BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC142222.6 - phase: 0
(123 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC219290 similar to UP|Q9M9A2 (Q9M9A2) F27J15.21 (At1g49000), pa... 118 6e-28
TC221966 similar to UP|Q9M9A2 (Q9M9A2) F27J15.21 (At1g49000), pa... 90 3e-19
BG509584 similar to GP|7770334|gb|A F27J15.21 {Arabidopsis thali... 60 3e-10
TC212945 weakly similar to UP|Q9M9H2 (Q9M9H2) F14O23.12, partial... 47 2e-06
TC210888 similar to UP|Q41051 (Q41051) Proline- and leucine-rich... 36 0.004
TC208256 similar to UP|Q84RR0 (Q84RR0) ARIADNE-like protein ARI7... 30 0.21
TC217776 similar to UP|Q93Y38 (Q93Y38) Transmembrane protein FT2... 28 1.1
TC212718 similar to UP|Q91CY9 (Q91CY9) ORF1, partial (4%) 28 1.1
TC224385 27 1.8
TC216413 similar to UP|Q93VN2 (Q93VN2) At2g14841/At2g14841, part... 27 1.8
TC219816 similar to UP|Q8RY12 (Q8RY12) AT5g20600/F7C8_190, parti... 27 2.4
TC234834 26 4.0
TC233038 similar to UP|Q8VYI7 (Q8VYI7) At1g80610/T21F11_6, parti... 26 4.0
CK605559 26 4.0
CA850947 homologue to GP|27948861|gb| H {SEN virus}, partial (1%) 26 5.2
TC228249 similar to UP|Q9M9V0 (Q9M9V0) F6A14.10 protein, partial... 26 5.2
TC219191 similar to UP|O49971 (O49971) Fimbrin-like protein AtFi... 25 6.8
TC212565 similar to UP|Q8LA44 (Q8LA44) Receptor protein kinase-l... 25 8.9
>TC219290 similar to UP|Q9M9A2 (Q9M9A2) F27J15.21 (At1g49000), partial (32%)
Length = 685
Score = 118 bits (296), Expect = 6e-28
Identities = 69/129 (53%), Positives = 85/129 (65%), Gaps = 17/129 (13%)
Frame = +2
Query: 12 SPKRQSNSSFFITISAILAMLSRQAR--------RLKGKAKTKKLLSNMSNKALSQFGKM 63
SPKR +++ F +TISAILA+L ++ LK ++ KKLLSN+S+KAL FG
Sbjct: 86 SPKRHNHNGFIVTISAILALLKKRKAAVKASKEDELKKSSRPKKLLSNISSKAL--FGHK 259
Query: 64 KKTKKQ-RDNEL--------NDGVWQKEILMGGKCEPLDFSGVIHYDINGRQTGEVPLRS 114
K KKQ R E N GVWQKEILMGGKCEPL+FSGVI+YD NG+Q ++PLRS
Sbjct: 260 KNNKKQLRSVEETQQAQGWGNGGVWQKEILMGGKCEPLNFSGVIYYDGNGKQLSQIPLRS 439
Query: 115 PRAIPFSRY 123
PRA P Y
Sbjct: 440 PRASPLPGY 466
>TC221966 similar to UP|Q9M9A2 (Q9M9A2) F27J15.21 (At1g49000), partial (29%)
Length = 773
Score = 89.7 bits (221), Expect = 3e-19
Identities = 50/99 (50%), Positives = 62/99 (62%), Gaps = 7/99 (7%)
Frame = +3
Query: 28 ILAMLSRQARRLKGKA-------KTKKLLSNMSNKALSQFGKMKKTKKQRDNELNDGVWQ 80
+ +SR RRL + KKLLSN+S+K L +K K+ ++ GVWQ
Sbjct: 30 VXXXVSRLQRRLAVRXXWRMELRSPKKLLSNISSKTLP----FRKKKRGEEDWGKGGVWQ 197
Query: 81 KEILMGGKCEPLDFSGVIHYDINGRQTGEVPLRSPRAIP 119
K ILMG KCEPLDFSGVI+YD NG+Q E+PLRSPRA P
Sbjct: 198 KAILMGDKCEPLDFSGVIYYDSNGKQVNEMPLRSPRASP 314
>BG509584 similar to GP|7770334|gb|A F27J15.21 {Arabidopsis thaliana},
partial (23%)
Length = 327
Score = 60.1 bits (144), Expect = 3e-10
Identities = 26/34 (76%), Positives = 29/34 (84%)
Frame = +2
Query: 86 GGKCEPLDFSGVIHYDINGRQTGEVPLRSPRAIP 119
G KCEPLDFSGVI+YD NG+Q E+PLRSPRA P
Sbjct: 2 GDKCEPLDFSGVIYYDSNGKQVNEMPLRSPRASP 103
>TC212945 weakly similar to UP|Q9M9H2 (Q9M9H2) F14O23.12, partial (15%)
Length = 625
Score = 47.0 bits (110), Expect = 2e-06
Identities = 27/63 (42%), Positives = 37/63 (57%), Gaps = 8/63 (12%)
Frame = +2
Query: 47 KLLSNMSNKALSQFGKMKKTKKQRDNELN--------DGVWQKEILMGGKCEPLDFSGVI 98
KL SN++N+ALS KM +K R+ E+ + +W+K ILMG KC PL+FSG
Sbjct: 224 KLNSNINNRALSMV-KMISWRKVREGEVEGDYSDQDEEALWRKNILMGEKCRPLNFSGKF 400
Query: 99 HYD 101
D
Sbjct: 401 END 409
>TC210888 similar to UP|Q41051 (Q41051) Proline- and leucine-rich protein,
partial (12%)
Length = 771
Score = 36.2 bits (82), Expect = 0.004
Identities = 17/28 (60%), Positives = 19/28 (67%)
Frame = +3
Query: 78 VWQKEILMGGKCEPLDFSGVIHYDINGR 105
VWQ+ IL G KCE FSG+I YD GR
Sbjct: 501 VWQRPILRGEKCELPRFSGLILYDEKGR 584
>TC208256 similar to UP|Q84RR0 (Q84RR0) ARIADNE-like protein ARI7, partial
(8%)
Length = 821
Score = 30.4 bits (67), Expect = 0.21
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 7/65 (10%)
Frame = -3
Query: 54 NKALSQFGK--MKKTKKQRDNELNDGVWQKEILMG-----GKCEPLDFSGVIHYDINGRQ 106
+ AL++F K + KQ+D + N+ +W+ I+M + L + IH+ GR
Sbjct: 297 SNALTKFSK*FLVTLPKQKD*KPNNTIWEGSIMMSY*NQIDRPRELTYGRYIHWGGGGRG 118
Query: 107 TGEVP 111
G++P
Sbjct: 117 RGQIP 103
>TC217776 similar to UP|Q93Y38 (Q93Y38) Transmembrane protein FT27/PFT27-like
(At5g36290), partial (76%)
Length = 1436
Score = 28.1 bits (61), Expect = 1.1
Identities = 15/57 (26%), Positives = 32/57 (55%), Gaps = 1/57 (1%)
Frame = -3
Query: 33 SRQARRLKGKAKTKKLLSNMSNKALSQFGKMKKTKKQRDNELNDG-VWQKEILMGGK 88
++ RLK K + +K+ +N LS+FG + + K+ + +L + ++ ++ GGK
Sbjct: 387 AKVGERLKNKERRRKMRRARTNLRLSKFGAIVRKKETVERKLTEKFIFLGKVERGGK 217
>TC212718 similar to UP|Q91CY9 (Q91CY9) ORF1, partial (4%)
Length = 428
Score = 28.1 bits (61), Expect = 1.1
Identities = 24/83 (28%), Positives = 34/83 (40%), Gaps = 2/83 (2%)
Frame = +3
Query: 3 NLTSSPESLSPKRQSNSSFFITISAILAMLSRQ--ARRLKGKAKTKKLLSNMSNKALSQF 60
N SS S S ++ A +A ++ RR K K KK N AL
Sbjct: 189 NFPSSSSSSSAAAANDGDGDEETKAFVAEMNENWNERRKGSKEKEKK----EENGALYSV 356
Query: 61 GKMKKTKKQRDNELNDGVWQKEI 83
MKK + + ++ G+W KEI
Sbjct: 357 ENMKKDYRLKKQRMHAGLWMKEI 425
>TC224385
Length = 491
Score = 27.3 bits (59), Expect = 1.8
Identities = 23/107 (21%), Positives = 47/107 (43%), Gaps = 7/107 (6%)
Frame = +2
Query: 6 SSPESLSPKRQSN--SSFFITISAILAMLSRQARRLKGKAKTKKLLSNMSNKALSQFG-- 61
S S + K QS +S +T + + +++ +R+ K+K K+ S+ A
Sbjct: 131 SPTTSATRKTQSRPFNSALVTAAVVPSVVVGYGKRMNKKSKRMKVKKRKSDNAFRGGAC* 310
Query: 62 -KMKKTKKQRDNELNDGVWQKE--ILMGGKCEPLDFSGVIHYDINGR 105
+ K+ +++ N ++ +L GG+C P V Y +N +
Sbjct: 311 SERKEEGRRK*NAATGNPLRRRYTVLRGGRCSPFSLCCVSCYRVNSQ 451
>TC216413 similar to UP|Q93VN2 (Q93VN2) At2g14841/At2g14841, partial (32%)
Length = 519
Score = 27.3 bits (59), Expect = 1.8
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = -3
Query: 87 GKCEPLDFSGVIHYDINGRQ 106
GK EPL+ SG+ + +NGRQ
Sbjct: 442 GKWEPLNISGL*EHSLNGRQ 383
>TC219816 similar to UP|Q8RY12 (Q8RY12) AT5g20600/F7C8_190, partial (10%)
Length = 822
Score = 26.9 bits (58), Expect = 2.4
Identities = 15/49 (30%), Positives = 28/49 (56%)
Frame = +1
Query: 34 RQARRLKGKAKTKKLLSNMSNKALSQFGKMKKTKKQRDNELNDGVWQKE 82
++ + LKGKA + A+++ G+ K TKK R + +N+ VW+ +
Sbjct: 178 KRTKSLKGKASQDSADLDGEESAVAKSGE-KSTKKVRFSMINNLVWKPQ 321
>TC234834
Length = 591
Score = 26.2 bits (56), Expect = 4.0
Identities = 17/57 (29%), Positives = 30/57 (51%), Gaps = 5/57 (8%)
Frame = +3
Query: 49 LSNMSNKALSQFGKMKKTKKQRDNELNDGVW-----QKEILMGGKCEPLDFSGVIHY 100
L + N++++ K+K+ K +D E+ + +KE+ +CE L FSGV Y
Sbjct: 387 LERIRNQSINLQSKIKRNKTIKDGEVINVTVSL*ERKKEMSRNKECEYLYFSGV*KY 557
>TC233038 similar to UP|Q8VYI7 (Q8VYI7) At1g80610/T21F11_6, partial (15%)
Length = 521
Score = 26.2 bits (56), Expect = 4.0
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = +3
Query: 15 RQSNSSFFITISAILAMLSRQARRLKGKAKTKKLLSNMSNKALSQFGKMK 64
R S S FF+ + + +A+ RR K + K L + SNK+ S F K
Sbjct: 3 RDSKSFFFLFMLSFVALCFSTVRR-KNASYFFKFLLSFSNKSSSAFSSAK 149
>CK605559
Length = 279
Score = 26.2 bits (56), Expect = 4.0
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +2
Query: 45 TKKLLSNMSNKALSQFGKMKKTKKQRDNELNDGVWQKEILMGG 87
TKK +NK ++ K KKT K +N N+ W ++ G
Sbjct: 113 TKKKKGGKNNKTINPLQKKKKTSKDYENPPNN-KWATQVAPPG 238
>CA850947 homologue to GP|27948861|gb| H {SEN virus}, partial (1%)
Length = 624
Score = 25.8 bits (55), Expect = 5.2
Identities = 14/61 (22%), Positives = 31/61 (49%), Gaps = 5/61 (8%)
Frame = -1
Query: 33 SRQARRLKGKAKTKKLLSNMSNKALSQFGK-----MKKTKKQRDNELNDGVWQKEILMGG 87
+R+ RR++ + + + L S + + + +K R+N+ N+G+W+ + GG
Sbjct: 225 ARRRRRVRRRVRRRGRLGCSSRRGFEGCNRH*RKNKRNCQKMRENDNNNGIWKGD---GG 55
Query: 88 K 88
K
Sbjct: 54 K 52
>TC228249 similar to UP|Q9M9V0 (Q9M9V0) F6A14.10 protein, partial (82%)
Length = 1066
Score = 25.8 bits (55), Expect = 5.2
Identities = 14/38 (36%), Positives = 21/38 (54%)
Frame = -1
Query: 5 TSSPESLSPKRQSNSSFFITISAILAMLSRQARRLKGK 42
TSSP LS K + +FF+ I A +R +R +G+
Sbjct: 151 TSSPSMLSSKFSATFNFFVLSPTIFA*NARFQKRGRGR 38
>TC219191 similar to UP|O49971 (O49971) Fimbrin-like protein AtFim2
(Fragment), partial (34%)
Length = 796
Score = 25.4 bits (54), Expect = 6.8
Identities = 14/57 (24%), Positives = 25/57 (43%)
Frame = +1
Query: 28 ILAMLSRQARRLKGKAKTKKLLSNMSNKALSQFGKMKKTKKQRDNELNDGVWQKEIL 84
IL +L +GK + +N +S G + +D L+DG++ E+L
Sbjct: 58 ILQLLKNLRFHSRGKEINDADIIEWANSKVSSSGSQSRMDSFKDKSLSDGIFFLELL 228
>TC212565 similar to UP|Q8LA44 (Q8LA44) Receptor protein kinase-like protein,
partial (24%)
Length = 1021
Score = 25.0 bits (53), Expect = 8.9
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = -2
Query: 42 KAKTKKLLSNMSNKALSQFGKMKKTKKQRDNEL 74
KA T K +KAL + KK+ KQR + L
Sbjct: 606 KASTSKFTPFGESKALEKLQNQKKSTKQRTSSL 508
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.315 0.130 0.363
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,325,275
Number of Sequences: 63676
Number of extensions: 43298
Number of successful extensions: 277
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 273
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 274
length of query: 123
length of database: 12,639,632
effective HSP length: 85
effective length of query: 38
effective length of database: 7,227,172
effective search space: 274632536
effective search space used: 274632536
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)
Medicago: description of AC142222.6