BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC142142.2 + phase: 0
(119 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC225317 UP|Q8MCA4 (Q8MCA4) Ribosomal protein L16, partial (97%) 225 2e-60
TC225324 homologue to UP|RK2_PHAAN (Q8LVH2) Chloroplast 50S ribo... 162 3e-41
BE023345 29 0.27
TC224440 similar to UP|Q9FKY1 (Q9FKY1) Similarity to ribonucleop... 28 0.61
TC220328 26 2.3
TC217484 26 3.0
TC232539 similar to UP|Q7XA53 (Q7XA53) Sucrose transporter, part... 26 3.0
TC218620 similar to UP|Q8GUA8 (Q8GUA8) Ornithine aminotransferas... 25 3.9
AW472442 similar to PIR|T07790|T07 transaldolase (EC 2.2.1.2) - ... 25 3.9
TC229765 similar to UP|Q7NHE2 (Q7NHE2) Gll2595 protein, partial ... 25 5.2
TC229482 similar to UP|Q9LVE5 (Q9LVE5) Gb|AAB61516.1, partial (44%) 25 5.2
TC224196 25 5.2
TC208057 similar to UP|Q9FIU5 (Q9FIU5) Serine/threonine-specific... 25 5.2
TC216538 25 5.2
TC225886 similar to UP|Q9LRE9 (Q9LRE9) Cytosolic aldehyde dehydr... 25 6.7
CO981600 25 6.7
>TC225317 UP|Q8MCA4 (Q8MCA4) Ribosomal protein L16, partial (97%)
Length = 1475
Score = 225 bits (574), Expect = 2e-60
Identities = 110/118 (93%), Positives = 115/118 (97%)
Frame = +1
Query: 1 MKGKAYRGNTISFGKYALQALEPAWITSRQIEAGRRAMSRNVRRGGKIWVRIFPDKPVTV 60
MKG +YRGN I FG+YALQALEPAWITSRQIEAGRRAMSRNVRRGG+IWVRIFPDKPVTV
Sbjct: 409 MKGISYRGNHICFGRYALQALEPAWITSRQIEAGRRAMSRNVRRGGQIWVRIFPDKPVTV 588
Query: 61 RPTETRMGSGKGSPEYWVAVVKPGKILYEMGGVPENIARKAISIAASKMPIRTQFILS 118
RPTETRMGSGKGSPEYWVAVVKPGKILYEMGGVPENIARKAISIA+SKMPIRTQFI+S
Sbjct: 589 RPTETRMGSGKGSPEYWVAVVKPGKILYEMGGVPENIARKAISIASSKMPIRTQFIIS 762
>TC225324 homologue to UP|RK2_PHAAN (Q8LVH2) Chloroplast 50S ribosomal protein
L2, complete
Length = 5107
Score = 162 bits (409), Expect = 3e-41
Identities = 77/83 (92%), Positives = 80/83 (95%)
Frame = +2
Query: 1 MKGKAYRGNTISFGKYALQALEPAWITSRQIEAGRRAMSRNVRRGGKIWVRIFPDKPVTV 60
MKG +YRGN I FG+YALQALEPAWITSRQIEAGRRAMSRNVRRGG+IWVRIFPDKPVTV
Sbjct: 4859 MKGISYRGNHICFGRYALQALEPAWITSRQIEAGRRAMSRNVRRGGQIWVRIFPDKPVTV 5038
Query: 61 RPTETRMGSGKGSPEYWVAVVKP 83
RPTETRMGSGKGSPEYWVAVVKP
Sbjct: 5039 RPTETRMGSGKGSPEYWVAVVKP 5107
>BE023345
Length = 378
Score = 29.3 bits (64), Expect = 0.27
Identities = 20/58 (34%), Positives = 24/58 (40%), Gaps = 11/58 (18%)
Frame = -3
Query: 29 RQIEAGRRAMSRNVRRGGKIW---VRIFPDKPVTVRPTET--------RMGSGKGSPE 75
R GRR R V RGG +W R D+ RP +T R SG+ PE
Sbjct: 223 RSESRGRRNQPREVLRGGSVWGRSCRAIQDRGRGARPLKTPSKRRRW*RWNSGRKPPE 50
>TC224440 similar to UP|Q9FKY1 (Q9FKY1) Similarity to ribonucleoprotein F,
partial (46%)
Length = 542
Score = 28.1 bits (61), Expect = 0.61
Identities = 14/43 (32%), Positives = 22/43 (50%)
Frame = +1
Query: 24 AWITSRQIEAGRRAMSRNVRRGGKIWVRIFPDKPVTVRPTETR 66
A++ E +RAMS++ G +V +FP P R E+R
Sbjct: 265 AYVEFVSAEEAKRAMSKDKMTIGSRYVELFPSTPDEARRAESR 393
>TC220328
Length = 789
Score = 26.2 bits (56), Expect = 2.3
Identities = 16/59 (27%), Positives = 26/59 (43%)
Frame = +2
Query: 20 ALEPAWITSRQIEAGRRAMSRNVRRGGKIWVRIFPDKPVTVRPTETRMGSGKGSPEYWV 78
AL +W T + +S +R GG I++ PD V ++ G G+ YW+
Sbjct: 56 ALHYSWSTEARARQALANVSALLRPGG-IFIGTMPDANVIIKKLREAEGLTFGNRVYWL 229
>TC217484
Length = 1651
Score = 25.8 bits (55), Expect = 3.0
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +1
Query: 24 AWITSRQIEAGRRAMSRNVRRG 45
AW+ R+ +AGRR+ R+ +RG
Sbjct: 28 AWLHRRRAQAGRRSPRRHPQRG 93
>TC232539 similar to UP|Q7XA53 (Q7XA53) Sucrose transporter, partial (25%)
Length = 591
Score = 25.8 bits (55), Expect = 3.0
Identities = 14/40 (35%), Positives = 18/40 (45%)
Frame = -3
Query: 7 RGNTISFGKYALQALEPAWITSRQIEAGRRAMSRNVRRGG 46
RG G+Y+ + P W R + RRA R RGG
Sbjct: 418 RGACDQSGRYSGRCSSPQWAVPRARKWARRAR*RRPPRGG 299
>TC218620 similar to UP|Q8GUA8 (Q8GUA8) Ornithine aminotransferase , partial
(49%)
Length = 960
Score = 25.4 bits (54), Expect = 3.9
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = -3
Query: 12 SFGKYALQALEPAWITSRQIEAG 34
S + + + LEP WI+SR +++G
Sbjct: 613 SISRTSARTLEPCWISSRLMQSG 545
>AW472442 similar to PIR|T07790|T07 transaldolase (EC 2.2.1.2) - potato,
partial (31%)
Length = 454
Score = 25.4 bits (54), Expect = 3.9
Identities = 11/37 (29%), Positives = 19/37 (50%)
Frame = -3
Query: 15 KYALQALEPAWITSRQIEAGRRAMSRNVRRGGKIWVR 51
+Y L L AW+ R+++ + R R+G W+R
Sbjct: 383 QYMLAGLGLAWLIQRRVQ*EEPHIRRQNRQGSSHWLR 273
>TC229765 similar to UP|Q7NHE2 (Q7NHE2) Gll2595 protein, partial (5%)
Length = 1012
Score = 25.0 bits (53), Expect = 5.2
Identities = 13/42 (30%), Positives = 23/42 (53%)
Frame = +1
Query: 71 KGSPEYWVAVVKPGKILYEMGGVPENIARKAISIAASKMPIR 112
+G E W+A+V KIL E+ P +A S+ ++ + +R
Sbjct: 298 RGENELWLAMVLRNKILLEL--KPAQLAAVCASLVSAGIKVR 417
>TC229482 similar to UP|Q9LVE5 (Q9LVE5) Gb|AAB61516.1, partial (44%)
Length = 655
Score = 25.0 bits (53), Expect = 5.2
Identities = 12/32 (37%), Positives = 19/32 (58%)
Frame = +3
Query: 70 GKGSPEYWVAVVKPGKILYEMGGVPENIARKA 101
G GSP + +AVV ++Y+ GV + R+A
Sbjct: 36 GAGSPAFAIAVVLACIVMYDATGVRLHAGRQA 131
>TC224196
Length = 726
Score = 25.0 bits (53), Expect = 5.2
Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Frame = -3
Query: 42 VRRGGKIWVRIFPDKPVTVRPTETRMGSGKGSPEYWVAVVKPGKILYEMGGVP-ENIARK 100
+ + W +P + ETR GSG S + ++++P + GVP I +
Sbjct: 601 IEKNCNAWGLALSARPAMMLFQETRSGSGI*SNRFNASLIRPCLAWSKNEGVP*SGIFTQ 422
Query: 101 AISIAASKMP 110
+A+ K+P
Sbjct: 421 KTRLASLKLP 392
>TC208057 similar to UP|Q9FIU5 (Q9FIU5) Serine/threonine-specific protein
kinase-like protein, partial (45%)
Length = 691
Score = 25.0 bits (53), Expect = 5.2
Identities = 17/63 (26%), Positives = 28/63 (43%)
Frame = +2
Query: 33 AGRRAMSRNVRRGGKIWVRIFPDKPVTVRPTETRMGSGKGSPEYWVAVVKPGKILYEMGG 92
+ RRA + +R G I D T+ P E+ + SG+ +W+ K + G
Sbjct: 218 SSRRAHTIPIRENGVDSCNILSDS--TLGP-ESPVRSGRNGMSFWLDGFKKSSNMVSASG 388
Query: 93 VPE 95
+PE
Sbjct: 389 IPE 397
>TC216538
Length = 523
Score = 25.0 bits (53), Expect = 5.2
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = -3
Query: 38 MSRNVRRGGKIWVRIFPDKPVTVRP 62
+S + GKI VR FP P ++ P
Sbjct: 221 LSFTISSSGKIMVRNFPSTPFSIEP 147
>TC225886 similar to UP|Q9LRE9 (Q9LRE9) Cytosolic aldehyde dehydrogenase,
partial (70%)
Length = 1322
Score = 24.6 bits (52), Expect = 6.7
Identities = 16/51 (31%), Positives = 24/51 (46%), Gaps = 1/51 (1%)
Frame = -2
Query: 56 KPVTVRPTETRMGSGKGSPEYWVAV-VKPGKILYEMGGVPENIARKAISIA 105
+PV V P + + + AV PG L G+P N+AR A++ A
Sbjct: 334 RPVCVEPVKLTLSTSMCELNAAPAVGPNPGTTLITPSGIPANLAR*ALNKA 182
>CO981600
Length = 852
Score = 24.6 bits (52), Expect = 6.7
Identities = 13/42 (30%), Positives = 23/42 (53%)
Frame = -2
Query: 71 KGSPEYWVAVVKPGKILYEMGGVPENIARKAISIAASKMPIR 112
+G E W+A+V KIL E+ P +A S+ ++ + +R
Sbjct: 680 RGENELWLAMVLCSKILLEL--KPAQLAAVCASLVSAGIKVR 561
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.319 0.135 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,631,218
Number of Sequences: 63676
Number of extensions: 55558
Number of successful extensions: 245
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 245
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 245
length of query: 119
length of database: 12,639,632
effective HSP length: 95
effective length of query: 24
effective length of database: 6,590,412
effective search space: 158169888
effective search space used: 158169888
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)
Medicago: description of AC142142.2