BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC142224.1 - phase: 0
(309 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC227065 weakly similar to UP|Q9LP71 (Q9LP71) T1N15.15, partial ... 486 e-138
TC227066 weakly similar to UP|Q6NPS5 (Q6NPS5) At3g24250, partial... 193 9e-50
BG790114 87 7e-18
TC219649 weakly similar to UP|Q95JD1 (Q95JD1) Basic proline-rich... 49 2e-06
TC230183 homologue to UP|GLHR_ANTEL (P35409) Probable glycoprote... 44 7e-05
TC209891 weakly similar to UP|Q9LW52 (Q9LW52) Arabidopsis thalia... 42 5e-04
CK606526 41 8e-04
TC218676 weakly similar to UP|Q948Y6 (Q948Y6) VMP4 protein, part... 40 0.001
TC227614 similar to UP|Q9LQV9 (Q9LQV9) F10B6.11, partial (5%) 39 0.003
CK606365 39 0.004
TC219248 weakly similar to UP|Q95JD1 (Q95JD1) Basic proline-rich... 38 0.007
TC227265 similar to UP|Q8W157 (Q8W157) Glycine-rich protein, par... 36 0.019
CO979245 36 0.019
TC226604 similar to UP|Q93YR3 (Q93YR3) HSP associated protein li... 36 0.019
TC226195 weakly similar to UP|Q95JD0 (Q95JD0) Basic proline-rich... 35 0.043
TC226603 similar to UP|Q93YR3 (Q93YR3) HSP associated protein li... 35 0.056
TC209672 similar to GB|AAM19966.1|20466089|AY098956 At2g32600/T2... 35 0.056
BM093797 35 0.056
TC204724 similar to UP|Q9AXQ2 (Q9AXQ2) Mitochondrial processing ... 34 0.074
TC206202 UP|Q99367 (Q99367) DNA-directed RNA polymerase (Fragme... 34 0.074
>TC227065 weakly similar to UP|Q9LP71 (Q9LP71) T1N15.15, partial (41%)
Length = 1239
Score = 486 bits (1251), Expect = e-138
Identities = 242/309 (78%), Positives = 260/309 (83%)
Frame = +2
Query: 1 MATDKSVLAVIRAARPTFRNQNDKIAFVVHSSFLASGYILTATGPQALSDTALSNPSNDE 60
MA+ K VLAVIRAARPTFRNQNDKIAF VHSSFL SGY+LTATGPQALSD A S+PSNDE
Sbjct: 11 MASQKLVLAVIRAARPTFRNQNDKIAFAVHSSFLTSGYVLTATGPQALSDNAFSDPSNDE 190
Query: 61 VSVDHWNELNDEYAFVYANSEKEGLKKVLVKCLVMNGKLLVHALSEGFKEPLHLEINVAD 120
VSVDHWNELNDEYAFVYAN EK G +KVLVKCLVMN KLLVHAL++G EPL LEI+V D
Sbjct: 191 VSVDHWNELNDEYAFVYANPEK-GSEKVLVKCLVMNDKLLVHALTQGSSEPLSLEIDVGD 367
Query: 121 YAGEDGGSNFSQQFKNLDKLVKKIDADILSKLDGTAHASSSTKSSKTSDSTRPETSEPVP 180
YA EDGGSN+SQQFKNLDKLVK+ID DILSKLDG+A ASSS++SS+TSD TR E +PV
Sbjct: 368 YAEEDGGSNYSQQFKNLDKLVKRIDGDILSKLDGSAKASSSSRSSETSDRTRQEIPDPVA 547
Query: 181 GFGEPAGPNDYHPGFIVPPVPAGSGSDLFPGPGAGMYPSRGDHDFGGSMLVGPNDPRWFS 240
GFGEPA P I P VP GSGSDL PGP AG++PSRG H GGSMLVGPNDPRWF
Sbjct: 548 GFGEPADPPTQ---IIFPSVPIGSGSDLVPGPAAGVFPSRGGHGIGGSMLVGPNDPRWF- 715
Query: 241 GGTGGGIGGGPGFIGGLPGAPPGARFDPIGPPGVPGFEPNRFARNPRRPGFDAHPDLQHF 300
GGIGG P F GGLPG PPGARFDP GPPGVPGFEPN+FARNPRRPG+DAHPDLQHF
Sbjct: 716 ----GGIGGDPAFPGGLPGVPPGARFDPYGPPGVPGFEPNKFARNPRRPGYDAHPDLQHF 883
Query: 301 RRDTDSDYI 309
RRD DSDYI
Sbjct: 884 RRDADSDYI 910
Score = 29.3 bits (64), Expect = 2.4
Identities = 16/35 (45%), Positives = 16/35 (45%)
Frame = -1
Query: 242 GTGGGIGGGPGFIGGLPGAPPGARFDPIGPPGVPG 276
GT GG G GG PG PPG P PP G
Sbjct: 807 GTPGGP*GSNRAPGGTPGNPPGKAGSPPIPPNQRG 703
>TC227066 weakly similar to UP|Q6NPS5 (Q6NPS5) At3g24250, partial (16%)
Length = 506
Score = 193 bits (490), Expect = 9e-50
Identities = 87/107 (81%), Positives = 90/107 (83%)
Frame = +1
Query: 203 GSGSDLFPGPGAGMYPSRGDHDFGGSMLVGPNDPRWFSGGTGGGIGGGPGFIGGLPGAPP 262
GSGSDL PGP AG++PSRG H GGSMLVGPNDPRWF G GGIGG P F GGLPG PP
Sbjct: 7 GSGSDLVPGPAAGVFPSRGGHGIGGSMLVGPNDPRWFGGV--GGIGGDPAFPGGLPGVPP 180
Query: 263 GARFDPIGPPGVPGFEPNRFARNPRRPGFDAHPDLQHFRRDTDSDYI 309
GARFDP GPPGVPGFEPNRFARNPRRPG+D HPD QHFRRD DSDYI
Sbjct: 181 GARFDPYGPPGVPGFEPNRFARNPRRPGYDTHPDWQHFRRDADSDYI 321
Score = 30.0 bits (66), Expect = 1.4
Identities = 17/40 (42%), Positives = 19/40 (47%)
Frame = -1
Query: 242 GTGGGIGGGPGFIGGLPGAPPGARFDPIGPPGVPGFEPNR 281
GT GG G GG PG PPG G P +P PN+
Sbjct: 218 GTPGGPYGSNRAPGGTPGNPPGKA----GSPPIPPTPPNQ 111
>BG790114
Length = 434
Score = 87.4 bits (215), Expect = 7e-18
Identities = 42/63 (66%), Positives = 45/63 (70%)
Frame = +3
Query: 196 IVPPVPAGSGSDLFPGPGAGMYPSRGDHDFGGSMLVGPNDPRWFSGGTGGGIGGGPGFIG 255
I P V +GSDL PGP AG++PSRG H GGSMLVGPNDPRWF GGIGG P F G
Sbjct: 114 IFPSVAFLTGSDLVPGPAAGVFPSRGGHGIGGSMLVGPNDPRWF-----GGIGGDPAFPG 278
Query: 256 GLP 258
GLP
Sbjct: 279 GLP 287
>TC219649 weakly similar to UP|Q95JD1 (Q95JD1) Basic proline-rich protein,
partial (37%)
Length = 750
Score = 49.3 bits (116), Expect = 2e-06
Identities = 48/153 (31%), Positives = 54/153 (34%), Gaps = 11/153 (7%)
Frame = -1
Query: 154 GTAHASSSTKSSKTSDSTRPETSEPVPGFGEPAGPNDYHPGFIVPPVPAGSGSDLFPG-- 211
G+A S T P EP G G +G PG P G G PG
Sbjct: 594 GSAGPGSGGYGGGPGGDTGPGGGEPGSGAGPGSGGYGGGPGGDAGPGGGGPGGGAGPGGG 415
Query: 212 -PGAGMYPSRGDHDFGGSMLVGPND--PRWFSGGTGGGIGGGPGFIGGLPGA------PP 262
PG+G P G + G VGP P +G GGG G G G GG PG P
Sbjct: 414 EPGSGAGPGSGGYGGGPGGGVGPGGGGPGGGAGRGGGGPGSGAGPSGGGPGGGSYGGEPG 235
Query: 263 GARFDPIGPPGVPGFEPNRFARNPRRPGFDAHP 295
G G G PG P+ GF P
Sbjct: 234 GGGPGGDGYGGGPGGGAGPDGGGPKDGGFGGGP 136
Score = 45.1 bits (105), Expect = 4e-05
Identities = 35/97 (36%), Positives = 39/97 (40%)
Frame = -1
Query: 180 PGFGEPAGPNDYHPGFIVPPVPAGSGSDLFPGPGAGMYPSRGDHDFGGSMLVGPNDPRWF 239
PG G +G Y G P G G GPG+G Y D G G +P
Sbjct: 678 PGGGAGSGGGSYGGGPGGDAGPGGGGPGGSAGPGSGGYGGGPGGDTGP----GGGEPGSG 511
Query: 240 SGGTGGGIGGGPGFIGGLPGAPPGARFDPIGPPGVPG 276
+G GG GGGPG G G PG P G G PG
Sbjct: 510 AGPGSGGYGGGPGGDAGPGGGGPGGGAGPGG--GEPG 406
Score = 40.4 bits (93), Expect = 0.001
Identities = 35/96 (36%), Positives = 36/96 (37%)
Frame = -1
Query: 181 GFGEPAGPNDYHPGFIVPPVPAGSGSDLFPGPGAGMYPSRGDHDFGGSMLVGPNDPRWFS 240
G G AGP PG P G G GPG P G+ G GP S
Sbjct: 636 GPGGDAGPGGGGPGGSAGPGSGGYGG----GPGGDTGPGGGEPGSGA----GPG-----S 496
Query: 241 GGTGGGIGGGPGFIGGLPGAPPGARFDPIGPPGVPG 276
GG GGG GG G GG PG G G PG
Sbjct: 495 GGYGGGPGGDAGPGGGGPGGGAGPGGGEPGSGAGPG 388
Score = 37.4 bits (85), Expect = 0.009
Identities = 27/68 (39%), Positives = 29/68 (41%), Gaps = 2/68 (2%)
Frame = -1
Query: 211 GPGAGMYPSRGDHDFGGSMLVGPNDPRWFSGGTGGGIGGGPGFIGGLPG--APPGARFDP 268
GPG G+ P G GG + GG GGG G G G GG PG A PG
Sbjct: 741 GPGGGVGPGGGGPVGGG-----------YGGGPGGGAGSGGGSYGGGPGGDAGPGGG--- 604
Query: 269 IGPPGVPG 276
GP G G
Sbjct: 603 -GPGGSAG 583
Score = 30.8 bits (68), Expect = 0.81
Identities = 34/119 (28%), Positives = 36/119 (29%), Gaps = 1/119 (0%)
Frame = +2
Query: 173 PETSEPVPGFGEPAGPNDYHPGFIVPPVPAGSGSDLFPG-PGAGMYPSRGDHDFGGSMLV 231
P P PG P GP PP P G PG P G P G G +
Sbjct: 323 PPPGPPPPGPTPPPGP---------PP*PPLPGPAPLPGSPPPGPAPPPGPPPPGPASPP 475
Query: 232 GPNDPRWFSGGTGGGIGGGPGFIGGLPGAPPGARFDPIGPPGVPGFEPNRFARNPRRPG 290
GP G LPG+PP P GPP P P PG
Sbjct: 476 GPPP*PPLPGPAP------------LPGSPPPGPVSPPGPPP*PPLPGPALPPGPPPPG 616
Score = 30.4 bits (67), Expect = 1.1
Identities = 28/76 (36%), Positives = 31/76 (39%), Gaps = 4/76 (5%)
Frame = -1
Query: 181 GFGEPAGPNDYHPG---FIVPPVPAGSGSDLFPG-PGAGMYPSRGDHDFGGSMLVGPNDP 236
G G AGP+ PG + P G G D + G PG G P G GP D
Sbjct: 303 GPGSGAGPSGGGPGGGSYGGEPGGGGPGGDGYGGGPGGGAGPDGG----------GPKD- 157
Query: 237 RWFSGGTGGGIGGGPG 252
GG GGG GG G
Sbjct: 156 ----GGFGGGPYGGYG 121
>TC230183 homologue to UP|GLHR_ANTEL (P35409) Probable glycoprotein hormone
G-protein coupled receptor precursor, partial (6%)
Length = 878
Score = 44.3 bits (103), Expect = 7e-05
Identities = 46/128 (35%), Positives = 51/128 (38%), Gaps = 3/128 (2%)
Frame = +1
Query: 167 TSDSTRPETSEPVPGFGEPAGPNDYHPGFIVPPVPAGSGSDLFPGPGAGMYPSRGDHDFG 226
+SD E E V G G G + GF G G FPG G G +P FG
Sbjct: 103 SSDVAARELKE-VTGAGLSGGRGVNYGGFGGGSPGFGGG---FPGFGVGSFPG-----FG 255
Query: 227 GSMLVGPNDPRWFSGGTGGGIGGG--PGFIGG-LPGAPPGARFDPIGPPGVPGFEPNRFA 283
G G P + GG G GGG PGF GG PG G F G G PG+ F
Sbjct: 256 G----GGGFPGFGGGGRFPGFGGGGSPGFGGGGFPGFGGGGGFPGFGGGGFPGYGGGGF- 420
Query: 284 RNPRRPGF 291
PGF
Sbjct: 421 -----PGF 429
Score = 42.0 bits (97), Expect = 4e-04
Identities = 32/83 (38%), Positives = 36/83 (42%), Gaps = 3/83 (3%)
Frame = +1
Query: 180 PGFGEPAGPNDYHPGFIVPPVPAGSGSDLFPGPGAGMYPSRGDHDFGGSMLVGPNDPRWF 239
PGFG P GF P G FPG G G +P G F G G N+P
Sbjct: 298 PGFGGGGSPGFGGGGF-----PGFGGGGGFPGFGGGGFPGYGGGGFPGFGGGGFNNPGLG 462
Query: 240 SGGTGGGIGGG---PGFIGGLPG 259
G G+GGG PGF GG+ G
Sbjct: 463 GGFNNPGLGGGFNNPGF-GGVGG 528
>TC209891 weakly similar to UP|Q9LW52 (Q9LW52) Arabidopsis thaliana genomic
DNA, chromosome 3, P1 clone: MLM24, partial (10%)
Length = 646
Score = 41.6 bits (96), Expect = 5e-04
Identities = 28/57 (49%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
Frame = +1
Query: 235 DPRWFSGGT---GGGIGGGPG-FIGGLPGAPPGARFDPIGPPGVPGFEPNRFARNPR 287
D + F GG+ GGGIGGG G F GG G G F P G G GF P R NPR
Sbjct: 172 DAKLFGGGSFFPGGGIGGGAGYFPGGGIGGGGGGGFFPGGGIGGGGFLPGRGFFNPR 342
>CK606526
Length = 513
Score = 40.8 bits (94), Expect = 8e-04
Identities = 32/84 (38%), Positives = 39/84 (46%), Gaps = 4/84 (4%)
Frame = -1
Query: 194 GFIVPPV--PAGSGS--DLFPGPGAGMYPSRGDHDFGGSMLVGPNDPRWFSGGTGGGIGG 249
GF PP+ P G G + F G G G+ PS+G G + P + GG G GG
Sbjct: 501 GFGSPPLVCPGGEGGPKNSFRGGGPGVGPSQGFR--------GASPPPF--GGIWGFFGG 352
Query: 250 GPGFIGGLPGAPPGARFDPIGPPG 273
PG GG PG G F P+G G
Sbjct: 351 SPG--GGAPGGAGGGFFPPLGALG 286
Score = 38.5 bits (88), Expect = 0.004
Identities = 31/93 (33%), Positives = 35/93 (37%)
Frame = -3
Query: 182 FGEPAGPNDYHPGFIVPPVPAGSGSDLFPGPGAGMYPSRGDHDFGGSMLVGPNDPRWFSG 241
F P GP PP+P + GPG G S G F G G PR+ G
Sbjct: 310 FSPPRGPGGG------PPLPGPFWGNPLGGPGGGGVVSGGLGIFLGG---GAPPPRFSGG 158
Query: 242 GTGGGIGGGPGFIGGLPGAPPGARFDPIGPPGV 274
G G+GG P GA P PPGV
Sbjct: 157 GFLFGVGGEPKVFSPWGGALGSGGAPPFFPPGV 59
Score = 37.0 bits (84), Expect = 0.011
Identities = 36/98 (36%), Positives = 40/98 (40%), Gaps = 9/98 (9%)
Frame = -2
Query: 178 PVPGFGEPAGPNDYHPGFIVPPVPAGSGSDLFPGPGAGMYPSRGDHDFGGSMLVGPNDPR 237
P GF P+GP G PP P S G G + G+ FGG GP P
Sbjct: 323 PGGGFFPPSGPW----GGTTPPRPFLGESFGGTWGGGGCFRGAGNF-FGGG---GPPSPV 168
Query: 238 -------WFSGGTGG--GIGGGPGFIGGLPGAPPGARF 266
W GGT G +GGGPGF GG P P F
Sbjct: 167 FRGGFFIWGWGGTKGFFPLGGGPGFRGGPPLFSPRGLF 54
Score = 28.1 bits (61), Expect = 5.3
Identities = 38/137 (27%), Positives = 49/137 (35%), Gaps = 9/137 (6%)
Frame = +2
Query: 162 TKSSKTSDSTRPETSEPVPGFGEPAGPNDYHPGFIVPPVPAGSGSDLFPGP--------- 212
T K + P+T+ PG + GP PG PP P G P P
Sbjct: 17 TLELKKGKNPPPKTN---PGGKKGGGP----PGTQGPP-PRGKNLWFPPNPK*KTPP*KP 172
Query: 213 GAGMYPSRGDHDFGGSMLVGPNDPRWFSGGTGGGIGGGPGFIGGLPGAPPGARFDPIGPP 272
G G P + + G+ P P+ G G P P AP G + P PP
Sbjct: 173 GRGGPPPQKNSQPPGNNPPPPRSPQRIPPKRAGE-GWSP------PRAPRGGKNPPPAPP 331
Query: 273 GVPGFEPNRFARNPRRP 289
G P P +NP+ P
Sbjct: 332 GAP--PPGEPPKNPQIP 376
Score = 27.7 bits (60), Expect = 6.9
Identities = 15/39 (38%), Positives = 18/39 (45%)
Frame = -3
Query: 238 WFSGGTGGGIGGGPGFIGGLPGAPPGARFDPIGPPGVPG 276
W GG GG+ P GG P P +P+G PG G
Sbjct: 340 WGPGGCRGGVFSPPRGPGGGPPLPGPFWGNPLGGPGGGG 224
>TC218676 weakly similar to UP|Q948Y6 (Q948Y6) VMP4 protein, partial (5%)
Length = 879
Score = 40.0 bits (92), Expect = 0.001
Identities = 42/129 (32%), Positives = 52/129 (39%), Gaps = 3/129 (2%)
Frame = +3
Query: 183 GEPAGPNDYHPGFIVPPVP---AGSGSDLFPGPGAGMYPSRGDHDFGGSMLVGPNDPRWF 239
G+P N+ HP PVP AG+G G G GM G +GG GP F
Sbjct: 138 GQPPMGNNNHPLNSSNPVPGSMAGAG-----GYGGGMGGPYGG--YGG----GPGSTG-F 281
Query: 240 SGGTGGGIGGGPGFIGGLPGAPPGARFDPIGPPGVPGFEPNRFARNPRRPGFDAHPDLQH 299
+G G G GGG GGL GA G+ + G G+P G +PD H
Sbjct: 282 AGAGGMGAGGGGVGGGGLGGAGGGSMYRLPGSGGMPA-------------GGGGYPDSGH 422
Query: 300 FRRDTDSDY 308
+ S Y
Sbjct: 423 YGLSASSGY 449
>TC227614 similar to UP|Q9LQV9 (Q9LQV9) F10B6.11, partial (5%)
Length = 891
Score = 38.9 bits (89), Expect = 0.003
Identities = 27/77 (35%), Positives = 33/77 (42%), Gaps = 6/77 (7%)
Frame = -1
Query: 194 GFIVPPVPAGSGSDLFPGPGAGMYP------SRGDHDFGGSMLVGPNDPRWFSGGTGGGI 247
GF VPAG+ D P PG G +RG GG V P +P + G G G+
Sbjct: 423 GFTSAKVPAGNC*DELPEPGGGRKTPVPGAGTRGGGCLGGGAPVHPVEPGGNATGAGNGM 244
Query: 248 GGGPGFIGGLPGAPPGA 264
GG G + P GA
Sbjct: 243 GGTTGAVTNNGCMPTGA 193
>CK606365
Length = 587
Score = 38.5 bits (88), Expect = 0.004
Identities = 33/82 (40%), Positives = 38/82 (46%), Gaps = 9/82 (10%)
Frame = -2
Query: 205 GSDLFPGPGAGMYP-----SRGDHDFGGSMLVGPNDPRWFSGGTGGGIGGGPGFIGGL-- 257
G +FP P G +P RG FGG GP+ P FS G GG G + L
Sbjct: 547 GKPVFP-PWGGGFPLPPPKGRGAGFFGGGRGRGPHWPTPFSRGGGGFFMAGAPPVFPLEK 371
Query: 258 -PGAPPGARFDPIGPP-GVPGF 277
PG PP R +GPP G PGF
Sbjct: 370 GPGGPPQLR--GVGPPLGPPGF 311
Score = 38.1 bits (87), Expect = 0.005
Identities = 43/140 (30%), Positives = 50/140 (35%), Gaps = 22/140 (15%)
Frame = -1
Query: 174 ETSEPVPGFGEPAGPNDYHPGFI-----------VPPVPAGSGSDLFPGPGAGMYPSRGD 222
ET P G G P P + G + P+ G G + G G P +G
Sbjct: 545 ETGFPPLGGGVPPPPPERPGGGVFWGGEGEGAPLANPLFPGGGGFFYGGGPPGFPPGKGA 366
Query: 223 HDF----GGSMLVGPND--PRWFSGGTGGGIGGGPGFIGGLPGAPPGARFDPIGPPGVPG 276
GG +GP P WF GG GGG F G AP RF GP G+P
Sbjct: 365 GGAPPIKGGGPPLGPPRVFPFWFRVVFLGGFGGGKNFPPGTGLAPVSPRFFG-GPFGIPR 189
Query: 277 FEPN-----RFARNPRRPGF 291
F F P PGF
Sbjct: 188 FASPGGGGFPFGGPPGGPGF 129
Score = 30.0 bits (66), Expect = 1.4
Identities = 27/70 (38%), Positives = 29/70 (40%), Gaps = 2/70 (2%)
Frame = -3
Query: 205 GSDLFPGPGAGMYPSRGDHDFGGSMLVGPNDPRWFSGG--TGGGIGGGPGFIGGLPGAPP 262
G FPG G +R GG P+ PR G GGG GGGP IG P
Sbjct: 585 GPQFFPGVSPGFGGNRFSPLGGGG---SPSPPRKAGGRGFLGGGGGGGP--IGQPPFPGG 421
Query: 263 GARFDPIGPP 272
G F GPP
Sbjct: 420 GGVFLWRGPP 391
Score = 29.3 bits (64), Expect = 2.4
Identities = 36/135 (26%), Positives = 41/135 (29%), Gaps = 36/135 (26%)
Frame = +1
Query: 173 PETSEPVPG---FGEPAGPNDYHPGFIVPPVPAGSGSDLFPGPGAGMYPSR-------GD 222
P+ P PG G P GP PVP G FP P +R G
Sbjct: 154 PKGKPPPPGEANLGIPKGPPKNRGETGAKPVPGGK---FFPPPNPPKKTTRNQKGKTRGG 324
Query: 223 HDFGGSMLVGPNDPRWFSGGTGGG--------------IGGG------------PGFIGG 256
G L+G P F GG GG + G PG GG
Sbjct: 325 PRGGPPPLIGGAPPAPFPGGKPGGPPP*KNPPPPGKRGLANGAPSPSPPQKTPPPGLSGG 504
Query: 257 LPGAPPGARFDPIGP 271
G PP P+ P
Sbjct: 505 GGGTPPPKGGKPVSP 549
>TC219248 weakly similar to UP|Q95JD1 (Q95JD1) Basic proline-rich protein,
partial (11%)
Length = 450
Score = 37.7 bits (86), Expect = 0.007
Identities = 28/67 (41%), Positives = 28/67 (41%), Gaps = 4/67 (5%)
Frame = -2
Query: 199 PVPAGSGSDLFPGPGA-GMYPSRGDHDFGGSMLVGPNDPRWFSGGTGGGIG---GGPGFI 254
PV G G PGPG G P G GP P W G G G G GGPGF
Sbjct: 335 PVNMGPGGPGGPGPGGPGWGPGGG----------GPGGPGWGPGPGGPGWGPGLGGPGFF 186
Query: 255 GGLPGAP 261
G PG P
Sbjct: 185 G--PGGP 171
Score = 31.6 bits (70), Expect = 0.48
Identities = 21/49 (42%), Positives = 21/49 (42%), Gaps = 3/49 (6%)
Frame = -2
Query: 226 GGSMLVGPNDPRWFSGGTGGG---IGGGPGFIGGLPGAPPGARFDPIGP 271
GG GP P W GG G G G GPG G PG F P GP
Sbjct: 317 GGPGGPGPGGPGWGPGGGGPGGPGWGPGPGGPGWGPGLGGPGFFGPGGP 171
>TC227265 similar to UP|Q8W157 (Q8W157) Glycine-rich protein, partial (37%)
Length = 825
Score = 36.2 bits (82), Expect = 0.019
Identities = 26/66 (39%), Positives = 28/66 (42%), Gaps = 3/66 (4%)
Frame = +2
Query: 201 PAGSGSDLFPGPGAGMYPSRGDHDFGGSMLVGPNDPRWFSGGTGG--GIGGG-PGFIGGL 257
P GS +PG G G YP G + G GG GG G GGG PG GG
Sbjct: 179 PGGSYGGGYPGHGGGGYPGHGGGGYPG------------HGGGGGYPGHGGGHPGHGGGY 322
Query: 258 PGAPPG 263
PG G
Sbjct: 323 PGRGGG 340
>CO979245
Length = 730
Score = 36.2 bits (82), Expect = 0.019
Identities = 33/102 (32%), Positives = 42/102 (40%), Gaps = 9/102 (8%)
Frame = -1
Query: 181 GFGEP-------AGPNDYHPGFIVPPVPAGSGSDLFPGPGAGMYPSRGDHDFGGSMLVGP 233
GFG+ A P+ + GF P+G + G AG+ + FG G
Sbjct: 535 GFGQSRQLGSGFAAPSGFGGGFAGSSSPSGFSNTAIGGGFAGIAST--GRGFGSVASTGS 362
Query: 234 NDPRWFSG-GTGGGIGGGPGFIGGLPG-APPGARFDPIGPPG 273
FSG +GGG GGG GG G A PG+ F PG
Sbjct: 361 GG---FSGIASGGGFGGGAAPGGGFGGAAAPGSGFGAAAAPG 245
>TC226604 similar to UP|Q93YR3 (Q93YR3) HSP associated protein like, partial
(82%)
Length = 1427
Score = 36.2 bits (82), Expect = 0.019
Identities = 22/56 (39%), Positives = 25/56 (44%)
Frame = +2
Query: 235 DPRWFSGGTGGGIGGGPGFIGGLPGAPPGARFDPIGPPGVPGFEPNRFARNPRRPG 290
+P GG GG+ GG GG+PG PGA P G PG G F PG
Sbjct: 908 NPGGMPGGFPGGMPGGFPGAGGMPGGFPGAGGMPGGFPGAGGMPGGGFPGAGGMPG 1075
Score = 30.0 bits (66), Expect = 1.4
Identities = 22/55 (40%), Positives = 24/55 (43%)
Frame = +2
Query: 209 FPGPGAGMYPSRGDHDFGGSMLVGPNDPRWFSGGTGGGIGGGPGFIGGLPGAPPG 263
FPG G +P G G G P F G G GG PG GG+PG PG
Sbjct: 932 FPGGMPGGFPGAGGMPGGFPGAGGM--PGGFPGAGGMPGGGFPG-AGGMPGGVPG 1087
Score = 28.1 bits (61), Expect = 5.3
Identities = 24/72 (33%), Positives = 27/72 (37%)
Frame = -3
Query: 208 LFPGPGAGMYPSRGDHDFGGSMLVGPNDPRWFSGGTGGGIGGGPGFIGGLPGAPPGARFD 267
+FPG GM P+ G G P P G P I PG PPG
Sbjct: 1092 MFPGTPPGMPPAPGKPPPGI-----PPAP------------GKPPGIPPAPGKPPGMPPA 964
Query: 268 PIGPPGVPGFEP 279
P PPG+P P
Sbjct: 963 PGKPPGMPPGNP 928
>TC226195 weakly similar to UP|Q95JD0 (Q95JD0) Basic proline-rich protein,
partial (17%)
Length = 654
Score = 35.0 bits (79), Expect = 0.043
Identities = 37/98 (37%), Positives = 39/98 (39%), Gaps = 1/98 (1%)
Frame = -3
Query: 180 PGFGEPAGPNDYHPGFIVPPVPAGSGSDLFPGPGAGMYPSRGDHDFG-GSMLVGPNDPRW 238
PG G P GP G P G PG G + G G G GP P W
Sbjct: 370 PGGGGPGGPGGGGVG*AYGG-PGGPWC**KPGSGGPGWWCGGPGGGGVG*ACGGPGGPWW 194
Query: 239 FSGGTGGGIGGGPGFIGGLPGAPPGARFDPIGPPGVPG 276
+ GG GGG G G GG G PG P GPPG G
Sbjct: 193 WCGGPGGG-GDG*ACSGGAGG--PGWW*GP-GPPGGGG 92
Score = 29.3 bits (64), Expect = 2.4
Identities = 15/29 (51%), Positives = 16/29 (54%), Gaps = 5/29 (17%)
Frame = -3
Query: 238 WFSGGTGGGIGGGPGFIG-----GLPGAP 261
W+ GG GGG GGPG G G PG P
Sbjct: 385 WWCGGPGGGGPGGPGGGGVG*AYGGPGGP 299
Score = 28.5 bits (62), Expect = 4.0
Identities = 30/97 (30%), Positives = 31/97 (31%)
Frame = +3
Query: 198 PPVPAGSGSDLFPGPGAGMYPSRGDHDFGGSMLVGPNDPRWFSGGTGGGIGGGPGFIGGL 257
PP P G G PGP A P H P+ P G P G
Sbjct: 93 PPPPGGPGPHHHPGPPA---PPLHAH---------PSPPP----------PGPPHHHHGP 206
Query: 258 PGAPPGARFDPIGPPGVPGFEPNRFARNPRRPGFDAH 294
PG P P PPG P P P PGF H
Sbjct: 207 PGPPHAYPTPP--PPGPPHHHP-----GPPEPGFHQH 296
>TC226603 similar to UP|Q93YR3 (Q93YR3) HSP associated protein like, partial
(36%)
Length = 809
Score = 34.7 bits (78), Expect = 0.056
Identities = 20/39 (51%), Positives = 21/39 (53%)
Frame = +3
Query: 242 GTGGGIGGGPGFIGGLPGAPPGARFDPIGPPGVPGFEPN 280
G GG GG PG GG+PG PGA P G PG G N
Sbjct: 240 GAGGMPGGFPG-AGGMPGGFPGAGGMPGGFPGAGGMPGN 353
Score = 34.3 bits (77), Expect = 0.074
Identities = 22/50 (44%), Positives = 23/50 (46%)
Frame = +3
Query: 241 GGTGGGIGGGPGFIGGLPGAPPGARFDPIGPPGVPGFEPNRFARNPRRPG 290
GG GG GG GG+PG PGA P G PG G P F PG
Sbjct: 174 GGMPGGFPGGFPGAGGMPGGFPGAGGMPGGFPGAGGM-PGGFPGAGGMPG 320
Score = 29.6 bits (65), Expect = 1.8
Identities = 24/55 (43%), Positives = 25/55 (44%), Gaps = 3/55 (5%)
Frame = +3
Query: 209 FPG--PGAGMYPSRGDHDFGGSMLVG-PNDPRWFSGGTGGGIGGGPGFIGGLPGA 260
FPG PGAG P G G M G P +GG GG G G GG PGA
Sbjct: 192 FPGGFPGAGGMP--GGFPGAGGMPGGFPG-----AGGMPGGFPGAGGMPGGFPGA 335
Score = 28.1 bits (61), Expect = 5.3
Identities = 23/64 (35%), Positives = 27/64 (41%), Gaps = 5/64 (7%)
Frame = -2
Query: 242 GTGGGIGGGPGFIGGL---PGAPPGARFDPIGPPGVPGFEPNRFARNP--RRPGFDAHPD 296
G G+ PG G+ PG PPG P PPG+P P + NP PGF D
Sbjct: 328 GNPPGMPPAPGNPPGMPPAPGKPPGMPPAPGKPPGMPP-APGKPPGNPPGMPPGFLLEDD 152
Query: 297 LQHF 300
F
Sbjct: 151 CSCF 140
>TC209672 similar to GB|AAM19966.1|20466089|AY098956 At2g32600/T26B15.16
{Arabidopsis thaliana;} , partial (25%)
Length = 682
Score = 34.7 bits (78), Expect = 0.056
Identities = 24/68 (35%), Positives = 28/68 (40%)
Frame = -1
Query: 197 VPPVPAGSGSDLFPGPGAGMYPSRGDHDFGGSMLVGPNDPRWFSGGTGGGIGGGPGFIGG 256
+PP AG G + G G+ P G G +G GG GGG G G G
Sbjct: 391 IPPEGAGLGPLVAAIGGGGIDPGIGGGGALGGFAIGAPGGSPCGGGGGGGSGPWGGGGKG 212
Query: 257 LPGAPPGA 264
L G P GA
Sbjct: 211 LGGTPDGA 188
>BM093797
Length = 421
Score = 34.7 bits (78), Expect = 0.056
Identities = 21/58 (36%), Positives = 22/58 (37%)
Frame = +3
Query: 199 PVPAGSGSDLFPGPGAGMYPSRGDHDFGGSMLVGPNDPRWFSGGTGGGIGGGPGFIGG 256
P+ G G PGPG P G GP P W G G G G GF GG
Sbjct: 81 PINMGPGGPGGPGPGGPGGPGWGP---------GPGGPGWGPGPGGPGFFGSGGFFGG 227
Score = 28.5 bits (62), Expect = 4.0
Identities = 20/47 (42%), Positives = 21/47 (44%)
Frame = +3
Query: 231 VGPNDPRWFSGGTGGGIGGGPGFIGGLPGAPPGARFDPIGPPGVPGF 277
+GP P G GG G GPG G PG PG PG PGF
Sbjct: 90 MGPGGPGGPGPGGPGGPGWGPG--PGGPGWGPG--------PGGPGF 200
>TC204724 similar to UP|Q9AXQ2 (Q9AXQ2) Mitochondrial processing peptidase
beta subunit, partial (92%)
Length = 1868
Score = 34.3 bits (77), Expect = 0.074
Identities = 25/65 (38%), Positives = 30/65 (45%), Gaps = 5/65 (7%)
Frame = -1
Query: 203 GSGSDLFPGPGAGMY--PSRGDHDFGGSMLV-GPNDPRWFSGGTGGG--IGGGPGFIGGL 257
G G + G G+ P G H GG+++ G R GG GGG GGG G GG
Sbjct: 293 GPGGPVLEEAGVGVLELPELGLHGLGGAVVDHGGGGKRGGRGGGGGGHGGGGGEGSEGGE 114
Query: 258 PGAPP 262
G PP
Sbjct: 113 GGGPP 99
>TC206202 UP|Q99367 (Q99367) DNA-directed RNA polymerase (Fragment) ,
complete
Length = 1826
Score = 34.3 bits (77), Expect = 0.074
Identities = 27/107 (25%), Positives = 36/107 (33%)
Frame = +3
Query: 185 PAGPNDYHPGFIVPPVPAGSGSDLFPGPGAGMYPSRGDHDFGGSMLVGPNDPRWFSGGTG 244
P YH G + P L P A P + G M P +S +
Sbjct: 486 PISGTPYHEGLMSPSYLLSPNLRLSPTSDAQFSP------YVGGMAFSPTSSPGYSPSSP 647
Query: 245 GGIGGGPGFIGGLPGAPPGARFDPIGPPGVPGFEPNRFARNPRRPGF 291
G PG+ PG P + P P PG+ P +P PG+
Sbjct: 648 GYSPSSPGYSPTSPGYSPTS---PGYSPTSPGYSPTSPTYSPSSPGY 779
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.314 0.138 0.420
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,975,494
Number of Sequences: 63676
Number of extensions: 215580
Number of successful extensions: 2576
Number of sequences better than 10.0: 177
Number of HSP's better than 10.0 without gapping: 1722
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2085
length of query: 309
length of database: 12,639,632
effective HSP length: 97
effective length of query: 212
effective length of database: 6,463,060
effective search space: 1370168720
effective search space used: 1370168720
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 59 (27.3 bits)
Medicago: description of AC142224.1