) Protease inhibitor precur...    28  8.1

>BI321828 
          Length = 367

 Score =  118 bits (295), Expect = 5e-27
 Identities = 51/97 (52%), Positives = 74/97 (75%)
 Frame = +1

Query: 251 SMYKTIKYPQAWKPSLYMFLSLALNVTTHEGHFYWYTDSKVGPAFSQEFVGIIYAIGAVA 310
           +M+ T++    W P LYM+LSLAL++   EG FYWYTDSK GP+FSQE VG I++I +V 
Sbjct: 1   AMWTTLRSEDVWGPCLYMYLSLALSLDIREGMFYWYTDSKGGPSFSQESVGFIFSISSVG 180

Query: 311 SIIGVLIYHKYLKNYTFRNLVFYAQLLYAISGLLDLM 347
           +++G ++Y   LK+Y FRNL+F+ QL+Y +SG+LDL+
Sbjct: 181 ALLGAILYQYALKDYAFRNLLFWTQLIYGLSGMLDLI 291


>TC210670 weakly similar to UP|Q8DMU5 (Q8DMU5) Tll0016 protein, partial (33%)
          Length = 745

 Score = 48.9 bits (115), Expect = 3e-06
 Identities = 32/140 (22%), Positives = 71/140 (49%), Gaps = 5/140 (3%)
 Frame = +3

Query: 209 GLMAVFPALTIVLGFVIYEKRTTGLHNEKK-----KGVVENVGTTIRSMYKTIKYPQAWK 263
           G+ ++ P +T V+  ++ E+   G              +E+    I  ++ +++    + 
Sbjct: 21  GVTSLLPLITSVVAVLVKEQPMIGTARGLNLLFSGPEFLESSKQRIIQLWGSVRQRSVFL 200

Query: 264 PSLYMFLSLALNVTTHEGHFYWYTDSKVGPAFSQEFVGIIYAIGAVASIIGVLIYHKYLK 323
           P+L++FL  A      +   +++T + +G  F+ EF+G +  + ++AS++GV +Y+ +LK
Sbjct: 201 PTLFIFLWQA--TPQSDSAMFYFTTNSLG--FTPEFLGRVKLVTSIASLLGVGLYNGFLK 368

Query: 324 NYTFRNLVFYAQLLYAISGL 343
           N   R + F   LL +  G+
Sbjct: 369 NVPLRKVFFATTLLGSTLGM 428


>TC222202 weakly similar to GB|AAF68109.1|7715591|AC010793 F20B17.13
           {Arabidopsis thaliana;} , partial (25%)
          Length = 456

 Score = 48.5 bits (114), Expect = 4e-06
 Identities = 22/29 (75%), Positives = 26/29 (88%)
 Frame = +2

Query: 319 HKYLKNYTFRNLVFYAQLLYAISGLLDLM 347
           HK LK+Y FR+LVFYAQLLY ISG+LDL+
Sbjct: 2   HKALKDYPFRDLVFYAQLLYGISGVLDLI 88


>TC218649 similar to UP|Q39416 (Q39416) Integral membrane protein, partial
           (93%)
          Length = 1695

 Score = 31.2 bits (69), Expect = 0.73
 Identities = 16/43 (37%), Positives = 26/43 (60%)
 Frame = +2

Query: 171 GLAPDLQSLCGFCSGSGALLGYLASGFFVHHLGPQGSLGLMAV 213
           GL+    SL G  S  GA++G +ASG    ++G +GSL + ++
Sbjct: 272 GLSVSEFSLFGSLSNVGAMVGAIASGQIAEYIGRKGSLMIASI 400


>TC218926 similar to UP|CAZ_DROME (Q27294) RNA-binding protein cabeza
           (Sarcoma-associated RNA-binding fly homolog) (P19),
           partial (5%)
          Length = 906

 Score = 27.7 bits (60), Expect = 8.1
 Identities = 23/88 (26%), Positives = 36/88 (40%), Gaps = 8/88 (9%)
 Frame = +3

Query: 112 RPYFVVAGVVGTVSATIVAVGG--EVSVVAALMCF------VGVSASLAIADVTIDACIA 163
           RP+   A  V   SA +VAV       +  AL  F      + +  SL++AD  +    +
Sbjct: 93  RPFTAFAAAVAGASAAVVAVSSSDRSFLRNALNSFFSSDLSMPLWGSLSLADSGVSVVES 272

Query: 164 RNSIEVPGLAPDLQSLCGFCSGSGALLG 191
           +     P +    Q LCG      ++LG
Sbjct: 273 KTGTSFPSVLDSSQKLCGIGLRKKSILG 356


>TC225729 similar to UP|Q8RVX2 (Q8RVX2) Protease inhibitor precursor, partial
           (82%)
          Length = 732

 Score = 27.7 bits (60), Expect = 8.1
 Identities = 23/70 (32%), Positives = 32/70 (44%)
 Frame = -1

Query: 202 LGPQGSLGLMAVFPALTIVLGFVIYEKRTTGLHNEKKKGVVENVGTTIRSMYKTIKYPQA 261
           L P+GSL    +  AL ++LG V+  +   G      K + E  GT              
Sbjct: 189 LAPKGSLAYQPL--ALVLLLGGVLC*RPREG------KNIGEGSGTW------------Q 70

Query: 262 WKPSLYMFLS 271
           WKPSL++FLS
Sbjct: 69  WKPSLFLFLS 40


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.325    0.141    0.433 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,865,124
Number of Sequences: 63676
Number of extensions: 222093
Number of successful extensions: 1475
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1467
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1475
length of query: 349
length of database: 12,639,632
effective HSP length: 98
effective length of query: 251
effective length of database: 6,399,384
effective search space: 1606245384
effective search space used: 1606245384
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 59 (27.3 bits)