BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC142096.4 - phase: 0 /pseudo
(213 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC231948 similar to UP|Q6NNI3 (Q6NNI3) At5g28490, partial (69%) 254 3e-68
TC230769 homologue to GB|AAO39968.1|28372972|BT003740 At2g42610 ... 225 1e-59
TC207046 homologue to GB|AAO39968.1|28372972|BT003740 At2g42610 ... 223 7e-59
TC208163 similar to GB|AAO39968.1|28372972|BT003740 At2g42610 {A... 219 6e-58
BE806044 208 1e-54
TC210507 similar to UP|Q9LW68 (Q9LW68) Gb|AAC63835.1, partial (48%) 197 4e-51
TC209036 similar to UP|Q9LW68 (Q9LW68) Gb|AAC63835.1, partial (49%) 190 6e-50
TC222458 similar to UP|Q9ZVA0 (Q9ZVA0) F9K20.14 protein, partial... 177 2e-45
TC224273 similar to UP|Q6NNI3 (Q6NNI3) At5g28490, partial (51%) 171 2e-43
TC211128 similar to UP|Q9LW68 (Q9LW68) Gb|AAC63835.1, partial (47%) 167 3e-42
BF068247 165 2e-41
TC213963 homologue to UP|O82268 (O82268) Expressed protein (At2g... 157 4e-39
TC212886 homologue to UP|O82268 (O82268) Expressed protein (At2g... 152 1e-37
BF068253 weakly similar to GP|15912211|gb| At2g31160/T16B12.3 {A... 144 3e-35
TC233957 similar to UP|Q9LW68 (Q9LW68) Gb|AAC63835.1, partial (35%) 124 3e-29
BQ094876 121 3e-28
BI787777 similar to GP|15912211|gb| At2g31160/T16B12.3 {Arabidop... 118 2e-27
BE440561 107 5e-24
AI736368 homologue to GP|6691165|gb|A 177 protein {Arabidopsis t... 97 5e-21
TC211999 similar to UP|Q9FGH2 (Q9FGH2) Gb|AAC63835.1 (At5g58500)... 82 2e-16
>TC231948 similar to UP|Q6NNI3 (Q6NNI3) At5g28490, partial (69%)
Length = 1023
Score = 254 bits (648), Expect = 3e-68
Identities = 123/172 (71%), Positives = 138/172 (79%)
Frame = +3
Query: 27 NPSSSMTMTIPSSSTTSASSSSTATTSPPSTTSTTTPSRYENQKRRDWNTFGQYLRNHRP 86
NP ++ S + + S+ + + +TTTPSRYENQKRRDWNTF QYLRN RP
Sbjct: 357 NPVRKHQISTMESVASPMITCSSNNNNGSGSNNTTTPSRYENQKRRDWNTFCQYLRNQRP 536
Query: 87 PLSLSRCSGAHVLEFLRYLDQFGKTKVHTLICPFYGHPNPPASCPCPLRQAWGSLDALIG 146
PLSL+ CSGAHVLEFL+YLDQFGKTKVH CPF+G PNPPA CPCPLRQAWGSLDALIG
Sbjct: 537 PLSLALCSGAHVLEFLQYLDQFGKTKVHNPPCPFFGLPNPPAPCPCPLRQAWGSLDALIG 716
Query: 147 RLRAAFEENGGKPEANPFGARAVRLYLREVRDSQAKARGISYEKKKRKRPPQ 198
RLRAA+EENGG+PE NPFGARAVRLYL +VRD QAKARG+SYE KKRKRP Q
Sbjct: 717 RLRAAYEENGGRPETNPFGARAVRLYLHDVRDFQAKARGVSYE-KKRKRPKQ 869
>TC230769 homologue to GB|AAO39968.1|28372972|BT003740 At2g42610 {Arabidopsis
thaliana;} , partial (76%)
Length = 852
Score = 225 bits (574), Expect = 1e-59
Identities = 108/165 (65%), Positives = 126/165 (75%)
Frame = +2
Query: 29 SSSMTMTIPSSSTTSASSSSTATTSPPSTTSTTTPSRYENQKRRDWNTFGQYLRNHRPPL 88
S+ TM+ S T SSS+ S T SRYE+QKRRDWNTFGQYL+N RPP+
Sbjct: 17 STISTMSSSGSHGTEGSSSNIPIEYQQQQQSPVTLSRYESQKRRDWNTFGQYLKNQRPPV 196
Query: 89 SLSRCSGAHVLEFLRYLDQFGKTKVHTLICPFYGHPNPPASCPCPLRQAWGSLDALIGRL 148
LS+C+ HVL+FLRYLDQFGKTKVH C FYG P PPA C CPLRQAWGSLDALIGRL
Sbjct: 197 PLSQCNCNHVLDFLRYLDQFGKTKVHLQGCMFYGQPEPPAPCACPLRQAWGSLDALIGRL 376
Query: 149 RAAFEENGGKPEANPFGARAVRLYLREVRDSQAKARGISYEKKKR 193
RAA+EENGG PE NPF + ++R+YLREVR+ QAKARGI+Y+KKK+
Sbjct: 377 RAAYEENGGSPETNPFASGSIRVYLREVRECQAKARGIAYKKKKK 511
>TC207046 homologue to GB|AAO39968.1|28372972|BT003740 At2g42610 {Arabidopsis
thaliana;} , partial (76%)
Length = 1077
Score = 223 bits (567), Expect = 7e-59
Identities = 109/198 (55%), Positives = 141/198 (71%), Gaps = 2/198 (1%)
Frame = +3
Query: 2 NSLQEFESSTNNKDMMNTNPMINITNPSSSMTMTIPSSSTTSASSSSTATTSPPST--TS 59
+S F ++ + + N+ P+++I N + + S++S+ ++SP S
Sbjct: 21 SSPYSFHLASFHPPLFNSFPLLSIYNLYIFIIHHHHNMSSSSSKDFGEGSSSPTDNYQQS 200
Query: 60 TTTPSRYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTLICP 119
T SRYE+QKRRDWNTFGQYL+N RPP+ LS+C+ HVL+FLRYLDQFGKTKVH C
Sbjct: 201 PGTLSRYESQKRRDWNTFGQYLKNQRPPVPLSQCNCNHVLDFLRYLDQFGKTKVHLQGCM 380
Query: 120 FYGHPNPPASCPCPLRQAWGSLDALIGRLRAAFEENGGKPEANPFGARAVRLYLREVRDS 179
FYG P PPA C CPLRQAWGSLDALIGRLRAA+EENGG PE NPF + ++R+YL+E+R+
Sbjct: 381 FYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGSPETNPFASGSIRVYLKEIREC 560
Query: 180 QAKARGISYEKKKRKRPP 197
QAKARGI Y+KKK+ P
Sbjct: 561 QAKARGIPYKKKKKASNP 614
>TC208163 similar to GB|AAO39968.1|28372972|BT003740 At2g42610 {Arabidopsis
thaliana;} , partial (75%)
Length = 735
Score = 219 bits (559), Expect = 6e-58
Identities = 107/157 (68%), Positives = 123/157 (78%), Gaps = 2/157 (1%)
Frame = +2
Query: 41 TTSASSSSTATTSPP--STTSTTTPSRYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHV 98
T SASSS A S + SRYE+QKRRDWNTFGQYL+N PP+SLS+C+ HV
Sbjct: 236 TDSASSSRAAAASDQRHQQPAAAPLSRYESQKRRDWNTFGQYLKNQTPPVSLSQCNFNHV 415
Query: 99 LEFLRYLDQFGKTKVHTLICPFYGHPNPPASCPCPLRQAWGSLDALIGRLRAAFEENGGK 158
LEFLRYLDQFGKTKVH C F+G P+PPA C CPLRQAWGSLDALIGRLRAA+EE GG
Sbjct: 416 LEFLRYLDQFGKTKVHLHGCIFFGQPDPPAPCTCPLRQAWGSLDALIGRLRAAYEERGGS 595
Query: 159 PEANPFGARAVRLYLREVRDSQAKARGISYEKKKRKR 195
PE NPFG+ A+R+YLREV++ QAKARGI Y KKK+K+
Sbjct: 596 PETNPFGSGAIRVYLREVKECQAKARGIPYIKKKKKK 706
>BE806044
Length = 413
Score = 208 bits (530), Expect = 1e-54
Identities = 95/134 (70%), Positives = 111/134 (81%)
Frame = +2
Query: 64 SRYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTLICPFYGH 123
SRYE+QKRRDWNTFGQYLRN PP+ LS+C+ HVL+FLRYLDQFGKTKVH C F+G
Sbjct: 5 SRYESQKRRDWNTFGQYLRNQSPPVPLSQCNFNHVLDFLRYLDQFGKTKVHLHGCIFFGQ 184
Query: 124 PNPPASCPCPLRQAWGSLDALIGRLRAAFEENGGKPEANPFGARAVRLYLREVRDSQAKA 183
P PPA C CPLRQAWGSLDALIGRLRAA+EE+GG PE NPFG A+R+YLREV++ AKA
Sbjct: 185 PTPPAPCACPLRQAWGSLDALIGRLRAAYEEHGGSPETNPFGGGAIRVYLREVKECXAKA 364
Query: 184 RGISYEKKKRKRPP 197
RGI Y+K++ + P
Sbjct: 365 RGIPYKKEEEEEKP 406
>TC210507 similar to UP|Q9LW68 (Q9LW68) Gb|AAC63835.1, partial (48%)
Length = 598
Score = 197 bits (500), Expect = 4e-51
Identities = 96/140 (68%), Positives = 110/140 (78%)
Frame = +3
Query: 1 MNSLQEFESSTNNKDMMNTNPMINITNPSSSMTMTIPSSSTTSASSSSTATTSPPSTTST 60
MNS QEF+SS N D +T +IN T+ +S+ P S++S SS S++ T
Sbjct: 204 MNSFQEFDSS--NTDSNSTKAIINFTSGNSTNFPPAPPPSSSSPPCSS-------SSSGT 356
Query: 61 TTPSRYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTLICPF 120
TT SRYENQKRRDWNTFGQYLRNHRPPLSL+RCSGAHVLEFLRYLDQFGKTKVHT +CPF
Sbjct: 357 TTLSRYENQKRRDWNTFGQYLRNHRPPLSLARCSGAHVLEFLRYLDQFGKTKVHTQLCPF 536
Query: 121 YGHPNPPASCPCPLRQAWGS 140
+GHPNPPA+CPCPLRQAWGS
Sbjct: 537 FGHPNPPAACPCPLRQAWGS 596
>TC209036 similar to UP|Q9LW68 (Q9LW68) Gb|AAC63835.1, partial (49%)
Length = 869
Score = 190 bits (482), Expect(2) = 6e-50
Identities = 87/94 (92%), Positives = 89/94 (94%)
Frame = +1
Query: 109 GKTKVHTLICPFYGHPNPPASCPCPLRQAWGSLDALIGRLRAAFEENGGKPEANPFGARA 168
GKTKVHT ICPFYGHPNPPA CPCPLRQAWGSLDALIGRLRAAFEENGGKPE NPFGARA
Sbjct: 1 GKTKVHTPICPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGKPETNPFGARA 180
Query: 169 VRLYLREVRDSQAKARGISYEKKKRKRPPQPPPP 202
VRLYLREVR+ Q+KARGISYEKKKRKRPP PPPP
Sbjct: 181 VRLYLREVRELQSKARGISYEKKKRKRPPPPPPP 282
Score = 24.6 bits (52), Expect(2) = 6e-50
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = +3
Query: 197 PQPPPPPPS 205
P PPPPPPS
Sbjct: 321 PPPPPPPPS 347
>TC222458 similar to UP|Q9ZVA0 (Q9ZVA0) F9K20.14 protein, partial (61%)
Length = 507
Score = 177 bits (450), Expect = 2e-45
Identities = 80/106 (75%), Positives = 89/106 (83%)
Frame = +1
Query: 64 SRYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTLICPFYGH 123
SRYE+QKRRDWNTFGQYLRN RPP++LS+CS HVLEFLRYLDQFGKTKVH+ C F+G
Sbjct: 190 SRYESQKRRDWNTFGQYLRNQRPPVALSQCSSNHVLEFLRYLDQFGKTKVHSQGCLFFGQ 369
Query: 124 PNPPASCPCPLRQAWGSLDALIGRLRAAFEENGGKPEANPFGARAV 169
PP C CPLRQAWGSLDALIGRLRAA+EENGG PE NPF + +
Sbjct: 370 TEPPGPCTCPLRQAWGSLDALIGRLRAAYEENGGLPETNPFASGTI 507
>TC224273 similar to UP|Q6NNI3 (Q6NNI3) At5g28490, partial (51%)
Length = 723
Score = 171 bits (433), Expect = 2e-43
Identities = 78/105 (74%), Positives = 90/105 (85%)
Frame = +1
Query: 99 LEFLRYLDQFGKTKVHTLICPFYGHPNPPASCPCPLRQAWGSLDALIGRLRAAFEENGGK 158
L+FL YLDQF KTKVH CPF+G PNPPA CPCPLRQAWGSLDALIGRLRAA+EENGG+
Sbjct: 1 LKFLHYLDQFWKTKVHNHPCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGR 180
Query: 159 PEANPFGARAVRLYLREVRDSQAKARGISYEKKKRKRPPQPPPPP 203
PE NPF ARAVR+YLR+VRD QAKARG+SY+KK+++ P+ P P
Sbjct: 181 PETNPFCARAVRIYLRDVRDFQAKARGVSYDKKRKRPKPKVTPTP 315
>TC211128 similar to UP|Q9LW68 (Q9LW68) Gb|AAC63835.1, partial (47%)
Length = 466
Score = 167 bits (423), Expect = 3e-42
Identities = 76/91 (83%), Positives = 84/91 (91%)
Frame = -2
Query: 105 LDQFGKTKVHTLICPFYGHPNPPASCPCPLRQAWGSLDALIGRLRAAFEENGGKPEANPF 164
LDQFGKTKVH CP+YG+PNPPA C CPL+QAWGSLDALIGRLRAA+EENGG+PE+NPF
Sbjct: 465 LDQFGKTKVHITGCPYYGYPNPPAPCACPLKQAWGSLDALIGRLRAAYEENGGRPESNPF 286
Query: 165 GARAVRLYLREVRDSQAKARGISYEKKKRKR 195
GARAVR+YLREVR+ QAKARGI YEKKKRKR
Sbjct: 285 GARAVRIYLREVREGQAKARGIPYEKKKRKR 193
>BF068247
Length = 302
Score = 165 bits (417), Expect = 2e-41
Identities = 74/89 (83%), Positives = 81/89 (90%)
Frame = +3
Query: 64 SRYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTLICPFYGH 123
SRYE+QKRRDWNTFGQYL+NHRPPL+LSRCSGAHVLEFLRYLDQFGKTKVH C ++G+
Sbjct: 36 SRYESQKRRDWNTFGQYLKNHRPPLTLSRCSGAHVLEFLRYLDQFGKTKVHAETCGYFGN 215
Query: 124 PNPPASCPCPLRQAWGSLDALIGRLRAAF 152
+PP C CPLRQAWGSLDALIGRLRAAF
Sbjct: 216 YHPPGPCACPLRQAWGSLDALIGRLRAAF 302
>TC213963 homologue to UP|O82268 (O82268) Expressed protein
(At2g31160/T16B12.3), partial (34%)
Length = 502
Score = 157 bits (396), Expect = 4e-39
Identities = 72/74 (97%), Positives = 72/74 (97%)
Frame = -1
Query: 105 LDQFGKTKVHTLICPFYGHPNPPASCPCPLRQAWGSLDALIGRLRAAFEENGGKPEANPF 164
LDQFGKTKVHT ICPFYGHPNPPA CPCPLRQAWGSLDALIGRLRAAFEENGGKPEANPF
Sbjct: 394 LDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGKPEANPF 215
Query: 165 GARAVRLYLREVRD 178
GARAVRLYLREVRD
Sbjct: 214 GARAVRLYLREVRD 173
>TC212886 homologue to UP|O82268 (O82268) Expressed protein
(At2g31160/T16B12.3), partial (31%)
Length = 574
Score = 152 bits (384), Expect = 1e-37
Identities = 75/80 (93%), Positives = 76/80 (94%)
Frame = +3
Query: 130 CPCPLRQAWGSLDALIGRLRAAFEENGGKPEANPFGARAVRLYLREVRDSQAKARGISYE 189
CPCPLRQAWGSLDALIGRLRAAFEENGGKPEANPFGARAVRLYLRE RDSQAKARGISYE
Sbjct: 15 CPCPLRQAWGSLDALIGRLRAAFEENGGKPEANPFGARAVRLYLREGRDSQAKARGISYE 194
Query: 190 KKKRKRPPQPPPPPPSNNAT 209
KKKRKR PQ PP PPSNNA+
Sbjct: 195 KKKRKR-PQQPPLPPSNNAS 251
>BF068253 weakly similar to GP|15912211|gb| At2g31160/T16B12.3 {Arabidopsis
thaliana}, partial (41%)
Length = 454
Score = 144 bits (363), Expect = 3e-35
Identities = 68/122 (55%), Positives = 82/122 (66%)
Frame = +2
Query: 76 TFGQYLRNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTLICPFYGHPNPPASCPCPLR 135
T QY NHRPPL+LSRC+GAHVLEFLRYLDQ GKTKVH C +YG+ +PP C CPLR
Sbjct: 17 TLDQYPINHRPPLTLSRCNGAHVLEFLRYLDQDGKTKVHAETCGYYGNSHPPGPCTCPLR 196
Query: 136 QAWGSLDALIGRLRAAFEENGGKPEANPFGARAVRLYLREVRDSQAKARGISYEKKKRKR 195
QAWGS + L GRL + +EENGG P+ N G RA + E D+ ++ G + KK K
Sbjct: 197 QAWGSTNTLNGRLHSPYEENGGTPDTNTDGTRAEKWNTTEATDTHRQSTGKARSKKTSKN 376
Query: 196 PP 197
P
Sbjct: 377 EP 382
>TC233957 similar to UP|Q9LW68 (Q9LW68) Gb|AAC63835.1, partial (35%)
Length = 530
Score = 124 bits (311), Expect = 3e-29
Identities = 57/69 (82%), Positives = 63/69 (90%)
Frame = -2
Query: 127 PASCPCPLRQAWGSLDALIGRLRAAFEENGGKPEANPFGARAVRLYLREVRDSQAKARGI 186
PA C CPL+QAWGSLDALIGRLRAAFEENGG+PE+NPF RAVR+YL+EVR+ QAKARGI
Sbjct: 529 PAPCACPLKQAWGSLDALIGRLRAAFEENGGRPESNPFATRAVRIYLKEVREGQAKARGI 350
Query: 187 SYEKKKRKR 195
YEKKKRKR
Sbjct: 349 PYEKKKRKR 323
>BQ094876
Length = 424
Score = 121 bits (303), Expect = 3e-28
Identities = 55/95 (57%), Positives = 70/95 (72%)
Frame = +2
Query: 28 PSSSMTMTIPSSSTTSASSSSTATTSPPSTTSTTTPSRYENQKRRDWNTFGQYLRNHRPP 87
P ++ P S +SA ++S + P +S SRYE+QKRRDWNTF QYL+NHRPP
Sbjct: 140 PPQPTSVEAPPPSGSSAPATSAPAPTQPEGSSPAPLSRYESQKRRDWNTFLQYLQNHRPP 319
Query: 88 LSLSRCSGAHVLEFLRYLDQFGKTKVHTLICPFYG 122
L+L+RCSGAHV+EFL+YLDQFGKTKVH CP++G
Sbjct: 320 LTLARCSGAHVIEFLKYLDQFGKTKVHVTGCPYFG 424
>BI787777 similar to GP|15912211|gb| At2g31160/T16B12.3 {Arabidopsis
thaliana}, partial (26%)
Length = 405
Score = 118 bits (295), Expect = 2e-27
Identities = 57/82 (69%), Positives = 68/82 (82%)
Frame = +2
Query: 31 SMTMTIPSSSTTSASSSSTATTSPPSTTSTTTPSRYENQKRRDWNTFGQYLRNHRPPLSL 90
S I +++ T+ S+S +++ PS +STT+ SR ENQKRRDWNTFGQYL+NHRPPLSL
Sbjct: 161 SCNTDITTTTATTTSNSLVGSSNSPSASSTTS-SRCENQKRRDWNTFGQYLKNHRPPLSL 337
Query: 91 SRCSGAHVLEFLRYLDQFGKTK 112
SRCSGAHVLEFLRYLDQFGKTK
Sbjct: 338 SRCSGAHVLEFLRYLDQFGKTK 403
>BE440561
Length = 346
Score = 107 bits (266), Expect = 5e-24
Identities = 48/74 (64%), Positives = 59/74 (78%)
Frame = +1
Query: 43 SASSSSTATTSPPSTTSTTTPSRYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFL 102
++ ++ A +P S S PSRYE+ KRRDWNTF QYLRNH+PPL+L+RCSGAHV+EFL
Sbjct: 124 ASGAAPAALAAPQSEGSPAAPSRYESHKRRDWNTFLQYLRNHKPPLTLARCSGAHVIEFL 303
Query: 103 RYLDQFGKTKVHTL 116
+YL QFGKTKVH L
Sbjct: 304 KYLYQFGKTKVHIL 345
>AI736368 homologue to GP|6691165|gb|A 177 protein {Arabidopsis thaliana},
partial (33%)
Length = 397
Score = 97.1 bits (240), Expect = 5e-21
Identities = 43/65 (66%), Positives = 49/65 (75%)
Frame = +2
Query: 75 NTFGQYLRNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTLICPFYGHPNPPASCPCPL 134
NTFGQYL+N RPP+ LS+C+ VL+FLRYLDQFGKTKVH C FYG P PPA C CPL
Sbjct: 2 NTFGQYLKNQRPPVPLSQCNCNQVLDFLRYLDQFGKTKVHLQGCMFYGQPEPPAPCTCPL 181
Query: 135 RQAWG 139
+ G
Sbjct: 182 SRPGG 196
>TC211999 similar to UP|Q9FGH2 (Q9FGH2) Gb|AAC63835.1 (At5g58500), partial
(23%)
Length = 500
Score = 82.0 bits (201), Expect = 2e-16
Identities = 38/72 (52%), Positives = 52/72 (71%)
Frame = +3
Query: 28 PSSSMTMTIPSSSTTSASSSSTATTSPPSTTSTTTPSRYENQKRRDWNTFGQYLRNHRPP 87
P + T P+S +++ + S+ A P +S PSRYE+QKRRDWNTF QYL+NH+PP
Sbjct: 291 PQPTSTEAAPASGSSAPAISAAAPQ--PGGSSPAPPSRYESQKRRDWNTFLQYLQNHKPP 464
Query: 88 LSLSRCSGAHVL 99
L+L+RCSGAHV+
Sbjct: 465 LTLARCSGAHVI 500
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.313 0.128 0.384
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,417,313
Number of Sequences: 63676
Number of extensions: 271029
Number of successful extensions: 13769
Number of sequences better than 10.0: 1052
Number of HSP's better than 10.0 without gapping: 6646
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11360
length of query: 213
length of database: 12,639,632
effective HSP length: 93
effective length of query: 120
effective length of database: 6,717,764
effective search space: 806131680
effective search space used: 806131680
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 57 (26.6 bits)
Medicago: description of AC142096.4