BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC142506.2 + phase: 1 /partial
(261 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC217508 similar to UP|Q6W2J1 (Q6W2J1) VDAC3.1, complete 437 e-123
TC226511 similar to UP|Q6W2J2 (Q6W2J2) VDAC2.1, complete 220 4e-58
TC204556 homologue to UP|Q6W2J5 (Q6W2J5) VDAC1.1, complete 220 4e-58
TC214669 homologue to UP|Q6W2J3 (Q6W2J3) VDAC1.3, complete 214 2e-56
TC217509 similar to UP|Q6W2J1 (Q6W2J1) VDAC3.1, partial (36%) 168 2e-42
TC214640 similar to UP|Q6W2J3 (Q6W2J3) VDAC1.3, partial (72%) 155 2e-38
TC204557 similar to UP|Q6W2J4 (Q6W2J4) VDAC1.2, partial (64%) 139 1e-33
AW310394 similar to GP|9758310|dbj| porin-like protein {Arabidop... 138 2e-33
TC209012 homologue to UP|Q6W2J4 (Q6W2J4) VDAC1.2, partial (49%) 115 2e-26
TC234551 weakly similar to UP|Q6W2J2 (Q6W2J2) VDAC2.1, partial (... 103 6e-23
AW568478 weakly similar to GP|5031279|gb| porin {Prunus armeniac... 102 2e-22
AW704159 weakly similar to PIR|T12558|T12 porin - common ice pla... 97 6e-21
TC209013 homologue to UP|Q6W2J4 (Q6W2J4) VDAC1.2, partial (37%) 87 6e-18
AW132758 weakly similar to PIR|S36454|S36 porin por1 - garden pe... 80 7e-16
AW733991 weakly similar to PIR|S36454|S36 porin por1 - garden pe... 79 2e-15
AI856007 75 3e-14
AW309803 weakly similar to GP|5031279|gb| porin {Prunus armeniac... 69 2e-12
BE331557 weakly similar to GP|5031279|gb|A porin {Prunus armenia... 56 2e-08
AW099857 weakly similar to GP|29367429|gb| porin-like protein {O... 52 2e-07
AW309859 similar to GP|5031279|gb|A porin {Prunus armeniaca}, pa... 52 4e-07
>TC217508 similar to UP|Q6W2J1 (Q6W2J1) VDAC3.1, complete
Length = 1448
Score = 437 bits (1124), Expect = e-123
Identities = 216/261 (82%), Positives = 237/261 (90%)
Frame = +1
Query: 1 LLYKDYNFDHKFSLSIPSSTGLGLTATGLKRDKFFVGDLNTLYKSGNVTVDVKVNTDSNV 60
LLYKDYNFDHKFSLSIP+STGLGL ATGLK+DK FVGD++TLYKSGN TVDVKV+T SN+
Sbjct: 238 LLYKDYNFDHKFSLSIPNSTGLGLIATGLKKDKLFVGDISTLYKSGNTTVDVKVDTYSNI 417
Query: 61 STKVTLNDVSLSHSKKVALSFNIPDHKSGKLDVQYLHPHAAIDSSIGLNPAPKLELSAAI 120
TKVT+ND+ H K ALSFNIPDHKSGKLDVQYLHPHAA+DSSIGLNP+P LELSAAI
Sbjct: 418 YTKVTVNDIL--HGTKAALSFNIPDHKSGKLDVQYLHPHAAVDSSIGLNPSPLLELSAAI 591
Query: 121 GSKDISMGAEVGFDTTSASFSTYNAGIAFNKPDFSATLMLADKGQSLKASYIHYVDRPDG 180
GSKD+ +GAEVGF+TTSASF+ YNAG+AFNKPDFS LMLADKGQ+LKASYIHYVDRPDG
Sbjct: 592 GSKDLCLGAEVGFNTTSASFTKYNAGVAFNKPDFSVALMLADKGQTLKASYIHYVDRPDG 771
Query: 181 LTVAAELAHKLSSSENRFTFGTSQSIDPKTVLKTRFSDDGKAAFQCQRAWRPNSLITLSA 240
TVAAE++H+ SS ENRFT G+SQSIDPKTVLKTRFSDDGKAAFQCQRAWRPNSLITLSA
Sbjct: 772 FTVAAEISHRFSSLENRFTIGSSQSIDPKTVLKTRFSDDGKAAFQCQRAWRPNSLITLSA 951
Query: 241 EYDSKKIIGSPAKFGLALSLK 261
EYDS KI GS KFGLAL+LK
Sbjct: 952 EYDSTKIFGSSTKFGLALALK 1014
>TC226511 similar to UP|Q6W2J2 (Q6W2J2) VDAC2.1, complete
Length = 1208
Score = 220 bits (561), Expect = 4e-58
Identities = 114/261 (43%), Positives = 171/261 (64%)
Frame = +2
Query: 1 LLYKDYNFDHKFSLSIPSSTGLGLTATGLKRDKFFVGDLNTLYKSGNVTVDVKVNTDSNV 60
LL KDYN D K ++S S +G+ LT+T +K+ GD+ LYK N +DVK++T S +
Sbjct: 113 LLTKDYNSDQKLTISSYSISGVALTSTSVKKGGLSTGDVAALYKYKNTIIDVKLDTASTI 292
Query: 61 STKVTLNDVSLSHSKKVALSFNIPDHKSGKLDVQYLHPHAAIDSSIGLNPAPKLELSAAI 120
ST +T NDV L +K +A SF +PD+ SGKL+VQY H HA + +++ L +P +++SA +
Sbjct: 293 STTLTFNDV-LPSTKTIA-SFKLPDYNSGKLEVQYFHDHATLTTAVALKQSPVIDVSATV 466
Query: 121 GSKDISMGAEVGFDTTSASFSTYNAGIAFNKPDFSATLMLADKGQSLKASYIHYVDRPDG 180
G+ I++GAE G+DT+S F+ Y AGI+ +PD SA+++L DKG S+KASY+H++D
Sbjct: 467 GTPTIALGAEAGYDTSSGGFTKYTAGISVTRPDSSASVILGDKGDSIKASYLHHLDLLKK 646
Query: 181 LTVAAELAHKLSSSENRFTFGTSQSIDPKTVLKTRFSDDGKAAFQCQRAWRPNSLITLSA 240
AE+ K S++EN FT G S ++DP T +K R ++ GK Q P S+ T+S
Sbjct: 647 SAAVAEITRKFSTNENIFTVGGSFAVDPLTQVKARLNNHGKLGALLQHEIIPKSVFTVSG 826
Query: 241 EYDSKKIIGSPAKFGLALSLK 261
E D+K + P +FGLA++LK
Sbjct: 827 EIDTKALDKKP-RFGLAIALK 886
>TC204556 homologue to UP|Q6W2J5 (Q6W2J5) VDAC1.1, complete
Length = 1312
Score = 220 bits (561), Expect = 4e-58
Identities = 111/261 (42%), Positives = 165/261 (62%)
Frame = +2
Query: 1 LLYKDYNFDHKFSLSIPSSTGLGLTATGLKRDKFFVGDLNTLYKSGNVTVDVKVNTDSNV 60
LL+KDY+ D KF+++ S TG+ +TA+G ++ + F+ D+NT K+ N+T D+KV+TDSN+
Sbjct: 173 LLFKDYHSDQKFTITTYSPTGVAITASGTRKSELFLADVNTQLKNKNITTDIKVDTDSNL 352
Query: 61 STKVTLNDVSLSHSKKVALSFNIPDHKSGKLDVQYLHPHAAIDSSIGLNPAPKLELSAAI 120
T +T+N+ + K SF +PD +SGK++VQYLH +A I +S+GL P + S I
Sbjct: 353 FTTITVNEPA--PGLKAIFSFKVPDQRSGKVEVQYLHDYAGISTSVGLTANPIVNFSGVI 526
Query: 121 GSKDISMGAEVGFDTTSASFSTYNAGIAFNKPDFSATLMLADKGQSLKASYIHYVDRPDG 180
G+ +++GA++ FDT + NAG++F K D A+L L DKG +L A+Y H V+
Sbjct: 527 GTNVLALGADLSFDTKIGELTKSNAGLSFTKDDLIASLTLNDKGDALNAAYYHVVNPLTN 706
Query: 181 LTVAAELAHKLSSSENRFTFGTSQSIDPKTVLKTRFSDDGKAAFQCQRAWRPNSLITLSA 240
V AE+ H+ S++EN T GT +DP T LK R ++ G+ + Q WRP S T+S
Sbjct: 707 TAVGAEVTHRFSTNENTLTLGTQHQLDPLTTLKARVNNFGRTSALIQHEWRPKSFFTISG 886
Query: 241 EYDSKKIIGSPAKFGLALSLK 261
E D+K I S AK GL L LK
Sbjct: 887 EVDTKAIEKS-AKVGLGLVLK 946
>TC214669 homologue to UP|Q6W2J3 (Q6W2J3) VDAC1.3, complete
Length = 1374
Score = 214 bits (546), Expect = 2e-56
Identities = 109/261 (41%), Positives = 170/261 (64%)
Frame = +3
Query: 1 LLYKDYNFDHKFSLSIPSSTGLGLTATGLKRDKFFVGDLNTLYKSGNVTVDVKVNTDSNV 60
LL+KDY DHKF+++ +STG+ +T+TG+++ + ++ D++T K+ N+T DVKV+T+SN+
Sbjct: 273 LLFKDYQNDHKFTITTYTSTGVEITSTGVRKGEIYLADVSTKVKNKNITTDVKVDTNSNL 452
Query: 61 STKVTLNDVSLSHSKKVALSFNIPDHKSGKLDVQYLHPHAAIDSSIGLNPAPKLELSAAI 120
T +T+++ + K SFN PD KSGK+++QY H +A I++SIGL P + S +
Sbjct: 453 RTTITVDEPA--PGLKTIFSFNFPDQKSGKVELQYQHEYAGINTSIGLTANPVVNFSGVV 626
Query: 121 GSKDISMGAEVGFDTTSASFSTYNAGIAFNKPDFSATLMLADKGQSLKASYIHYVDRPDG 180
G+ +++G ++ FDT S +F+ YNAG+ D A+L L DKG +L ASY H V+
Sbjct: 627 GNNLVAVGTDLSFDTASGNFTKYNAGLNITHADLIASLTLNDKGDNLTASYYHIVNPLTN 806
Query: 181 LTVAAELAHKLSSSENRFTFGTSQSIDPKTVLKTRFSDDGKAAFQCQRAWRPNSLITLSA 240
V AEL+H S +EN TFGT ++DP T+LK+R ++ G+A+ Q W P + +L
Sbjct: 807 TAVGAELSHSFSGNENILTFGTQHALDPLTLLKSRVNNYGRASALIQHDWTPRTRFSLVG 986
Query: 241 EYDSKKIIGSPAKFGLALSLK 261
E D+ I S AK GLA++LK
Sbjct: 987 EVDTGAIEKS-AKVGLAVALK 1046
>TC217509 similar to UP|Q6W2J1 (Q6W2J1) VDAC3.1, partial (36%)
Length = 792
Score = 168 bits (426), Expect = 2e-42
Identities = 82/100 (82%), Positives = 90/100 (90%)
Frame = +1
Query: 162 DKGQSLKASYIHYVDRPDGLTVAAELAHKLSSSENRFTFGTSQSIDPKTVLKTRFSDDGK 221
DKGQ+LKASYI+YVDRPDG TVAAE++H S+ ENRFT G+SQSID KTV+KTRFSDDGK
Sbjct: 1 DKGQTLKASYINYVDRPDGFTVAAEISHSFSTFENRFTIGSSQSIDSKTVVKTRFSDDGK 180
Query: 222 AAFQCQRAWRPNSLITLSAEYDSKKIIGSPAKFGLALSLK 261
AAFQCQRAWRPNSLITLSAEYDS KI GS KFGLAL+LK
Sbjct: 181 AAFQCQRAWRPNSLITLSAEYDSTKIFGSSTKFGLALALK 300
>TC214640 similar to UP|Q6W2J3 (Q6W2J3) VDAC1.3, partial (72%)
Length = 942
Score = 155 bits (392), Expect = 2e-38
Identities = 81/186 (43%), Positives = 114/186 (60%)
Frame = +1
Query: 76 KVALSFNIPDHKSGKLDVQYLHPHAAIDSSIGLNPAPKLELSAAIGSKDISMGAEVGFDT 135
K SFN PD KSGK+++QY H +A I +SIGL P + S +G+ +++G ++ FDT
Sbjct: 43 KTIFSFNFPDQKSGKVELQYQHEYAGISTSIGLTANPVVNFSGVVGNNLVAVGTDLSFDT 222
Query: 136 TSASFSTYNAGIAFNKPDFSATLMLADKGQSLKASYIHYVDRPDGLTVAAELAHKLSSSE 195
TS +F+ YNAG+ D A+L L DKG +L ASY H V+ V AEL+H S +E
Sbjct: 223 TSGNFTKYNAGLNITHADLIASLTLNDKGDNLTASYYHIVNPLTNSAVGAELSHSFSGNE 402
Query: 196 NRFTFGTSQSIDPKTVLKTRFSDDGKAAFQCQRAWRPNSLITLSAEYDSKKIIGSPAKFG 255
N TFGT ++DP T+LK R ++ G+A+ Q W P + +L E D+ I S AK G
Sbjct: 403 NILTFGTQHALDPLTLLKARVNNYGRASALIQHDWTPRTRFSLVGEVDTGAIEKS-AKVG 579
Query: 256 LALSLK 261
LA++LK
Sbjct: 580 LAVALK 597
>TC204557 similar to UP|Q6W2J4 (Q6W2J4) VDAC1.2, partial (64%)
Length = 632
Score = 139 bits (350), Expect = 1e-33
Identities = 66/163 (40%), Positives = 105/163 (63%)
Frame = +2
Query: 1 LLYKDYNFDHKFSLSIPSSTGLGLTATGLKRDKFFVGDLNTLYKSGNVTVDVKVNTDSNV 60
LL+KDY+ D KF+++ S TG+ +T++G K+ FV D+NT K+ N+T D+KV+T SN+
Sbjct: 80 LLFKDYHSDQKFTITTYSPTGVAITSSGTKKGDLFVADVNTQLKNKNITTDIKVDTGSNL 259
Query: 61 STKVTLNDVSLSHSKKVALSFNIPDHKSGKLDVQYLHPHAAIDSSIGLNPAPKLELSAAI 120
T +T+N+ + K SF +PD +SGK++VQYLH +A I +S+GL P + S +
Sbjct: 260 FTTITVNEPA--PGLKTIFSFRVPDQRSGKVEVQYLHDYAGISTSVGLTANPIVNFSGVV 433
Query: 121 GSKDISMGAEVGFDTTSASFSTYNAGIAFNKPDFSATLMLADK 163
G+ +++G +V FDT + +NAG+ F K D A+L + K
Sbjct: 434 GTNVLALGTDVSFDTKIGELTKFNAGLNFTKDDLVASLTVNTK 562
>AW310394 similar to GP|9758310|dbj| porin-like protein {Arabidopsis
thaliana}, partial (10%)
Length = 352
Score = 138 bits (348), Expect = 2e-33
Identities = 75/117 (64%), Positives = 84/117 (71%)
Frame = -1
Query: 145 AGIAFNKPDFSATLMLADKGQSLKASYIHYVDRPDGLTVAAELAHKLSSSENRFTFGTSQ 204
A +A D S L L + Q+ KAS IH VDR L V AE++H+ SS E R T G+SQ
Sbjct: 352 AEVASTNLDSSGALELDHQEQTXKASTIHDVDRSHELLVEAEISHRYSSLEIRLTIGSSQ 173
Query: 205 SIDPKTVLKTRFSDDGKAAFQCQRAWRPNSLITLSAEYDSKKIIGSPAKFGLALSLK 261
SIDPK+VLKTRFS DGK AFQC RAWRPNSLITL AEYDS KI GS KFGLAL+LK
Sbjct: 172 SIDPKSVLKTRFSHDGKDAFQCPRAWRPNSLITLCAEYDSTKIFGSSTKFGLALALK 2
>TC209012 homologue to UP|Q6W2J4 (Q6W2J4) VDAC1.2, partial (49%)
Length = 624
Score = 115 bits (288), Expect = 2e-26
Identities = 60/135 (44%), Positives = 81/135 (59%)
Frame = +2
Query: 127 MGAEVGFDTTSASFSTYNAGIAFNKPDFSATLMLADKGQSLKASYIHYVDRPDGLTVAAE 186
+G +V FDT + +NAG+ F K D A+L + DKG +L ASY H V+R V AE
Sbjct: 2 LGTDVSFDTKIGELTKFNAGLNFTKDDLVASLTVNDKGDALNASYYHAVNRLTNTAVGAE 181
Query: 187 LAHKLSSSENRFTFGTSQSIDPKTVLKTRFSDDGKAAFQCQRAWRPNSLITLSAEYDSKK 246
+ H+ S++EN T GT ++DP T +K R ++ GKA Q WRP S T+S E D+K
Sbjct: 182 VTHRFSTNENTLTLGTQHALDPLTTMKARVNNFGKANALIQHEWRPKSFFTISGEVDTKA 361
Query: 247 IIGSPAKFGLALSLK 261
I S AK GL L+LK
Sbjct: 362 IEKS-AKVGLGLALK 403
>TC234551 weakly similar to UP|Q6W2J2 (Q6W2J2) VDAC2.1, partial (41%)
Length = 467
Score = 103 bits (258), Expect = 6e-23
Identities = 54/136 (39%), Positives = 84/136 (61%)
Frame = +3
Query: 1 LLYKDYNFDHKFSLSIPSSTGLGLTATGLKRDKFFVGDLNTLYKSGNVTVDVKVNTDSNV 60
+L KDYN D +F++S +++GL L +T +K GD+ +K N V+VKV+T+SNV
Sbjct: 60 ILTKDYNSDQRFTISSSTNSGLDLKSTLVKSRGLSSGDVAAEFKYKNKAVNVKVDTESNV 239
Query: 61 STKVTLNDVSLSHSKKVALSFNIPDHKSGKLDVQYLHPHAAIDSSIGLNPAPKLELSAAI 120
T T++DV S K S +PD+ SGK++VQYLH H A +GL+ +P ++ S +
Sbjct: 240 LTTFTVSDVV--PSAKTIASIRLPDYSSGKVEVQYLHEHVAFTLGVGLDRSPVIDFSGTM 413
Query: 121 GSKDISMGAEVGFDTT 136
G+ I+ GAE + T+
Sbjct: 414 GTPSIAFGAETSYSTS 461
>AW568478 weakly similar to GP|5031279|gb| porin {Prunus armeniaca}, partial
(63%)
Length = 526
Score = 102 bits (254), Expect = 2e-22
Identities = 56/162 (34%), Positives = 95/162 (58%)
Frame = +2
Query: 1 LLYKDYNFDHKFSLSIPSSTGLGLTATGLKRDKFFVGDLNTLYKSGNVTVDVKVNTDSNV 60
LL KDY DH F+L+ +ST + +T TG+ + ++ D+ K+ N+T DVK++T S++
Sbjct: 47 LLRKDYLNDHTFTLTTYTSTVVEITLTGVMIGEIYLADVIPNAKNKNITSDVKLDTYSHM 226
Query: 61 STKVTLNDVSLSHSKKVALSFNIPDHKSGKLDVQYLHPHAAIDSSIGLNPAPKLELSAAI 120
T +T+++ + S+ PD KSG+ ++Q H +A I +SIGL P + S +
Sbjct: 227 RTIITVDEPA--PGLNTIFSYYYPDQKSGEAELQNQHEYAGISTSIGLTANPVVNFSGVV 400
Query: 121 GSKDISMGAEVGFDTTSASFSTYNAGIAFNKPDFSATLMLAD 162
G+ ++ G ++ DTTS +F+ Y+AG+ D A+L L D
Sbjct: 401 GNN*VAAGTDLSSDTTSGNFTKYSAGLNITHADLIASLSLND 526
>AW704159 weakly similar to PIR|T12558|T12 porin - common ice plant, partial
(62%)
Length = 526
Score = 97.4 bits (241), Expect = 6e-21
Identities = 50/153 (32%), Positives = 89/153 (57%)
Frame = +2
Query: 1 LLYKDYNFDHKFSLSIPSSTGLGLTATGLKRDKFFVGDLNTLYKSGNVTVDVKVNTDSNV 60
LL+ DY+ + KF+++ S TG+ +TA+G + + F+ D+NT +K+ N+T D+K++T+SN+
Sbjct: 47 LLFNDYHSNQKFTITTYSPTGMAITASGTTKSELFLADVNTQFKNKNMTTDMKLDTNSNL 226
Query: 61 STKVTLNDVSLSHSKKVALSFNIPDHKSGKLDVQYLHPHAAIDSSIGLNPAPKLELSAAI 120
T +T+N+ + K SF + KSGK+ YLH + I +SI L P + S+ I
Sbjct: 227 FTTITINEP--TPGLKAICSFISANQKSGKVKGHYLHDYTGISTSIELTANPIINFSSII 400
Query: 121 GSKDISMGAEVGFDTTSASFSTYNAGIAFNKPD 153
+ +++ + D+ + N G+ F K D
Sbjct: 401 ETNILALNTNLAVDSKIV*CTKCNTGLNFTKDD 499
>TC209013 homologue to UP|Q6W2J4 (Q6W2J4) VDAC1.2, partial (37%)
Length = 716
Score = 87.4 bits (215), Expect = 6e-18
Identities = 47/100 (47%), Positives = 61/100 (61%)
Frame = +1
Query: 162 DKGQSLKASYIHYVDRPDGLTVAAELAHKLSSSENRFTFGTSQSIDPKTVLKTRFSDDGK 221
+KG SL ASY H V+R V AE+ H+ S++EN T GT ++DP T +K R ++ GK
Sbjct: 214 NKGDSLNASYYHTVNRLTNTAVGAEVTHQFSTNENTLTLGTQHALDPLTTVKARVNNLGK 393
Query: 222 AAFQCQRAWRPNSLITLSAEYDSKKIIGSPAKFGLALSLK 261
A Q WRP S T+S E D+K I S AK GL L+LK
Sbjct: 394 ANALIQHEWRPRSFFTISGEVDTKAIEKS-AKVGLGLALK 510
>AW132758 weakly similar to PIR|S36454|S36 porin por1 - garden pea, partial
(49%)
Length = 565
Score = 80.5 bits (197), Expect = 7e-16
Identities = 47/169 (27%), Positives = 90/169 (52%)
Frame = +2
Query: 1 LLYKDYNFDHKFSLSIPSSTGLGLTATGLKRDKFFVGDLNTLYKSGNVTVDVKVNTDSNV 60
+L+ DY+ D + +++ T L +TA+ + + D+NT ++ +T D+ +TDSN
Sbjct: 29 VLFTDYHVDQRLTITTY*PTALAMTASRTTKSELLAADVNTQLENKIITTDLNSDTDSNR 208
Query: 61 STKVTLNDVSLSHSKKVALSFNIPDHKSGKLDVQYLHPHAAIDSSIGLNPAPKLELSAAI 120
T T+ D ++ K ++ PD SG +++ YLH +A I +S+ L ++ S I
Sbjct: 209 LT--TIADNEPAYGLKAIINCKEPDAMSG*VEMTYLHYYAGISTSVWLT*NALVKFSGVI 382
Query: 121 GSKDISMGAEVGFDTTSASFSTYNAGIAFNKPDFSATLMLADKGQSLKA 169
G+ ++GA++ D S + Y A ++ K D A L + ++G ++ A
Sbjct: 383 GTNGHALGADLYIDIRSEE*TIYIAALSCTKYDLIALLTINEQGDAMNA 529
>AW733991 weakly similar to PIR|S36454|S36 porin por1 - garden pea, partial
(49%)
Length = 409
Score = 79.3 bits (194), Expect = 2e-15
Identities = 41/136 (30%), Positives = 76/136 (55%)
Frame = +2
Query: 18 SSTGLGLTATGLKRDKFFVGDLNTLYKSGNVTVDVKVNTDSNVSTKVTLNDVSLSHSKKV 77
S TG G+ TG ++ + V +++T K+ N+T D++V+TD+N+ T +T+N+ +
Sbjct: 8 SHTGAGIATTGTRKREREVAEVDTQTKNKNITTDIEVDTDTNLYTTITVNEPE--PGLEA 181
Query: 78 ALSFNIPDHKSGKLDVQYLHPHAAIDSSIGLNPAPKLELSAAIGSKDISMGAEVGFDTTS 137
SF + D + GK +V+ H + I +S G+ + + G++ ++GAE DT +
Sbjct: 182 MASFKVTDQRPGKGEVED*HEYDGISTSAGVRAKANVNVYGVRGTRAHALGAEADVDTKT 361
Query: 138 ASFSTYNAGIAFNKPD 153
+ NAG++F K D
Sbjct: 362 EEVTKTNAGVSFTKDD 409
>AI856007
Length = 325
Score = 75.1 bits (183), Expect = 3e-14
Identities = 37/102 (36%), Positives = 62/102 (60%)
Frame = -1
Query: 114 LELSAAIGSKDISMGAEVGFDTTSASFSTYNAGIAFNKPDFSATLMLADKGQSLKASYIH 173
+ ++A +G+ I+M AE G+DT+S F+ Y GI+ +PD SA+++ KG S+ AS +H
Sbjct: 307 IHVAATVGTAPIAMCAEAGYDTSSGGFTQYTDGISVTRPDSSASVICGVKGVSINASCLH 128
Query: 174 YVDRPDGLTVAAELAHKLSSSENRFTFGTSQSIDPKTVLKTR 215
++D AE+ K S++E+ T S ++DP T +K R
Sbjct: 127 HMDILKKSAAVAEITRKFSTNESILTVVGSPAVDPLTQVKAR 2
>AW309803 weakly similar to GP|5031279|gb| porin {Prunus armeniaca}, partial
(38%)
Length = 349
Score = 69.3 bits (168), Expect = 2e-12
Identities = 41/106 (38%), Positives = 59/106 (54%)
Frame = -1
Query: 156 ATLMLADKGQSLKASYIHYVDRPDGLTVAAELAHKLSSSENRFTFGTSQSIDPKTVLKTR 215
A+L L DKG +L AS H V+ V AEL+ S EN+ TFGT ++DP T+LK R
Sbjct: 316 ASLTLKDKGATLFASNSHIVNPLXNSAVGAELSQSFSGKENKLTFGTQHALDPLTLLKAR 137
Query: 216 FSDDGKAAFQCQRAWRPNSLITLSAEYDSKKIIGSPAKFGLALSLK 261
++ G A+ Q W P + +L E ++ I AK G +++LK
Sbjct: 136 VNNYGWASVLIQPDWTPKTQFSLVGEVET-GAIKKRAKVGFSVALK 2
>BE331557 weakly similar to GP|5031279|gb|A porin {Prunus armeniaca}, partial
(34%)
Length = 286
Score = 55.8 bits (133), Expect = 2e-08
Identities = 31/95 (32%), Positives = 47/95 (48%)
Frame = +2
Query: 79 LSFNIPDHKSGKLDVQYLHPHAAIDSSIGLNPAPKLELSAAIGSKDISMGAEVGFDTTSA 138
LSFN PD KS + + Y H +A + ++I L + S +G ++ FDTTS
Sbjct: 2 LSFNFPDQKSLLVQLLYQHDYAGLTTTIRLTANTVVNFSGVVGHNLVAAVT*HSFDTTSG 181
Query: 139 SFSTYNAGIAFNKPDFSATLMLADKGQSLKASYIH 173
+ + YNA + D A L L D+G + +S H
Sbjct: 182 NSTKYNARLDITHADLVAYLTLNDRGDTFSSSCYH 286
>AW099857 weakly similar to GP|29367429|gb| porin-like protein {Oryza
sativa (japonica cultivar-group)}, partial (22%)
Length = 419
Score = 52.4 bits (124), Expect = 2e-07
Identities = 30/70 (42%), Positives = 44/70 (62%), Gaps = 1/70 (1%)
Frame = +2
Query: 1 LLYKDYNFDHKFSLSIPSS-TGLGLTATGLKRDKFFVGDLNTLYKSGNVTVDVKVNTDSN 59
+L KDYN D +F+ S S+ +GL L +T +K GD+ +K N V+VKV+T+SN
Sbjct: 23 ILMKDYNSDQRFTFSSSSTNSGLDLKSTLVKSRGLSSGDVAAAFKYKNKAVNVKVDTESN 202
Query: 60 VSTKVTLNDV 69
V T T++DV
Sbjct: 203VLTTFTVSDV 232
>AW309859 similar to GP|5031279|gb|A porin {Prunus armeniaca}, partial (30%)
Length = 274
Score = 51.6 bits (122), Expect = 4e-07
Identities = 27/82 (32%), Positives = 43/82 (51%)
Frame = -1
Query: 169 ASYIHYVDRPDGLTVAAELAHKLSSSENRFTFGTSQSIDPKTVLKTRFSDDGKAAFQCQR 228
ASY H V+ AEL+H +E+ TFGT ++ P TV R ++ G+A+ Q
Sbjct: 271 ASYYHIVNPLTNAADGAELSHSSYGNEHILTFGTQHALYPLTVSTARVNNYGRASALIQP 92
Query: 229 AWRPNSLITLSAEYDSKKIIGS 250
W P + + + E D++ I+ S
Sbjct: 91 VWTPRTRFSRAGEVDTRAIVKS 26
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.314 0.131 0.364
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,612,510
Number of Sequences: 63676
Number of extensions: 111647
Number of successful extensions: 401
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 391
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 392
length of query: 261
length of database: 12,639,632
effective HSP length: 95
effective length of query: 166
effective length of database: 6,590,412
effective search space: 1094008392
effective search space used: 1094008392
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 58 (26.9 bits)
Medicago: description of AC142506.2