Medicago
BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC142222.6 - phase: 0 
         (123 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC219290 similar to UP|Q9M9A2 (Q9M9A2) F27J15.21 (At1g49000), pa...   118  6e-28
TC221966 similar to UP|Q9M9A2 (Q9M9A2) F27J15.21 (At1g49000), pa...    90  3e-19
BG509584 similar to GP|7770334|gb|A F27J15.21 {Arabidopsis thali...    60  3e-10
TC212945 weakly similar to UP|Q9M9H2 (Q9M9H2) F14O23.12, partial...    47  2e-06
TC210888 similar to UP|Q41051 (Q41051) Proline- and leucine-rich...    36  0.004
TC208256 similar to UP|Q84RR0 (Q84RR0) ARIADNE-like protein ARI7...    30  0.21
TC217776 similar to UP|Q93Y38 (Q93Y38) Transmembrane protein FT2...    28  1.1
TC212718 similar to UP|Q91CY9 (Q91CY9) ORF1, partial (4%)              28  1.1
TC224385                                                               27  1.8
TC216413 similar to UP|Q93VN2 (Q93VN2) At2g14841/At2g14841, part...    27  1.8
TC219816 similar to UP|Q8RY12 (Q8RY12) AT5g20600/F7C8_190, parti...    27  2.4
TC234834                                                               26  4.0
TC233038 similar to UP|Q8VYI7 (Q8VYI7) At1g80610/T21F11_6, parti...    26  4.0
CK605559                                                               26  4.0
CA850947 homologue to GP|27948861|gb| H {SEN virus}, partial (1%)      26  5.2
TC228249 similar to UP|Q9M9V0 (Q9M9V0) F6A14.10 protein, partial...    26  5.2
TC219191 similar to UP|O49971 (O49971) Fimbrin-like protein AtFi...    25  6.8
TC212565 similar to UP|Q8LA44 (Q8LA44) Receptor protein kinase-l...    25  8.9

>TC219290 similar to UP|Q9M9A2 (Q9M9A2) F27J15.21 (At1g49000), partial (32%)
          Length = 685

 Score =  118 bits (296), Expect = 6e-28
 Identities = 69/129 (53%), Positives = 85/129 (65%), Gaps = 17/129 (13%)
 Frame = +2

Query: 12  SPKRQSNSSFFITISAILAMLSRQAR--------RLKGKAKTKKLLSNMSNKALSQFGKM 63
           SPKR +++ F +TISAILA+L ++           LK  ++ KKLLSN+S+KAL  FG  
Sbjct: 86  SPKRHNHNGFIVTISAILALLKKRKAAVKASKEDELKKSSRPKKLLSNISSKAL--FGHK 259

Query: 64  KKTKKQ-RDNEL--------NDGVWQKEILMGGKCEPLDFSGVIHYDINGRQTGEVPLRS 114
           K  KKQ R  E         N GVWQKEILMGGKCEPL+FSGVI+YD NG+Q  ++PLRS
Sbjct: 260 KNNKKQLRSVEETQQAQGWGNGGVWQKEILMGGKCEPLNFSGVIYYDGNGKQLSQIPLRS 439

Query: 115 PRAIPFSRY 123
           PRA P   Y
Sbjct: 440 PRASPLPGY 466


>TC221966 similar to UP|Q9M9A2 (Q9M9A2) F27J15.21 (At1g49000), partial (29%)
          Length = 773

 Score = 89.7 bits (221), Expect = 3e-19
 Identities = 50/99 (50%), Positives = 62/99 (62%), Gaps = 7/99 (7%)
 Frame = +3

Query: 28  ILAMLSRQARRLKGKA-------KTKKLLSNMSNKALSQFGKMKKTKKQRDNELNDGVWQ 80
           +   +SR  RRL  +          KKLLSN+S+K L      +K K+  ++    GVWQ
Sbjct: 30  VXXXVSRLQRRLAVRXXWRMELRSPKKLLSNISSKTLP----FRKKKRGEEDWGKGGVWQ 197

Query: 81  KEILMGGKCEPLDFSGVIHYDINGRQTGEVPLRSPRAIP 119
           K ILMG KCEPLDFSGVI+YD NG+Q  E+PLRSPRA P
Sbjct: 198 KAILMGDKCEPLDFSGVIYYDSNGKQVNEMPLRSPRASP 314


>BG509584 similar to GP|7770334|gb|A F27J15.21 {Arabidopsis thaliana},
           partial (23%)
          Length = 327

 Score = 60.1 bits (144), Expect = 3e-10
 Identities = 26/34 (76%), Positives = 29/34 (84%)
 Frame = +2

Query: 86  GGKCEPLDFSGVIHYDINGRQTGEVPLRSPRAIP 119
           G KCEPLDFSGVI+YD NG+Q  E+PLRSPRA P
Sbjct: 2   GDKCEPLDFSGVIYYDSNGKQVNEMPLRSPRASP 103


>TC212945 weakly similar to UP|Q9M9H2 (Q9M9H2) F14O23.12, partial (15%)
          Length = 625

 Score = 47.0 bits (110), Expect = 2e-06
 Identities = 27/63 (42%), Positives = 37/63 (57%), Gaps = 8/63 (12%)
 Frame = +2

Query: 47  KLLSNMSNKALSQFGKMKKTKKQRDNELN--------DGVWQKEILMGGKCEPLDFSGVI 98
           KL SN++N+ALS   KM   +K R+ E+         + +W+K ILMG KC PL+FSG  
Sbjct: 224 KLNSNINNRALSMV-KMISWRKVREGEVEGDYSDQDEEALWRKNILMGEKCRPLNFSGKF 400

Query: 99  HYD 101
             D
Sbjct: 401 END 409


>TC210888 similar to UP|Q41051 (Q41051) Proline- and leucine-rich protein,
           partial (12%)
          Length = 771

 Score = 36.2 bits (82), Expect = 0.004
 Identities = 17/28 (60%), Positives = 19/28 (67%)
 Frame = +3

Query: 78  VWQKEILMGGKCEPLDFSGVIHYDINGR 105
           VWQ+ IL G KCE   FSG+I YD  GR
Sbjct: 501 VWQRPILRGEKCELPRFSGLILYDEKGR 584


>TC208256 similar to UP|Q84RR0 (Q84RR0) ARIADNE-like protein ARI7, partial
           (8%)
          Length = 821

 Score = 30.4 bits (67), Expect = 0.21
 Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 7/65 (10%)
 Frame = -3

Query: 54  NKALSQFGK--MKKTKKQRDNELNDGVWQKEILMG-----GKCEPLDFSGVIHYDINGRQ 106
           + AL++F K  +    KQ+D + N+ +W+  I+M       +   L +   IH+   GR 
Sbjct: 297 SNALTKFSK*FLVTLPKQKD*KPNNTIWEGSIMMSY*NQIDRPRELTYGRYIHWGGGGRG 118

Query: 107 TGEVP 111
            G++P
Sbjct: 117 RGQIP 103


>TC217776 similar to UP|Q93Y38 (Q93Y38) Transmembrane protein FT27/PFT27-like
           (At5g36290), partial (76%)
          Length = 1436

 Score = 28.1 bits (61), Expect = 1.1
 Identities = 15/57 (26%), Positives = 32/57 (55%), Gaps = 1/57 (1%)
 Frame = -3

Query: 33  SRQARRLKGKAKTKKLLSNMSNKALSQFGKMKKTKKQRDNELNDG-VWQKEILMGGK 88
           ++   RLK K + +K+    +N  LS+FG + + K+  + +L +  ++  ++  GGK
Sbjct: 387 AKVGERLKNKERRRKMRRARTNLRLSKFGAIVRKKETVERKLTEKFIFLGKVERGGK 217


>TC212718 similar to UP|Q91CY9 (Q91CY9) ORF1, partial (4%)
          Length = 428

 Score = 28.1 bits (61), Expect = 1.1
 Identities = 24/83 (28%), Positives = 34/83 (40%), Gaps = 2/83 (2%)
 Frame = +3

Query: 3   NLTSSPESLSPKRQSNSSFFITISAILAMLSRQ--ARRLKGKAKTKKLLSNMSNKALSQF 60
           N  SS  S S    ++        A +A ++     RR   K K KK      N AL   
Sbjct: 189 NFPSSSSSSSAAAANDGDGDEETKAFVAEMNENWNERRKGSKEKEKK----EENGALYSV 356

Query: 61  GKMKKTKKQRDNELNDGVWQKEI 83
             MKK  + +   ++ G+W KEI
Sbjct: 357 ENMKKDYRLKKQRMHAGLWMKEI 425


>TC224385 
          Length = 491

 Score = 27.3 bits (59), Expect = 1.8
 Identities = 23/107 (21%), Positives = 47/107 (43%), Gaps = 7/107 (6%)
 Frame = +2

Query: 6   SSPESLSPKRQSN--SSFFITISAILAMLSRQARRLKGKAKTKKLLSNMSNKALSQFG-- 61
           S   S + K QS   +S  +T + + +++    +R+  K+K  K+    S+ A       
Sbjct: 131 SPTTSATRKTQSRPFNSALVTAAVVPSVVVGYGKRMNKKSKRMKVKKRKSDNAFRGGAC* 310

Query: 62  -KMKKTKKQRDNELNDGVWQKE--ILMGGKCEPLDFSGVIHYDINGR 105
            + K+  +++ N       ++   +L GG+C P     V  Y +N +
Sbjct: 311 SERKEEGRRK*NAATGNPLRRRYTVLRGGRCSPFSLCCVSCYRVNSQ 451


>TC216413 similar to UP|Q93VN2 (Q93VN2) At2g14841/At2g14841, partial (32%)
          Length = 519

 Score = 27.3 bits (59), Expect = 1.8
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -3

Query: 87  GKCEPLDFSGVIHYDINGRQ 106
           GK EPL+ SG+  + +NGRQ
Sbjct: 442 GKWEPLNISGL*EHSLNGRQ 383


>TC219816 similar to UP|Q8RY12 (Q8RY12) AT5g20600/F7C8_190, partial (10%)
          Length = 822

 Score = 26.9 bits (58), Expect = 2.4
 Identities = 15/49 (30%), Positives = 28/49 (56%)
 Frame = +1

Query: 34  RQARRLKGKAKTKKLLSNMSNKALSQFGKMKKTKKQRDNELNDGVWQKE 82
           ++ + LKGKA       +    A+++ G+ K TKK R + +N+ VW+ +
Sbjct: 178 KRTKSLKGKASQDSADLDGEESAVAKSGE-KSTKKVRFSMINNLVWKPQ 321


>TC234834 
          Length = 591

 Score = 26.2 bits (56), Expect = 4.0
 Identities = 17/57 (29%), Positives = 30/57 (51%), Gaps = 5/57 (8%)
 Frame = +3

Query: 49  LSNMSNKALSQFGKMKKTKKQRDNELNDGVW-----QKEILMGGKCEPLDFSGVIHY 100
           L  + N++++   K+K+ K  +D E+ +        +KE+    +CE L FSGV  Y
Sbjct: 387 LERIRNQSINLQSKIKRNKTIKDGEVINVTVSL*ERKKEMSRNKECEYLYFSGV*KY 557


>TC233038 similar to UP|Q8VYI7 (Q8VYI7) At1g80610/T21F11_6, partial (15%)
          Length = 521

 Score = 26.2 bits (56), Expect = 4.0
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = +3

Query: 15 RQSNSSFFITISAILAMLSRQARRLKGKAKTKKLLSNMSNKALSQFGKMK 64
          R S S FF+ + + +A+     RR K  +   K L + SNK+ S F   K
Sbjct: 3  RDSKSFFFLFMLSFVALCFSTVRR-KNASYFFKFLLSFSNKSSSAFSSAK 149


>CK605559 
          Length = 279

 Score = 26.2 bits (56), Expect = 4.0
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +2

Query: 45  TKKLLSNMSNKALSQFGKMKKTKKQRDNELNDGVWQKEILMGG 87
           TKK     +NK ++   K KKT K  +N  N+  W  ++   G
Sbjct: 113 TKKKKGGKNNKTINPLQKKKKTSKDYENPPNN-KWATQVAPPG 238


>CA850947 homologue to GP|27948861|gb| H {SEN virus}, partial (1%)
          Length = 624

 Score = 25.8 bits (55), Expect = 5.2
 Identities = 14/61 (22%), Positives = 31/61 (49%), Gaps = 5/61 (8%)
 Frame = -1

Query: 33  SRQARRLKGKAKTKKLLSNMSNKALSQFGK-----MKKTKKQRDNELNDGVWQKEILMGG 87
           +R+ RR++ + + +  L   S +      +      +  +K R+N+ N+G+W+ +   GG
Sbjct: 225 ARRRRRVRRRVRRRGRLGCSSRRGFEGCNRH*RKNKRNCQKMRENDNNNGIWKGD---GG 55

Query: 88  K 88
           K
Sbjct: 54  K 52


>TC228249 similar to UP|Q9M9V0 (Q9M9V0) F6A14.10 protein, partial (82%)
          Length = 1066

 Score = 25.8 bits (55), Expect = 5.2
 Identities = 14/38 (36%), Positives = 21/38 (54%)
 Frame = -1

Query: 5   TSSPESLSPKRQSNSSFFITISAILAMLSRQARRLKGK 42
           TSSP  LS K  +  +FF+    I A  +R  +R +G+
Sbjct: 151 TSSPSMLSSKFSATFNFFVLSPTIFA*NARFQKRGRGR 38


>TC219191 similar to UP|O49971 (O49971) Fimbrin-like protein AtFim2
           (Fragment), partial (34%)
          Length = 796

 Score = 25.4 bits (54), Expect = 6.8
 Identities = 14/57 (24%), Positives = 25/57 (43%)
 Frame = +1

Query: 28  ILAMLSRQARRLKGKAKTKKLLSNMSNKALSQFGKMKKTKKQRDNELNDGVWQKEIL 84
           IL +L       +GK      +   +N  +S  G   +    +D  L+DG++  E+L
Sbjct: 58  ILQLLKNLRFHSRGKEINDADIIEWANSKVSSSGSQSRMDSFKDKSLSDGIFFLELL 228


>TC212565 similar to UP|Q8LA44 (Q8LA44) Receptor protein kinase-like protein,
           partial (24%)
          Length = 1021

 Score = 25.0 bits (53), Expect = 8.9
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -2

Query: 42  KAKTKKLLSNMSNKALSQFGKMKKTKKQRDNEL 74
           KA T K      +KAL +    KK+ KQR + L
Sbjct: 606 KASTSKFTPFGESKALEKLQNQKKSTKQRTSSL 508


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.315    0.130    0.363 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,325,275
Number of Sequences: 63676
Number of extensions: 43298
Number of successful extensions: 277
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 273
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 274
length of query: 123
length of database: 12,639,632
effective HSP length: 85
effective length of query: 38
effective length of database: 7,227,172
effective search space: 274632536
effective search space used: 274632536
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)


Medicago: description of AC142222.6