BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC143337.8 - phase: 0
(97 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC229081 UP|Q8LJR5 (Q8LJR5) Small GTP-binding protein, complete 171 4e-44
TC234046 homologue to UP|Q8LJR5 (Q8LJR5) Small GTP-binding prote... 157 8e-40
TC216443 homologue to UP|Q08150 (Q08150) GTP-binding protein, co... 145 2e-36
TC230402 homologue to UP|Q08150 (Q08150) GTP-binding protein, co... 145 3e-36
TC229481 homologue to UP|Q08149 (Q08149) GTP-binding protein, co... 117 7e-28
TC217862 homologue to UP|Q08149 (Q08149) GTP-binding protein, co... 117 1e-27
BU546249 homologue to PIR|T12097|T12 GTP-binding protein ras-li... 116 2e-27
TC230934 homologue to UP|Q08149 (Q08149) GTP-binding protein, pa... 114 1e-26
TC229210 similar to UP|Q08149 (Q08149) GTP-binding protein, part... 107 1e-24
TC214200 homologue to UP|R11C_LOTJA (Q40193) Ras-related protein... 105 4e-24
TC214158 homologue to UP|R11C_LOTJA (Q40193) Ras-related protein... 104 8e-24
TC216385 homologue to UP|RB1C_ARATH (O04486) Ras-related protein... 95 6e-21
TC216386 homologue to UP|RB1C_ARATH (O04486) Ras-related protein... 92 3e-20
TC206925 homologue to UP|Q39844 (Q39844) Small GTP-binding prote... 88 6e-19
TC206875 UP|Q39844 (Q39844) Small GTP-binding protein (Fragment)... 88 8e-19
AI965335 similar to PIR|T12097|T120 GTP-binding protein ras-lik... 84 9e-18
BU550885 weakly similar to SP|P25766|RGP1 Ras-related protein RG... 84 1e-17
TC216387 homologue to UP|RB1C_ARATH (O04486) Ras-related protein... 81 7e-17
TC221024 similar to UP|Q40196 (Q40196) RAB11F, partial (87%) 78 6e-16
TC206926 similar to UP|Q39844 (Q39844) Small GTP-binding protein... 78 8e-16
>TC229081 UP|Q8LJR5 (Q8LJR5) Small GTP-binding protein, complete
Length = 1478
Score = 171 bits (434), Expect = 4e-44
Identities = 86/97 (88%), Positives = 92/97 (94%)
Frame = +1
Query: 1 MLIGNKSDLRHLVAVPTEDGKSFAERESLYFMETSALEATNVENAFTEVLSQIYRIVSKK 60
MLIGNKSDLRHLVAVPTEDGKSFAE+ESLYFMETSALEATNVENAFTEVLSQIYRIVSK+
Sbjct: 736 MLIGNKSDLRHLVAVPTEDGKSFAEKESLYFMETSALEATNVENAFTEVLSQIYRIVSKR 915
Query: 61 AVEAGEGGSSSSVPSVGQTINVKEDSSVLKRFGCCSN 97
VEAG+ SSS+VPS GQTINVK+DSSVLK+ GCCSN
Sbjct: 916 TVEAGKNASSSAVPSKGQTINVKDDSSVLKKIGCCSN 1026
>TC234046 homologue to UP|Q8LJR5 (Q8LJR5) Small GTP-binding protein,
partial (41%)
Length = 485
Score = 157 bits (397), Expect = 8e-40
Identities = 79/89 (88%), Positives = 84/89 (93%)
Frame = +1
Query: 9 LRHLVAVPTEDGKSFAERESLYFMETSALEATNVENAFTEVLSQIYRIVSKKAVEAGEGG 68
LRHLVAVPTEDGKSFAE+ESLYFMETSALEATNVENAFTEVLSQIYRIVSK+AVEAG
Sbjct: 1 LRHLVAVPTEDGKSFAEKESLYFMETSALEATNVENAFTEVLSQIYRIVSKRAVEAGNNA 180
Query: 69 SSSSVPSVGQTINVKEDSSVLKRFGCCSN 97
SSS+VPS GQTINVK+DSSVLK+ GCCSN
Sbjct: 181SSSAVPSKGQTINVKDDSSVLKKIGCCSN 267
>TC216443 homologue to UP|Q08150 (Q08150) GTP-binding protein, complete
Length = 1277
Score = 145 bits (367), Expect = 2e-36
Identities = 74/97 (76%), Positives = 85/97 (87%)
Frame = +3
Query: 1 MLIGNKSDLRHLVAVPTEDGKSFAERESLYFMETSALEATNVENAFTEVLSQIYRIVSKK 60
ML+GNKSDLRHLVAV TEDGKS+AE+ESLYFMETSALEATNVENAF EVL+QIYRIVSKK
Sbjct: 723 MLVGNKSDLRHLVAVSTEDGKSYAEKESLYFMETSALEATNVENAFAEVLTQIYRIVSKK 902
Query: 61 AVEAGEGGSSSSVPSVGQTINVKEDSSVLKRFGCCSN 97
AVE E G ++SVP+ G+ I++K D S LKR GCCS+
Sbjct: 903 AVEGAENG-TASVPAKGEKIDLKNDVSALKRVGCCSS 1010
>TC230402 homologue to UP|Q08150 (Q08150) GTP-binding protein, complete
Length = 844
Score = 145 bits (366), Expect = 3e-36
Identities = 73/97 (75%), Positives = 85/97 (87%)
Frame = +1
Query: 1 MLIGNKSDLRHLVAVPTEDGKSFAERESLYFMETSALEATNVENAFTEVLSQIYRIVSKK 60
ML+GNKSDLRHLVAV TEDGKS+AE+ESLYFMETSALEATNVENAF EVL+QIYRIVSKK
Sbjct: 451 MLVGNKSDLRHLVAVSTEDGKSYAEKESLYFMETSALEATNVENAFAEVLTQIYRIVSKK 630
Query: 61 AVEAGEGGSSSSVPSVGQTINVKEDSSVLKRFGCCSN 97
AVE E G ++SVP+ G+ I++K D S LK+ GCCS+
Sbjct: 631 AVEGAENG-TASVPAKGEKIDLKNDGSALKKVGCCSS 738
>TC229481 homologue to UP|Q08149 (Q08149) GTP-binding protein, complete
Length = 1427
Score = 117 bits (294), Expect = 7e-28
Identities = 61/98 (62%), Positives = 79/98 (80%), Gaps = 2/98 (2%)
Frame = +3
Query: 1 MLIGNKSDLRHLVAVPTEDGKSFAERESLYFMETSALEATNVENAFTEVLSQIYRIVSKK 60
ML+GNK+DLRHL AV TED +FAERE+ +FMETSALE+ NVENAFTEVL+QIY +VSKK
Sbjct: 471 MLVGNKADLRHLRAVSTEDATTFAERENTFFMETSALESLNVENAFTEVLTQIYHVVSKK 650
Query: 61 AVEAGEGGSSSSVPSVGQTINV--KEDSSVLKRFGCCS 96
A+E G+ +++P GQTIN+ ++D S +K+ GCCS
Sbjct: 651 ALEVGD--DPAALPK-GQTINIGSRDDVSAVKKSGCCS 755
>TC217862 homologue to UP|Q08149 (Q08149) GTP-binding protein, complete
Length = 1149
Score = 117 bits (292), Expect = 1e-27
Identities = 60/98 (61%), Positives = 80/98 (81%), Gaps = 2/98 (2%)
Frame = +2
Query: 1 MLIGNKSDLRHLVAVPTEDGKSFAERESLYFMETSALEATNVENAFTEVLSQIYRIVSKK 60
ML+GNK+DLRHL AV T+D K+FAERE+ +FMETSALE+ NV+NAFTEVL+QIYR+VS+K
Sbjct: 566 MLVGNKADLRHLRAVSTDDAKAFAERENTFFMETSALESLNVDNAFTEVLTQIYRVVSRK 745
Query: 61 AVEAGEGGSSSSVPSVGQTINV--KEDSSVLKRFGCCS 96
+E G+ +++P GQTINV ++D S +K+ GCCS
Sbjct: 746 TLEIGD--DPAALPK-GQTINVGSRDDVSAVKKSGCCS 850
>BU546249 homologue to PIR|T12097|T12 GTP-binding protein ras-like (clone
vfa-ypt3a) - fava bean (fragment), partial (64%)
Length = 693
Score = 116 bits (290), Expect = 2e-27
Identities = 60/98 (61%), Positives = 79/98 (80%), Gaps = 2/98 (2%)
Frame = -1
Query: 1 MLIGNKSDLRHLVAVPTEDGKSFAERESLYFMETSALEATNVENAFTEVLSQIYRIVSKK 60
ML+GNK+DLRHL AV T D K+FAERE+ +FMETSALE+ NV+NAFTEVL+QIYR+VS+K
Sbjct: 579 MLVGNKADLRHLRAVATNDAKAFAERENTFFMETSALESLNVDNAFTEVLTQIYRVVSRK 400
Query: 61 AVEAGEGGSSSSVPSVGQTINV--KEDSSVLKRFGCCS 96
+E G+ +++P GQTINV ++D S +K+ GCCS
Sbjct: 399 TLEIGD--DPAALPK-GQTINVGSRDDVSAVKKSGCCS 295
>TC230934 homologue to UP|Q08149 (Q08149) GTP-binding protein, partial (66%)
Length = 624
Score = 114 bits (284), Expect = 1e-26
Identities = 60/98 (61%), Positives = 79/98 (80%), Gaps = 2/98 (2%)
Frame = +3
Query: 1 MLIGNKSDLRHLVAVPTEDGKSFAERESLYFMETSALEATNVENAFTEVLSQIYRIVSKK 60
ML+GNK+DLRHL AV TE+ +FAERE +FMETSALE+ NVE+AFTEVL+QIY +VSKK
Sbjct: 234 MLVGNKADLRHLRAVSTEETTNFAEREKTFFMETSALESLNVESAFTEVLTQIYHVVSKK 413
Query: 61 AVEAGEGGSSSSVPSVGQTINV--KEDSSVLKRFGCCS 96
A+E G+ +++P GQTINV ++D+S +K+ GCCS
Sbjct: 414 ALEIGD--DPAALPK-GQTINVGSRDDASAVKKDGCCS 518
>TC229210 similar to UP|Q08149 (Q08149) GTP-binding protein, partial (90%)
Length = 962
Score = 107 bits (267), Expect = 1e-24
Identities = 54/99 (54%), Positives = 72/99 (72%), Gaps = 3/99 (3%)
Frame = +3
Query: 1 MLIGNKSDLRHLVAVPTEDGKSFAERESLYFMETSALEATNVENAFTEVLSQIYRIVSKK 60
ML+GNK+DLRHL AV TE+ FAE+ES+YFMETSALE+ NV+NAF EVL+QIY +VS+K
Sbjct: 480 MLVGNKADLRHLRAVSTEEATEFAEKESIYFMETSALESLNVDNAFIEVLTQIYNVVSRK 659
Query: 61 AVEAGEGGSSSSVPSVGQTINV---KEDSSVLKRFGCCS 96
+E + S+ G+TI + +D S +K+ GCCS
Sbjct: 660 TLETVDDDPSTKALPKGETIVIGTKDDDVSAVKKSGCCS 776
>TC214200 homologue to UP|R11C_LOTJA (Q40193) Ras-related protein Rab11C,
complete
Length = 1240
Score = 105 bits (262), Expect = 4e-24
Identities = 55/96 (57%), Positives = 69/96 (71%)
Frame = +3
Query: 1 MLIGNKSDLRHLVAVPTEDGKSFAERESLYFMETSALEATNVENAFTEVLSQIYRIVSKK 60
M+ GNKSDL HL AV +DG++ AERE L F+ETSALEATN+E AF +L++IY IVSKK
Sbjct: 621 MMAGNKSDLSHLRAVSEDDGQALAEREGLSFLETSALEATNIEKAFQTILTEIYHIVSKK 800
Query: 61 AVEAGEGGSSSSVPSVGQTINVKEDSSVLKRFGCCS 96
A+ A E +++P G TINV + S KR GCCS
Sbjct: 801 ALAAQEAAVGTTLPGQGTTINVGDASGNTKR-GCCS 905
>TC214158 homologue to UP|R11C_LOTJA (Q40193) Ras-related protein Rab11C,
complete
Length = 1243
Score = 104 bits (259), Expect = 8e-24
Identities = 55/96 (57%), Positives = 68/96 (70%)
Frame = +3
Query: 1 MLIGNKSDLRHLVAVPTEDGKSFAERESLYFMETSALEATNVENAFTEVLSQIYRIVSKK 60
M+ GNKSDL HL AV +DG++ AERE L F+ETSALEATN+E AF +L++IY IVSKK
Sbjct: 600 MMAGNKSDLSHLRAVSEDDGQALAEREGLSFLETSALEATNIEKAFQTILTEIYHIVSKK 779
Query: 61 AVEAGEGGSSSSVPSVGQTINVKEDSSVLKRFGCCS 96
A+ A E + +P G TINV + S KR GCCS
Sbjct: 780 ALAAQEAAVGTILPGQGTTINVGDASGNTKR-GCCS 884
>TC216385 homologue to UP|RB1C_ARATH (O04486) Ras-related protein Rab11C,
partial (63%)
Length = 644
Score = 94.7 bits (234), Expect = 6e-21
Identities = 49/97 (50%), Positives = 68/97 (69%)
Frame = +3
Query: 1 MLIGNKSDLRHLVAVPTEDGKSFAERESLYFMETSALEATNVENAFTEVLSQIYRIVSKK 60
MLIGNK+DL+HL AV TED + ++E+E L F+ETSALEATNVE AF +L++IYRI+SKK
Sbjct: 183 MLIGNKTDLKHLRAVATEDAQGYSEKEGLSFIETSALEATNVEKAFQTILAEIYRIISKK 362
Query: 61 AVEAGEGGSSSSVPSVGQTINVKEDSSVLKRFGCCSN 97
++ + E S++ G TI V S + CC++
Sbjct: 363 SLSSNEPASANI--KEGMTITVGGPQSNASKPSCCTS 467
>TC216386 homologue to UP|RB1C_ARATH (O04486) Ras-related protein Rab11C,
partial (85%)
Length = 967
Score = 92.4 bits (228), Expect = 3e-20
Identities = 46/82 (56%), Positives = 65/82 (79%)
Frame = +2
Query: 1 MLIGNKSDLRHLVAVPTEDGKSFAERESLYFMETSALEATNVENAFTEVLSQIYRIVSKK 60
MLIGNK+DL+HL AV TED + +AE+E L F+ETSALEATNVENAF +L++IYRI+SKK
Sbjct: 539 MLIGNKTDLKHLRAVATEDAQGYAEKEGLSFIETSALEATNVENAFQTILAEIYRIISKK 718
Query: 61 AVEAGEGGSSSSVPSVGQTINV 82
++ + + ++++ G+TI V
Sbjct: 719 SLSSND--PAANIIKEGKTITV 778
>TC206925 homologue to UP|Q39844 (Q39844) Small GTP-binding protein
(Fragment), partial (95%)
Length = 1111
Score = 88.2 bits (217), Expect = 6e-19
Identities = 49/97 (50%), Positives = 66/97 (67%), Gaps = 2/97 (2%)
Frame = +1
Query: 1 MLIGNKSDLRHLVAVPTEDGKSFAERESLYFMETSALEATNVENAFTEVLSQIYRIVSKK 60
+LIGNKSDL + VPTED K FAE+E L+F+ETSALEATNVE AF VL++I+ I++KK
Sbjct: 628 ILIGNKSDLENQRQVPTEDAKEFAEKEGLFFLETSALEATNVETAFMTVLTEIFNIINKK 807
Query: 61 AVEAGEG-GSSSSVPSVGQTINVKEDS-SVLKRFGCC 95
+ A + G+ +S G+ I V + + KR CC
Sbjct: 808 NLAASDNQGNDNSASLSGKKIIVPGPAQEIPKRSMCC 918
>TC206875 UP|Q39844 (Q39844) Small GTP-binding protein (Fragment), complete
Length = 871
Score = 87.8 bits (216), Expect = 8e-19
Identities = 51/100 (51%), Positives = 65/100 (65%), Gaps = 3/100 (3%)
Frame = +3
Query: 1 MLIGNKSDLRHLVAVPTEDGKSFAERESLYFMETSALEATNVENAFTEVLSQIYRIVSKK 60
+L GNK DL + VPTED K FAE+E L+F+ETSALEATNVE AF VL++IY IV+KK
Sbjct: 402 ILTGNKCDLENQRDVPTEDAKEFAEKEGLFFLETSALEATNVETAFITVLTEIYNIVNKK 581
Query: 61 AVEAGEG-GSSSSVPSVGQTINVKEDSSVL--KRFGCCSN 97
+ A E G+ +S GQ I V + + KR CC +
Sbjct: 582 NLTADENQGNGNSASLSGQKIIVPGPAQEIPAKRNMCCQS 701
>AI965335 similar to PIR|T12097|T120 GTP-binding protein ras-like (clone
vfa-ypt3a) - fava bean (fragment), partial (37%)
Length = 232
Score = 84.3 bits (207), Expect = 9e-18
Identities = 41/66 (62%), Positives = 51/66 (77%)
Frame = +2
Query: 1 MLIGNKSDLRHLVAVPTEDGKSFAERESLYFMETSALEATNVENAFTEVLSQIYRIVSKK 60
ML GNK DLRH AV T+D K+FAER++ + METSALE+ NV AFTEVL+QIYR+ S K
Sbjct: 20 MLAGNKGDLRHWRAVSTDDAKAFAERDNTFIMETSALESLNVHYAFTEVLTQIYRVCSMK 199
Query: 61 AVEAGE 66
+E G+
Sbjct: 200TLEIGD 217
>BU550885 weakly similar to SP|P25766|RGP1 Ras-related protein RGP1
(GTP-binding regulatory protein RGP1). [Rice] {Oryza
sativa}, partial (47%)
Length = 694
Score = 83.6 bits (205), Expect = 1e-17
Identities = 50/108 (46%), Positives = 66/108 (60%), Gaps = 12/108 (11%)
Frame = -2
Query: 1 MLIGNKSDLRHLVAVPTEDGKSFAERESLYFMETSALEATNVENAFTEVLSQIYRIVSKK 60
ML+GNKSDL L AVPTE + FA++E L+F+ETSAL+++NVE+AF +LSQ+YR VS+K
Sbjct: 549 MLVGNKSDLSSLRAVPTEVARDFAQQEGLFFLETSALDSSNVESAFIGLLSQVYRTVSRK 370
Query: 61 --AVEAGEG----------GSSSSVPSVGQTINVKEDSSVLKRFGCCS 96
V+ E G+ VPS E + KRF CCS
Sbjct: 369 HILVDGHESNWDKVNLELEGTKIKVPS-----QEPECQNAKKRFNCCS 241
>TC216387 homologue to UP|RB1C_ARATH (O04486) Ras-related protein Rab11C,
partial (79%)
Length = 661
Score = 81.3 bits (199), Expect = 7e-17
Identities = 39/56 (69%), Positives = 48/56 (85%)
Frame = +2
Query: 1 MLIGNKSDLRHLVAVPTEDGKSFAERESLYFMETSALEATNVENAFTEVLSQIYRI 56
MLIGNK+DL+HL AV TED + +AE+E L F+ETSALEATNVENAF +L++IYRI
Sbjct: 494 MLIGNKTDLKHLRAVATEDAQGYAEKEGLSFIETSALEATNVENAFQTILAEIYRI 661
>TC221024 similar to UP|Q40196 (Q40196) RAB11F, partial (87%)
Length = 769
Score = 78.2 bits (191), Expect = 6e-16
Identities = 42/97 (43%), Positives = 67/97 (68%), Gaps = 1/97 (1%)
Frame = +2
Query: 1 MLIGNKSDLRHLVAVPTEDGKSFAERESLYFMETSALEATNVENAFTEVLSQIYRIVSKK 60
+L+GNKSDL V E+GK FAE E L FMETSAL+ NV+ AF E++++I+ I+S+K
Sbjct: 299 VLVGNKSDLDQSRQVEREEGKVFAETEELCFMETSALQNLNVDEAFLEMITKIHDIISQK 478
Query: 61 AVEAGEGGSSSSVPSVGQTINVKEDSSVLKRFG-CCS 96
++E G++ ++PS G+ I++ ++ + K+ CCS
Sbjct: 479 SLETKMNGTALNLPS-GKEIHIADEVTATKQAKYCCS 586
>TC206926 similar to UP|Q39844 (Q39844) Small GTP-binding protein
(Fragment), partial (36%)
Length = 510
Score = 77.8 bits (190), Expect = 8e-16
Identities = 42/83 (50%), Positives = 54/83 (64%), Gaps = 2/83 (2%)
Frame = +3
Query: 15 VPTEDGKSFAERESLYFMETSALEATNVENAFTEVLSQIYRIVSKKAVEAGEGGSSSSVP 74
VPTED K FAE+E L+F+ETSALEATNVE AF VL++I+ IV+KK + AG+ + S
Sbjct: 12 VPTEDAKEFAEKEGLFFLETSALEATNVETAFMTVLTEIFNIVNKKNLAAGDNQGNGSAA 191
Query: 75 SVG--QTINVKEDSSVLKRFGCC 95
S+ Q I + KR CC
Sbjct: 192SLSGKQIIVPGTAQEIPKRSMCC 260
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.310 0.127 0.336
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,262,157
Number of Sequences: 63676
Number of extensions: 25290
Number of successful extensions: 140
Number of sequences better than 10.0: 88
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of query: 97
length of database: 12,639,632
effective HSP length: 73
effective length of query: 24
effective length of database: 7,991,284
effective search space: 191790816
effective search space used: 191790816
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 51 (24.3 bits)
Medicago: description of AC143337.8