BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC142498.2 + phase: 0 /pseudo
(193 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC224861 similar to UP|Q9LUZ4 (Q9LUZ4) Zinc finger transcription... 231 2e-61
TC211980 similar to GB|AAM16218.1|20334714|AY093957 At2g41900/T6... 113 6e-26
BG790659 95 2e-20
TC220991 weakly similar to GB|AAM16218.1|20334714|AY093957 At2g4... 92 1e-19
TC206602 similar to UP|Q9LUZ4 (Q9LUZ4) Zinc finger transcription... 91 4e-19
TC231961 homologue to GB|AAM16218.1|20334714|AY093957 At2g41900/... 91 4e-19
TC225715 similar to GB|AAM16218.1|20334714|AY093957 At2g41900/T6... 90 7e-19
BQ295977 similar to GP|8843784|dbj zinc finger transcription fac... 85 2e-17
TC211182 similar to GB|AAO63406.1|28950965|BT005342 At1g03790 {A... 62 2e-10
AW568218 59 1e-09
TC205752 57 4e-09
TC218822 57 5e-09
TC205753 56 9e-09
AW507825 56 1e-08
TC224208 similar to GB|AAO63406.1|28950965|BT005342 At1g03790 {A... 55 2e-08
TC225717 weakly similar to UP|Q8L3W6 (Q8L3W6) Zinc finger transc... 54 4e-08
AW508155 47 7e-06
TC221753 similar to UP|Q9LVG7 (Q9LVG7) Ankyrin-like protein, par... 37 0.004
TC230807 similar to GB|AAO63323.1|28950799|BT005259 At2g03430 {A... 34 0.048
AW278895 32 0.18
>TC224861 similar to UP|Q9LUZ4 (Q9LUZ4) Zinc finger transcription factor-like
protein (AT5g58620/mzn1_70), partial (42%)
Length = 2560
Score = 231 bits (589), Expect = 2e-61
Identities = 130/228 (57%), Positives = 145/228 (63%), Gaps = 43/228 (18%)
Frame = +1
Query: 7 NSTLLELSAIDDIEAFKREVEEKGYDVNEAGFWYCRKIGSKKMCYEKRTPLMIASLFGSI 66
NS LLELSA DD EAFKREVEEKG DVNEAGFWY R+IGSKKM E RTPLMIASLFGS
Sbjct: 199 NSVLLELSASDDYEAFKREVEEKGLDVNEAGFWYGRRIGSKKMGSETRTPLMIASLFGSA 378
Query: 67 RVVKYII--ETNMVNVNMAIGSENVTALHCAVAGGSKSKFEIVKLLLDAGADVDFLD--- 121
+V+ YI+ + V+VN GS+ TALHCAVAGGS+S EIVKLLLDAGAD + LD
Sbjct: 379 KVLNYILLQKGGGVDVNRVCGSDRATALHCAVAGGSESSLEIVKLLLDAGADAECLDASG 558
Query: 122 --------------------------------------EVVRQKLSVANSKELVAEKKDS 143
E+ Q SV KE KK+
Sbjct: 559 NKPVNLIAPAFDSLSKSRRKALEMFLRGGGERDELMSQEMELQMFSVPEKKEGSDNKKE- 735
Query: 144 GYAIDTSLPDINNGVFVTDEFRMYSFKVKTCSRGYTHDWTECPFVHPG 191
Y +D SLPDINNGV+ TDEFRMY+FKVK CSR Y+HDWTECPFVHPG
Sbjct: 736 -YPVDISLPDINNGVYGTDEFRMYNFKVKPCSRAYSHDWTECPFVHPG 876
>TC211980 similar to GB|AAM16218.1|20334714|AY093957 At2g41900/T6D20.20
{Arabidopsis thaliana;} , partial (21%)
Length = 761
Score = 113 bits (282), Expect = 6e-26
Identities = 56/114 (49%), Positives = 81/114 (70%)
Frame = +3
Query: 8 STLLELSAIDDIEAFKREVEEKGYDVNEAGFWYCRKIGSKKMCYEKRTPLMIASLFGSIR 67
S+LLEL+A +D+ FKR +E ++E G WY R SKKM E+RTPLM+A+ +GSI
Sbjct: 117 SSLLELAANNDVSGFKRLIECDPSSIDEVGLWYIRHKESKKMVNEQRTPLMVAATYGSID 296
Query: 68 VVKYIIETNMVNVNMAIGSENVTALHCAVAGGSKSKFEIVKLLLDAGADVDFLD 121
V+K I+ + +VN++ G + TALHCA +GGS++ + VKLLL+AGADV+ +D
Sbjct: 297 VMKLILSLSEADVNLSCGLDKSTALHCAASGGSENAVDAVKLLLEAGADVNSVD 458
>BG790659
Length = 358
Score = 95.1 bits (235), Expect = 2e-20
Identities = 47/60 (78%), Positives = 50/60 (83%)
Frame = +1
Query: 5 FQNSTLLELSAIDDIEAFKREVEEKGYDVNEAGFWYCRKIGSKKMCYEKRTPLMIASLFG 64
+ NS LLELSA DD EAFKREV+EKG DVNEAG WY R+IGSKKM E RTPLMIASLFG
Sbjct: 178 YNNSVLLELSAXDDFEAFKREVDEKGLDVNEAGLWYGRRIGSKKMGSETRTPLMIASLFG 357
>TC220991 weakly similar to GB|AAM16218.1|20334714|AY093957
At2g41900/T6D20.20 {Arabidopsis thaliana;} , partial
(14%)
Length = 681
Score = 92.0 bits (227), Expect = 1e-19
Identities = 45/93 (48%), Positives = 63/93 (67%)
Frame = +1
Query: 8 STLLELSAIDDIEAFKREVEEKGYDVNEAGFWYCRKIGSKKMCYEKRTPLMIASLFGSIR 67
S+LLEL++ +DIE FK +E+ +NE G WY R+ GSK+ E RTPLM+A+ +GSI
Sbjct: 397 SSLLELASNNDIEGFKVLLEKDSSTINEVGLWYGRQNGSKQFVLEHRTPLMVAATYGSID 576
Query: 68 VVKYIIETNMVNVNMAIGSENVTALHCAVAGGS 100
V+K ++ +VN A G+ TALHCA +GGS
Sbjct: 577 VMKMVLLCPEADVNFACGANKTTALHCAASGGS 675
>TC206602 similar to UP|Q9LUZ4 (Q9LUZ4) Zinc finger transcription factor-like
protein (AT5g58620/mzn1_70), partial (31%)
Length = 1855
Score = 90.5 bits (223), Expect = 4e-19
Identities = 40/53 (75%), Positives = 44/53 (82%)
Frame = +1
Query: 139 EKKDSGYAIDTSLPDINNGVFVTDEFRMYSFKVKTCSRGYTHDWTECPFVHPG 191
E KD Y ID SLPDI NG++ TDEFRMY+FKVK CSR Y+HDWTECPFVHPG
Sbjct: 13 EGKD--YPIDLSLPDIKNGIYGTDEFRMYTFKVKPCSRAYSHDWTECPFVHPG 165
>TC231961 homologue to GB|AAM16218.1|20334714|AY093957 At2g41900/T6D20.20
{Arabidopsis thaliana;} , partial (25%)
Length = 893
Score = 90.5 bits (223), Expect = 4e-19
Identities = 44/84 (52%), Positives = 59/84 (69%), Gaps = 6/84 (7%)
Frame = +2
Query: 114 GADVDFLDEVVRQKLSVANSKEL------VAEKKDSGYAIDTSLPDINNGVFVTDEFRMY 167
G+D L V+R + ++++L V+EKK+ Y +D SLPDI N ++ +DEFRMY
Sbjct: 26 GSDDWSLLRVMRSTCNGCSAEDLKMKTNEVSEKKE--YPVDLSLPDIKNSIYSSDEFRMY 199
Query: 168 SFKVKTCSRGYTHDWTECPFVHPG 191
SFKV+ CSR Y+HDWTECPFVHPG
Sbjct: 200 SFKVRPCSRAYSHDWTECPFVHPG 271
>TC225715 similar to GB|AAM16218.1|20334714|AY093957 At2g41900/T6D20.20
{Arabidopsis thaliana;} , partial (42%)
Length = 2142
Score = 89.7 bits (221), Expect = 7e-19
Identities = 38/55 (69%), Positives = 46/55 (83%)
Frame = +3
Query: 137 VAEKKDSGYAIDTSLPDINNGVFVTDEFRMYSFKVKTCSRGYTHDWTECPFVHPG 191
++EKK+ Y ID SLPDI N ++ TDEFRM+SFKV+ CSR Y+HDWTECPFVHPG
Sbjct: 6 LSEKKE--YPIDPSLPDIKNSIYATDEFRMFSFKVRPCSRAYSHDWTECPFVHPG 164
>BQ295977 similar to GP|8843784|dbj zinc finger transcription factor-like
protein {Arabidopsis thaliana}, partial (22%)
Length = 422
Score = 85.1 bits (209), Expect = 2e-17
Identities = 33/45 (73%), Positives = 40/45 (88%)
Frame = +3
Query: 147 IDTSLPDINNGVFVTDEFRMYSFKVKTCSRGYTHDWTECPFVHPG 191
+D SLPDI NG++ +DEFRMY+FKV+ CSR Y+HDWTECPFVHPG
Sbjct: 6 VDLSLPDIKNGIYSSDEFRMYTFKVRPCSRAYSHDWTECPFVHPG 140
>TC211182 similar to GB|AAO63406.1|28950965|BT005342 At1g03790 {Arabidopsis
thaliana;} , partial (27%)
Length = 700
Score = 62.0 bits (149), Expect = 2e-10
Identities = 25/45 (55%), Positives = 35/45 (77%), Gaps = 1/45 (2%)
Frame = +2
Query: 148 DTSLPDINNG-VFVTDEFRMYSFKVKTCSRGYTHDWTECPFVHPG 191
D+S D ++G + +D+FRM+ FKV+ CSR +HDWT+CPFVHPG
Sbjct: 236 DSSTDDDSDGDPYASDQFRMFEFKVRRCSRSRSHDWTDCPFVHPG 370
>AW568218
Length = 427
Score = 59.3 bits (142), Expect = 1e-09
Identities = 22/42 (52%), Positives = 31/42 (73%)
Frame = +3
Query: 150 SLPDINNGVFVTDEFRMYSFKVKTCSRGYTHDWTECPFVHPG 191
S D + + +D+FRM+ FKV+ C+R +HDWT+CPFVHPG
Sbjct: 234 SSDDDSGDPYASDQFRMFEFKVRRCTRSRSHDWTDCPFVHPG 359
>TC205752
Length = 1020
Score = 57.4 bits (137), Expect = 4e-09
Identities = 24/51 (47%), Positives = 33/51 (64%), Gaps = 2/51 (3%)
Frame = +1
Query: 142 DSGYAIDTSLPDINN--GVFVTDEFRMYSFKVKTCSRGYTHDWTECPFVHP 190
D G A+ S+ + +F +D FRM+ FKV+ C RG +HDWTECP+ HP
Sbjct: 37 DGGGALSPSISSNADTCSLFSSDHFRMFQFKVRNCPRGRSHDWTECPYAHP 189
>TC218822
Length = 554
Score = 57.0 bits (136), Expect = 5e-09
Identities = 25/76 (32%), Positives = 42/76 (54%)
Frame = +3
Query: 116 DVDFLDEVVRQKLSVANSKELVAEKKDSGYAIDTSLPDINNGVFVTDEFRMYSFKVKTCS 175
+ D+ +++ LS E + DS + + P++ + D FRM+ FKV+ C+
Sbjct: 111 NADYSPYSMQEALSALQHYESTDAESDS--EVPSREPEVPVDAYSCDHFRMFEFKVRRCA 284
Query: 176 RGYTHDWTECPFVHPG 191
R +HDWT+CP+ HPG
Sbjct: 285 RCRSHDWTDCPYAHPG 332
>TC205753
Length = 457
Score = 56.2 bits (134), Expect = 9e-09
Identities = 20/33 (60%), Positives = 26/33 (78%)
Frame = +3
Query: 158 VFVTDEFRMYSFKVKTCSRGYTHDWTECPFVHP 190
+F +D FRM+ FKV+ C RG +HDWTECP+ HP
Sbjct: 105 LFSSDHFRMFQFKVRICPRGRSHDWTECPYAHP 203
>AW507825
Length = 375
Score = 55.8 bits (133), Expect = 1e-08
Identities = 28/78 (35%), Positives = 40/78 (50%)
Frame = +1
Query: 114 GADVDFLDEVVRQKLSVANSKELVAEKKDSGYAIDTSLPDINNGVFVTDEFRMYSFKVKT 173
G DV +E + QK +N + +D Y+ +D FRM+ FKV+
Sbjct: 172 GTDVYSSEETMLQKFLPSNDSD-----EDDPYS--------------SDHFRMFEFKVRR 294
Query: 174 CSRGYTHDWTECPFVHPG 191
C+R +HDWT+CPF HPG
Sbjct: 295 CTRSRSHDWTDCPFAHPG 348
>TC224208 similar to GB|AAO63406.1|28950965|BT005342 At1g03790 {Arabidopsis
thaliana;} , partial (28%)
Length = 884
Score = 55.5 bits (132), Expect = 2e-08
Identities = 19/33 (57%), Positives = 26/33 (78%)
Frame = +2
Query: 159 FVTDEFRMYSFKVKTCSRGYTHDWTECPFVHPG 191
+ +D FRM+ FKV+ C+R +HDWT+CPF HPG
Sbjct: 281 YSSDHFRMFEFKVRQCTRSRSHDWTDCPFAHPG 379
>TC225717 weakly similar to UP|Q8L3W6 (Q8L3W6) Zinc finger transcription
factor-like protein, partial (13%)
Length = 447
Score = 53.9 bits (128), Expect = 4e-08
Identities = 35/96 (36%), Positives = 52/96 (53%), Gaps = 11/96 (11%)
Frame = +2
Query: 68 VVKYIIETNMVNVNMAIGSENVTALHCAVAGGSKSKFEIVKLLLDAGADVDFLDE----- 122
V+K I+ +VN A G+ TALHCA +GGS + + VK+LL AGADV+ +D
Sbjct: 2 VMKIILLCPEADVNFACGANKTTALHCAASGGSANAVDAVKILLSAGADVNGVDANGNRP 181
Query: 123 ----VVRQKLSVANS--KELVAEKKDSGYAIDTSLP 152
V KL A + +EL+++ G + S+P
Sbjct: 182 IDVIAVPPKLQGAKAVLEELLSDSASEGSIGEFSVP 289
>AW508155
Length = 220
Score = 46.6 bits (109), Expect = 7e-06
Identities = 17/33 (51%), Positives = 25/33 (75%)
Frame = +2
Query: 159 FVTDEFRMYSFKVKTCSRGYTHDWTECPFVHPG 191
+ +D+FRM+ FKV+ +R +HDWT+ PFVH G
Sbjct: 14 YASDQFRMFEFKVRRLTRSRSHDWTD*PFVHTG 112
>TC221753 similar to UP|Q9LVG7 (Q9LVG7) Ankyrin-like protein, partial (31%)
Length = 762
Score = 37.4 bits (85), Expect = 0.004
Identities = 23/61 (37%), Positives = 37/61 (59%)
Frame = +3
Query: 57 LMIASLFGSIRVVKYIIETNMVNVNMAIGSENVTALHCAVAGGSKSKFEIVKLLLDAGAD 116
L IA+ G + +VK ++E + ++M + N TA+H A G EIVKLLL+AG++
Sbjct: 93 LHIAAKQGDLDIVKILMEAHP-ELSMTVDPSNTTAVHTAALQGHT---EIVKLLLEAGSN 260
Query: 117 V 117
+
Sbjct: 261 L 263
>TC230807 similar to GB|AAO63323.1|28950799|BT005259 At2g03430 {Arabidopsis
thaliana;} , partial (93%)
Length = 992
Score = 33.9 bits (76), Expect = 0.048
Identities = 29/84 (34%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Frame = +1
Query: 52 EKRTPLMIASLFGSIRVVKYIIETNM-VNVNMAIGSENVTALHCAVAGGSKSKFEIVKLL 110
+ R+ L +A+ G +VVK ++ + V V E LH A + GS EIV+ L
Sbjct: 190 DARSLLHVAASSGHSQVVKMLLSCDASVGVVNCADEEGWAPLHSAASIGS---VEIVETL 360
Query: 111 LDAGADVDFLDEVVRQKLSVANSK 134
L GADV+ + R L A SK
Sbjct: 361 LSKGADVNLKNNGGRTALHYAASK 432
>AW278895
Length = 496
Score = 32.0 bits (71), Expect = 0.18
Identities = 20/75 (26%), Positives = 30/75 (39%)
Frame = +2
Query: 116 DVDFLDEVVRQKLSVANSKELVAEKKDSGYAIDTSLPDINNGVFVTDEFRMYSFKVKTCS 175
D D+ VR+ LS E K DS + ++ + D RM+ KV C+
Sbjct: 83 DADYSPYSVRKTLSALEDCESTDAKSDSEVPCSKAEGPVDT--YSYDHCRMFECKVSRCT 256
Query: 176 RGYTHDWTECPFVHP 190
+H CP+ P
Sbjct: 257 XYRSHK*DRCPYARP 301
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.318 0.135 0.393
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,422,713
Number of Sequences: 63676
Number of extensions: 79982
Number of successful extensions: 420
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 417
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 419
length of query: 193
length of database: 12,639,632
effective HSP length: 92
effective length of query: 101
effective length of database: 6,781,440
effective search space: 684925440
effective search space used: 684925440
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)
Medicago: description of AC142498.2