BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC142526.10 + phase: 0
(401 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BU550695 277 5e-75
TC226144 weakly similar to UP|Q803P8 (Q803P8) Wu:fb74a06 protein... 255 2e-68
BM143473 184 8e-47
TC225233 homologue to UP|O65462 (O65462) Receptor like protein (... 41 0.001
TC207925 similar to UP|O65462 (O65462) Receptor like protein (Fr... 40 0.001
TC206504 similar to UP|Q9SVI4 (Q9SVI4) ES43 like protein (Fragme... 40 0.002
BF325205 31 1.1
TC217162 31 1.1
TC229028 similar to UP|Q84XI2 (Q84XI2) Glycosyl hydrolase, parti... 31 1.1
TC225598 similar to UP|Q84TG4 (Q84TG4) At5g26830/F2P16_90, parti... 30 1.9
BE822695 29 3.3
BU760701 similar to GP|19881113|gb| tegument protein UL95 {chimp... 29 3.3
BF596684 29 3.3
TC232609 29 4.3
TC227655 similar to UP|Q9SC41 (Q9SC41) Translocon Tic40 precurso... 29 4.3
TC218817 similar to UP|O04237 (O04237) Transcription factor, par... 29 4.3
TC221228 similar to UP|Q93V55 (Q93V55) Male sterility 1 protein,... 28 5.6
TC230380 similar to GB|AAO64866.1|29028974|BT005931 At4g29000 {A... 28 5.6
TC205178 similar to GB|AAN13491.1|23170948|AE003688 CG6584-PE {D... 28 5.6
BU765032 28 7.4
>BU550695
Length = 684
Score = 277 bits (709), Expect = 5e-75
Identities = 139/185 (75%), Positives = 154/185 (83%), Gaps = 4/185 (2%)
Frame = -1
Query: 220 DTSYNSPKIDVAQASVGSESISNRAGLPPGGSCN----SSTCTEGASLHVNCLLGVNIVA 275
DTS SPK+D QA+V S+SI + L G +CN S+ CT+ LHVNCLL VNI+
Sbjct: 681 DTSCCSPKVDDVQATVDSKSIXDGKSLSQGENCNGSMASNQCTKSTDLHVNCLLSVNIIT 502
Query: 276 ASPVIHGKAMFLSKNWRDALCKCKNCLEYYHQKRIAFLLDKEDSIVEYEKMAKQKREEKL 335
SPV+ GK MFLSKNWR ALCKC NCLE+Y QK+IAFLLDKEDSI EYE+MAKQKREEKL
Sbjct: 501 VSPVLPGKPMFLSKNWRLALCKCNNCLEFYEQKKIAFLLDKEDSIAEYEQMAKQKREEKL 322
Query: 336 QQQEGAELSLFNKLGHVEKVEILKGIEDMKDGLRTFLESADSSKPISAADIHQFFDDIKN 395
QQQEGAELS FNKLGHVEKVEILKGIE+MKDGLR FLESADSSKPI+AAD+HQFFDDIKN
Sbjct: 321 QQQEGAELSFFNKLGHVEKVEILKGIEEMKDGLRAFLESADSSKPITAADVHQFFDDIKN 142
Query: 396 KRRRV 400
KRRRV
Sbjct: 141 KRRRV 127
>TC226144 weakly similar to UP|Q803P8 (Q803P8) Wu:fb74a06 protein, partial
(18%)
Length = 647
Score = 255 bits (652), Expect = 2e-68
Identities = 110/119 (92%), Positives = 117/119 (97%)
Frame = +3
Query: 13 EADLVLGGDEGRECTYNKGYMKRQAIFSCITCTPDGNAGVCTACSLSCHDGHQIVELWTK 72
EADLVLGGD+G+ECTY+KGYMKRQAIFSC+TCTPDGNAGVCTACSLSCHDGHQIVELWTK
Sbjct: 291 EADLVLGGDDGKECTYSKGYMKRQAIFSCLTCTPDGNAGVCTACSLSCHDGHQIVELWTK 470
Query: 73 RNFRCDCGNSKFGEFYCKIFPSKDIENVENSYNHNFKGLYCTCARPYPDPDAEEQIEMI 131
RNFRCDCGNSKFGEFYCKIFP+KD+ENVENSYNHNFKG YCTC RPYPDPDAEEQ+EMI
Sbjct: 471 RNFRCDCGNSKFGEFYCKIFPNKDVENVENSYNHNFKGSYCTCGRPYPDPDAEEQVEMI 647
>BM143473
Length = 423
Score = 184 bits (466), Expect = 8e-47
Identities = 89/140 (63%), Positives = 108/140 (76%), Gaps = 4/140 (2%)
Frame = +3
Query: 150 SDEIPRDEEGEPLYEDFMCKACSEVCFFLKLYPEVILVAGKQPNATAQVSKDKGILEDTP 209
S EIP+D+EGEP YE+F+CKACS VCFFLKLYPE I AGKQP+AT Q+SKDKG+LED P
Sbjct: 3 SAEIPKDDEGEPTYEEFICKACSHVCFFLKLYPEKIWAAGKQPDATVQISKDKGVLEDMP 182
Query: 210 STCGFEKPLGDTSYNSPKIDVAQASVGSESISNRAGLPPGGSCN----SSTCTEGASLHV 265
STCG EKP +TS +SPK+D AQA+V S+SIS+ L G +CN S+ CT+ LHV
Sbjct: 183 STCGSEKPTCNTSCSSPKVDDAQATVDSKSISDGKSLSQGENCNGSMASNQCTKSIDLHV 362
Query: 266 NCLLGVNIVAASPVIHGKAM 285
NCLLGVNI+ +PV+ GK M
Sbjct: 363 NCLLGVNIITVNPVLPGKPM 422
>TC225233 homologue to UP|O65462 (O65462) Receptor like protein (Fragment),
partial (41%)
Length = 598
Score = 40.8 bits (94), Expect = 0.001
Identities = 23/87 (26%), Positives = 40/87 (45%)
Frame = +1
Query: 86 EFYCKIFPSKDIENVENSYNHNFKGLYCTCARPYPDPDAEEQIEMIQCCLCEDWFHEEHL 145
++YC+ + + ++ + +YC C PY D M+QC C+DW+H +
Sbjct: 13 DYYCRF----EYKAATGAFTPDRVAVYCKCEMPYNPDDL-----MVQCEGCKDWYHPACM 165
Query: 146 GLESSDEIPRDEEGEPLYEDFMCKACS 172
G+ EE + L + F+C CS
Sbjct: 166 GMTI-------EEAKKL-DHFVCSECS 222
>TC207925 similar to UP|O65462 (O65462) Receptor like protein (Fragment),
partial (92%)
Length = 1280
Score = 40.4 bits (93), Expect = 0.001
Identities = 23/87 (26%), Positives = 40/87 (45%)
Frame = +3
Query: 86 EFYCKIFPSKDIENVENSYNHNFKGLYCTCARPYPDPDAEEQIEMIQCCLCEDWFHEEHL 145
++YC+ + + ++ + +YC C PY D M+QC C+DW+H +
Sbjct: 546 DYYCRF----EYKAATGAFTPDRVAVYCKCEMPYNPDDL-----MVQCEGCKDWYHPACV 698
Query: 146 GLESSDEIPRDEEGEPLYEDFMCKACS 172
G+ EE + L + F+C CS
Sbjct: 699 GMTI-------EEAKKL-DHFVCSECS 755
>TC206504 similar to UP|Q9SVI4 (Q9SVI4) ES43 like protein (Fragment), partial
(73%)
Length = 1050
Score = 39.7 bits (91), Expect = 0.002
Identities = 24/87 (27%), Positives = 39/87 (44%)
Frame = +3
Query: 86 EFYCKIFPSKDIENVENSYNHNFKGLYCTCARPYPDPDAEEQIEMIQCCLCEDWFHEEHL 145
+F+C+ + + ++N + +YC C PY D M+QC C DWFH +
Sbjct: 366 DFFCRF----EYNSSTGAFNPDRVAVYCKCEMPYNPDDL-----MVQCEGCTDWFHPACI 518
Query: 146 GLESSDEIPRDEEGEPLYEDFMCKACS 172
+ EE + L + F C+ CS
Sbjct: 519 DMTV-------EEAKRL-DHFFCENCS 575
>BF325205
Length = 425
Score = 30.8 bits (68), Expect = 1.1
Identities = 13/23 (56%), Positives = 17/23 (73%)
Frame = +1
Query: 231 AQASVGSESISNRAGLPPGGSCN 253
+Q S+ S SI+N+A P GGSCN
Sbjct: 316 SQGSISSASITNQAADPHGGSCN 384
>TC217162
Length = 902
Score = 30.8 bits (68), Expect = 1.1
Identities = 13/23 (56%), Positives = 17/23 (73%)
Frame = +3
Query: 231 AQASVGSESISNRAGLPPGGSCN 253
+Q S+ S SI+N+A P GGSCN
Sbjct: 366 SQGSISSASITNQAADPHGGSCN 434
>TC229028 similar to UP|Q84XI2 (Q84XI2) Glycosyl hydrolase, partial (20%)
Length = 898
Score = 30.8 bits (68), Expect = 1.1
Identities = 22/63 (34%), Positives = 27/63 (41%), Gaps = 5/63 (7%)
Frame = +3
Query: 25 ECTYNKGYM-----KRQAIFSCITCTPDGNAGVCTACSLSCHDGHQIVELWTKRNFRCDC 79
ECTYN + KR A S DG G + +L+C G + W KR RC
Sbjct: 318 ECTYNIQMLVANTSKRPASTSSTARLSDGFYGTHSLETLACGVGIEQKSSWFKRIHRCFA 497
Query: 80 GNS 82
G S
Sbjct: 498 GKS 506
>TC225598 similar to UP|Q84TG4 (Q84TG4) At5g26830/F2P16_90, partial (59%)
Length = 1582
Score = 30.0 bits (66), Expect = 1.9
Identities = 14/32 (43%), Positives = 18/32 (55%)
Frame = +3
Query: 124 AEEQIEMIQCCLCEDWFHEEHLGLESSDEIPR 155
+EEQ+E Q CL + WFH + EIPR
Sbjct: 474 SEEQLEFHQLCL*DIWFHV*AEAFNEAREIPR 569
>BE822695
Length = 595
Score = 29.3 bits (64), Expect = 3.3
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +3
Query: 87 FYCKIFPSKDIENVENSYNHNFKGLYC 113
+Y +PSK IEN +SY N +G+YC
Sbjct: 18 YYTFFYPSKLIENNIHSY*ANTQGVYC 98
>BU760701 similar to GP|19881113|gb| tegument protein UL95 {chimpanzee
cytomegalovirus} [Chimpanzee cytomegalovirus], partial
(5%)
Length = 444
Score = 29.3 bits (64), Expect = 3.3
Identities = 15/49 (30%), Positives = 26/49 (52%)
Frame = +1
Query: 306 HQKRIAFLLDKEDSIVEYEKMAKQKREEKLQQQEGAELSLFNKLGHVEK 354
HQ+ F+ K S + + + +QK EEK + E +LF ++ VE+
Sbjct: 112 HQQEEQFIAPKLSSKIMKQALIQQKEEEKEEAPENNAANLFEEVPDVEE 258
>BF596684
Length = 403
Score = 29.3 bits (64), Expect = 3.3
Identities = 18/71 (25%), Positives = 33/71 (46%)
Frame = -2
Query: 259 EGASLHVNCLLGVNIVAASPVIHGKAMFLSKNWRDALCKCKNCLEYYHQKRIAFLLDKED 318
E A + C+ G+ A ++H + S + R A C+C+ + + +AF +
Sbjct: 396 EDALIRDMCMRGITRPPA--IVHIIRVSSSSSPRSASCRCRGVIR*TVRSMLAFTARSKT 223
Query: 319 SIVEYEKMAKQ 329
S V Y K+A +
Sbjct: 222 SAVRYSKIAAE 190
>TC232609
Length = 655
Score = 28.9 bits (63), Expect = 4.3
Identities = 18/41 (43%), Positives = 22/41 (52%)
Frame = -3
Query: 350 GHVEKVEILKGIEDMKDGLRTFLESADSSKPISAADIHQFF 390
GHV KV +LKGI G +S +S IS A+IH F
Sbjct: 653 GHVRKVVVLKGI-----GAEERRDSGGASLVISTANIHGAF 546
>TC227655 similar to UP|Q9SC41 (Q9SC41) Translocon Tic40 precursor, partial
(91%)
Length = 1921
Score = 28.9 bits (63), Expect = 4.3
Identities = 21/66 (31%), Positives = 28/66 (41%)
Frame = -2
Query: 173 EVCFFLKLYPEVILVAGKQPNATAQVSKDKGILEDTPSTCGFEKPLGDTSYNSPKIDVAQ 232
E CF LK +V +AG PN KG EDT + F SY + K + +
Sbjct: 291 EKCFLLKTSLDVASIAGTCPNI-------KGFGEDTRAKLSFSIFFCLPSYGAQKSKLKR 133
Query: 233 ASVGSE 238
+G E
Sbjct: 132 LVIGEE 115
>TC218817 similar to UP|O04237 (O04237) Transcription factor, partial (70%)
Length = 1195
Score = 28.9 bits (63), Expect = 4.3
Identities = 25/83 (30%), Positives = 45/83 (54%), Gaps = 8/83 (9%)
Frame = +3
Query: 315 DKEDSIVEYEKMAKQKREEKLQQQEGAELSLFNKL-GHVEKVEILKGIEDM-------KD 366
DKE ++ EYEK+ +++R + LQ + E + K+ ++++ K I+D+ KD
Sbjct: 585 DKEMTLEEYEKVLEERR-KALQALKTEERKVDTKVFESMQQLSNKKDIDDIFIKLGSDKD 761
Query: 367 GLRTFLESADSSKPISAADIHQF 389
R LE D SK + +I++F
Sbjct: 762 KRRETLEKEDKSK--KSVNINEF 824
>TC221228 similar to UP|Q93V55 (Q93V55) Male sterility 1 protein, partial
(18%)
Length = 972
Score = 28.5 bits (62), Expect = 5.6
Identities = 13/42 (30%), Positives = 20/42 (46%)
Frame = +2
Query: 113 CTCARPYPDPDAEEQIEMIQCCLCEDWFHEEHLGLESSDEIP 154
CTC D + M+ C +CE W H + + + +EIP
Sbjct: 821 CTCGTIEDDGE-----RMVSCDICEIWQHTRCV*IPNDEEIP 931
>TC230380 similar to GB|AAO64866.1|29028974|BT005931 At4g29000 {Arabidopsis
thaliana;} , partial (52%)
Length = 1463
Score = 28.5 bits (62), Expect = 5.6
Identities = 12/32 (37%), Positives = 19/32 (58%)
Frame = +1
Query: 63 GHQIVELWTKRNFRCDCGNSKFGEFYCKIFPS 94
G +I E K+ +C+C +SK + YC+ F S
Sbjct: 22 GFEIKEATPKKQKQCNCKHSKCLKLYCECFAS 117
>TC205178 similar to GB|AAN13491.1|23170948|AE003688 CG6584-PE {Drosophila
melanogaster;} , partial (7%)
Length = 769
Score = 28.5 bits (62), Expect = 5.6
Identities = 9/29 (31%), Positives = 16/29 (55%)
Frame = +1
Query: 161 PLYEDFMCKACSEVCFFLKLYPEVILVAG 189
PL + + C+ CS C+F + P + + G
Sbjct: 517 PLCQ*YFCQICSRKCYFFNMKPYIYSIGG 603
>BU765032
Length = 422
Score = 28.1 bits (61), Expect = 7.4
Identities = 13/42 (30%), Positives = 25/42 (58%)
Frame = -3
Query: 299 KNCLEYYHQKRIAFLLDKEDSIVEYEKMAKQKREEKLQQQEG 340
KN LE++H+K +AFL K+ S+ + ++ + + + Q G
Sbjct: 339 KNSLEFHHKKEMAFLNLKKPSLRVFHEVRRILHKTQRQSNYG 214
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.319 0.137 0.424
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,430,814
Number of Sequences: 63676
Number of extensions: 403702
Number of successful extensions: 1919
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 1906
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1913
length of query: 401
length of database: 12,639,632
effective HSP length: 99
effective length of query: 302
effective length of database: 6,335,708
effective search space: 1913383816
effective search space used: 1913383816
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)
Medicago: description of AC142526.10