BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC142142.4 - phase: 0
(508 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BI942585 homologue to GP|27446507|gb photosystem II CP47 protein... 212 3e-55
TC232821 homologue to UP|PSBB_TOBAC (P06411) Photosystem II P680... 72 6e-13
AW100479 similar to GP|4138581|emb mitochondrial energy transfer... 31 1.1
TC213871 weakly similar to UP|Q9SSY8 (Q9SSY8) Hsr203J homolog, p... 30 2.0
TC209988 UP|Q6SSE1 (Q6SSE1) Photosystem II CP43 protein, partial... 30 2.6
BI969154 30 3.3
BE609434 29 5.7
AW596073 29 5.7
TC230176 similar to UP|Q6H6V3 (Q6H6V3) Zinc finger (C3HC4-type R... 28 7.4
TC228289 28 9.7
>BI942585 homologue to GP|27446507|gb photosystem II CP47 protein {Pisum
sativum}, partial (22%)
Length = 408
Score = 212 bits (540), Expect = 3e-55
Identities = 103/113 (91%), Positives = 105/113 (92%)
Frame = -1
Query: 394 QVGVTVEFFGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRSSPRGWFTF 453
QVGV VE +GGELNGV YSD ATVKKYARRAQ GEIFELDRATLKSDGVFRSS RGWFT
Sbjct: 408 QVGVIVELYGGELNGVRYSDTATVKKYARRAQ*GEIFELDRATLKSDGVFRSSQRGWFTL 229
Query: 454 GHASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKKQ 506
GHASFALLFFFGHIWHG RTL+RDVFAGIDPDLDAQVEFGAFQKLGDPTTKKQ
Sbjct: 228 GHASFALLFFFGHIWHGERTLYRDVFAGIDPDLDAQVEFGAFQKLGDPTTKKQ 70
>TC232821 homologue to UP|PSBB_TOBAC (P06411) Photosystem II P680 chlorophyll
A apoprotein (CP-47 protein), partial (7%)
Length = 288
Score = 72.0 bits (175), Expect = 6e-13
Identities = 33/34 (97%), Positives = 33/34 (97%)
Frame = +2
Query: 290 AGLAENQSLSEAWSKIPEKLAFYDYIGNNPAKGG 323
AGLAENQSL EAWSKIPEKLAFYDYIGNNPAKGG
Sbjct: 2 AGLAENQSLPEAWSKIPEKLAFYDYIGNNPAKGG 103
>AW100479 similar to GP|4138581|emb mitochondrial energy transfer protein
{Solanum tuberosum}, partial (29%)
Length = 374
Score = 31.2 bits (69), Expect = 1.1
Identities = 23/72 (31%), Positives = 37/72 (50%), Gaps = 1/72 (1%)
Frame = +1
Query: 223 QRLYKGLRMGNIETVLSSSIAAVFFAAFVVAGTMWYGSATTPIELFGPTRYQWDQGYFQ- 281
Q+++K ++GNIET+L S+A F + SAT P+E+ R Q G
Sbjct: 43 QKIFKEEKVGNIETLLIGSVAGAFSS-----------SATFPLEV---ARKQMQLGALSG 180
Query: 282 QEIYRRVGAGLA 293
+++Y+ V LA
Sbjct: 181 RQVYKNVFHALA 216
>TC213871 weakly similar to UP|Q9SSY8 (Q9SSY8) Hsr203J homolog, partial (11%)
Length = 582
Score = 30.4 bits (67), Expect = 2.0
Identities = 14/61 (22%), Positives = 27/61 (43%)
Frame = +3
Query: 59 GMFVIPFMTRLGITNSWGGWNITGGTITNPGIWSYEGVAAAHIVFSGLCFLAAIWHWVYW 118
G V R G+ + GG + G + +P +W + + + ++ C IW++ Y
Sbjct: 114 GNLVHNIAMRAGVEDLPGGVKVYGAYLNHPYLWGSKPIGSERVIGFEECNQCLIWNFAYP 293
Query: 119 D 119
D
Sbjct: 294 D 296
>TC209988 UP|Q6SSE1 (Q6SSE1) Photosystem II CP43 protein, partial (30%)
Length = 427
Score = 30.0 bits (66), Expect = 2.6
Identities = 22/76 (28%), Positives = 36/76 (46%)
Frame = +1
Query: 39 LYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITNSWGGWNITGGTITNPGIWSYEGVAA 98
L+E+A F P P M+ QG+ ++P + LG WG GG + + + GV
Sbjct: 1 LFEVAHFVPEKP----MYEQGLILLPHLATLG----WGVG--PGGEVIDTFPYFVSGV-- 144
Query: 99 AHIVFSGLCFLAAIWH 114
H++ S + I+H
Sbjct: 145 LHLISSAVLGFGGIYH 192
>BI969154
Length = 676
Score = 29.6 bits (65), Expect = 3.3
Identities = 17/59 (28%), Positives = 22/59 (36%)
Frame = -2
Query: 96 VAAAHIVFSGLCFLAAIWHWVYWDLEIFCDERTGKPSLDLPKIFGIHLFLAGVACFGFG 154
V HI+ + +A WH+ W L C S + F V CFGFG
Sbjct: 237 VVVPHIIVTRQ*IVAGPWHFFSWSLAFLC-------SFLQSSKYTYRSFFVWVDCFGFG 82
>BE609434
Length = 410
Score = 28.9 bits (63), Expect = 5.7
Identities = 18/37 (48%), Positives = 19/37 (50%), Gaps = 4/37 (10%)
Frame = +2
Query: 442 VFRSSPRGWFTFGHA----SFALLFFFGHIWHGARTL 474
VFRSSP F A SFAL FGH+W A L
Sbjct: 257 VFRSSPSSHFLQSMANNSRSFALEEAFGHVWRFAGAL 367
>AW596073
Length = 302
Score = 28.9 bits (63), Expect = 5.7
Identities = 14/34 (41%), Positives = 16/34 (46%)
Frame = +2
Query: 106 LCFLAAIWHWVYWDLEIFCDERTGKPSLDLPKIF 139
L FL+A W W+YW L C SL IF
Sbjct: 104 LMFLSASWPWLYWTLFFSCKCHN*AQSLKQVAIF 205
>TC230176 similar to UP|Q6H6V3 (Q6H6V3) Zinc finger (C3HC4-type RING finger)
protein-like, partial (28%)
Length = 1247
Score = 28.5 bits (62), Expect = 7.4
Identities = 19/52 (36%), Positives = 26/52 (49%)
Frame = -2
Query: 37 MALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITNSWGGWNITGGTITNP 88
MAL E + P+L+P W ++ R +S G WN GGT+TNP
Sbjct: 178 MALAEFGL--GGSPLLEPCW--------YLQRGEAWSSGGFWN-QGGTVTNP 56
>TC228289
Length = 1798
Score = 28.1 bits (61), Expect = 9.7
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 5/38 (13%)
Frame = +1
Query: 75 WGGWNI-----TGGTITNPGIWSYEGVAAAHIVFSGLC 107
WG N+ TG + + PGIW + AA ++ + LC
Sbjct: 451 WGFTNVEEILRTGKSASAPGIWLLAQLVAAKVIATALC 564
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.325 0.143 0.469
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,280,655
Number of Sequences: 63676
Number of extensions: 374391
Number of successful extensions: 2125
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 2115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2125
length of query: 508
length of database: 12,639,632
effective HSP length: 101
effective length of query: 407
effective length of database: 6,208,356
effective search space: 2526800892
effective search space used: 2526800892
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 61 (28.1 bits)
Medicago: description of AC142142.4