BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC141923.5 - phase: 0 /pseudo
(648 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC231517 similar to UP|O82411 (O82411) FUSCA3, partial (43%) 85 1e-16
CN472223 85 1e-16
TC208388 similar to UP|Q8LNZ8 (Q8LNZ8) Abscisic acid insensitive... 76 4e-14
TC233402 similar to UP|Q8H349 (Q8H349) VP1/ABI3 family regulator... 75 1e-13
BF070672 75 1e-13
AW781777 70 3e-12
TC218282 similar to UP|RAV1_ARATH (Q9ZWM9) DNA-binding protein R... 65 7e-11
TC210230 similar to UP|P82280 (P82280) RAV2 protein, partial (32%) 63 5e-10
TC233176 weakly similar to GB|AAL07033.1|15810291|AY056184 auxin... 42 7e-04
BE661851 similar to GP|3582518|gb|A FUSCA3 {Arabidopsis thaliana... 40 0.003
AW760132 homologue to PIR|B86141|B861 protein T25K16.3 [imported... 35 0.080
AI443940 homologue to GP|19352043|db auxin response factor 6b {O... 33 0.30
TC232631 similar to UP|Q8H272 (Q8H272) Metacaspase 1 (Fragment),... 31 2.0
TC204443 homologue to UP|Q8SBC6 (Q8SBC6) Transcription factor LI... 31 2.0
TC204442 similar to UP|Q8SBC6 (Q8SBC6) Transcription factor LIM,... 31 2.0
TC222323 similar to UP|Q9FJ10 (Q9FJ10) Gb|AAF63824.1, partial (39%) 30 3.4
TC220540 weakly similar to GB|AAF79754.1|8778746|AC009317 T30E16... 30 3.4
TC227915 weakly similar to UP|GPX3_ARATH (Q9LYB4) Probable gluta... 30 4.4
BF066900 weakly similar to GP|29028974|gb| At4g29000 {Arabidopsi... 29 5.7
TC207176 29 7.5
>TC231517 similar to UP|O82411 (O82411) FUSCA3, partial (43%)
Length = 967
Score = 84.7 bits (208), Expect = 1e-16
Identities = 40/85 (47%), Positives = 55/85 (64%), Gaps = 1/85 (1%)
Frame = +3
Query: 321 LFEKVLSPSDAGRIGRLVLPKACAEAFLPRILQSEGVPLQFQDIMG-NEWTFQFRFWPNN 379
LF+K L SD + R++LPK AEAFLP + EG+ + DI G + W+F++RFWPNN
Sbjct: 66 LFQKELKNSDVSSLRRMILPKKAAEAFLPALESKEGIVISMDDIDGLHVWSFKYRFWPNN 245
Query: 380 NSRMYVLEGVTPCIQSLQLNAGDTV 404
NSRMYVLE + + L GD++
Sbjct: 246 NSRMYVLENTGDFVNTHGLRFGDSI 320
>CN472223
Length = 430
Score = 84.7 bits (208), Expect = 1e-16
Identities = 40/85 (47%), Positives = 55/85 (64%), Gaps = 1/85 (1%)
Frame = +2
Query: 321 LFEKVLSPSDAGRIGRLVLPKACAEAFLPRILQSEGVPLQFQDIMG-NEWTFQFRFWPNN 379
LF+K L SD + R++LPK AEAFLP + EG+ + DI G + W+F++RFWPNN
Sbjct: 170 LFQKELKNSDVSSLRRMILPKKAAEAFLPALESKEGIVISMDDIDGLHVWSFKYRFWPNN 349
Query: 380 NSRMYVLEGVTPCIQSLQLNAGDTV 404
NSRMYVLE + + L GD++
Sbjct: 350 NSRMYVLENTGDFVNTHGLRFGDSI 424
>TC208388 similar to UP|Q8LNZ8 (Q8LNZ8) Abscisic acid insensitive 3-like
factor, partial (42%)
Length = 1236
Score = 76.3 bits (186), Expect = 4e-14
Identities = 39/102 (38%), Positives = 59/102 (57%), Gaps = 2/102 (1%)
Frame = +3
Query: 321 LFEKVLSPSDAGRIGRLVLPKACAEAFLPRILQSEGVPLQFQDI-MGNEWTFQFRFWPNN 379
L +KVL SD G +GR+VLPK AE LP + +G+ + +DI W ++R+WPNN
Sbjct: 567 LLQKVLKQSDVGSLGRIVLPKKEAETHLPELEARDGISITMEDIGTSRVWNMRYRYWPNN 746
Query: 380 NSRMYVLEGVTPCIQSLQLNAGD-TVTFSRIDPGEKFLFGFR 420
SRMY+LE +++ L GD V +S + G+ + G +
Sbjct: 747 KSRMYLLENTGDFVRANGLQEGDFIVIYSDVKCGKYMIRGVK 872
>TC233402 similar to UP|Q8H349 (Q8H349) VP1/ABI3 family regulatory
protein-like protein, partial (5%)
Length = 354
Score = 74.7 bits (182), Expect = 1e-13
Identities = 35/67 (52%), Positives = 48/67 (71%)
Frame = +1
Query: 512 VSEKKRSRNIGTKTKRLHIHSEDAMELRLTWEEAQEFLCPPPSVEPNFVTIEDQVFEEYD 571
+S K++S + +K+KRL I +ED +EL++TW+EAQ L PPPS P+ V IE FEEY+
Sbjct: 136 ISRKRKSNILSSKSKRLIIENEDLIELKITWQEAQGLLRPPPSHIPSIVVIEGFEFEEYE 315
Query: 572 EPPVFGK 578
E PV GK
Sbjct: 316 EAPVLGK 336
>BF070672
Length = 409
Score = 74.7 bits (182), Expect = 1e-13
Identities = 34/53 (64%), Positives = 41/53 (77%)
Frame = +1
Query: 283 RPPADVKGKNQLLSRYWPRITDQELEKLSGDLKSTVVPLFEKVLSPSDAGRIG 335
RP AD +G+NQLL RYWPR TD EL+++S D S + PLF+K LS SDAGRIG
Sbjct: 250 RPRADARGRNQLLPRYWPRCTDLELQQISIDSNSVITPLFQKTLSASDAGRIG 408
>AW781777
Length = 349
Score = 70.1 bits (170), Expect = 3e-12
Identities = 39/95 (41%), Positives = 59/95 (62%), Gaps = 6/95 (6%)
Frame = +3
Query: 320 PLFEKVLSPSDAGRIGRLVLPKACAEAFLPRILQS-----EGVPLQFQDIMGNEWTFQFR 374
P+FEK L+PSD G++ RLV+PK AE + P S +G+ L F+D G W F++
Sbjct: 51 PMFEKPLTPSDVGKLNRLVIPKQHAEKYFPLSGDSGGSECKGLLLSFEDESGKCWRFRYS 230
Query: 375 FWPNNNSRMYVL-EGVTPCIQSLQLNAGDTVTFSR 408
+W N+S+ YVL +G + ++ +L+AGD V F R
Sbjct: 231 YW--NSSQSYVLTKGWSRYVKDKRLDAGDVVLFER 329
>TC218282 similar to UP|RAV1_ARATH (Q9ZWM9) DNA-binding protein RAV1, partial
(61%)
Length = 1517
Score = 65.5 bits (158), Expect = 7e-11
Identities = 43/117 (36%), Positives = 62/117 (52%), Gaps = 20/117 (17%)
Frame = +2
Query: 321 LFEKVLSPSDAGRIGRLVLPKACAEAFLPRILQS-------------------EGVPLQF 361
LFEK ++PSD G++ RLV+PK AE P LQS +GV L F
Sbjct: 746 LFEKAVTPSDVGKLNRLVIPKQHAEKHFP--LQSSNGVSATTIAAVTATPTAAKGVLLNF 919
Query: 362 QDIMGNEWTFQFRFWPNNNSRMYVL-EGVTPCIQSLQLNAGDTVTFSRIDPGEKFLF 417
+D+ G W F++ +W N+S+ YVL +G + ++ L AGDT F R +K L+
Sbjct: 920 EDVGGKVWRFRYSYW--NSSQSYVLTKGWSRFVKEKNLKAGDTDCFHRSTGPDKQLY 1084
>TC210230 similar to UP|P82280 (P82280) RAV2 protein, partial (32%)
Length = 769
Score = 62.8 bits (151), Expect = 5e-10
Identities = 37/111 (33%), Positives = 60/111 (53%), Gaps = 14/111 (12%)
Frame = +3
Query: 321 LFEKVLSPSDAGRIGRLVLPKACAEAFLP-------------RILQSEGVPLQFQDIMGN 367
LFEK ++PSD G++ RLV+PK AE P ++G+ L F+D+ G
Sbjct: 66 LFEKTVTPSDVGKLNRLVIPKQHAEKHFPLSGSGDESSPCVAGASAAKGMLLNFEDVGGK 245
Query: 368 EWTFQFRFWPNNNSRMYVL-EGVTPCIQSLQLNAGDTVTFSRIDPGEKFLF 417
W F++ +W N+S+ YVL +G + ++ L AGD V F + ++ L+
Sbjct: 246 VWRFRYSYW--NSSQSYVLTKGWSRFVKEKNLRAGDAVQFFKSTGPDRQLY 392
>TC233176 weakly similar to GB|AAL07033.1|15810291|AY056184 auxin response
factor ARF17 {Arabidopsis thaliana;} , partial (17%)
Length = 958
Score = 42.4 bits (98), Expect = 7e-04
Identities = 29/97 (29%), Positives = 46/97 (46%), Gaps = 3/97 (3%)
Frame = +2
Query: 313 DLKSTVVPLFEKVLSPSDAGRIGRLVLPKACAEAFLPRILQSEGVP---LQFQDIMGNEW 369
D ++ V F K+L+PSDA +P+ CA++ P + +P L DI G EW
Sbjct: 191 DRENNNVISFAKILTPSDANNGDDFSVPRFCADSCFPPLDFRTDLPV*LLSVADIHGVEW 370
Query: 370 TFQFRFWPNNNSRMYVLEGVTPCIQSLQLNAGDTVTF 406
F+ + + + G + + +L AGDTV F
Sbjct: 371 RFRHIYHGTPRHHFFTI-GWSKFVNHKKLVAGDTVIF 478
>BE661851 similar to GP|3582518|gb|A FUSCA3 {Arabidopsis thaliana}, partial
(20%)
Length = 632
Score = 40.0 bits (92), Expect = 0.003
Identities = 23/67 (34%), Positives = 33/67 (48%)
Frame = +1
Query: 321 LFEKVLSPSDAGRIGRLVLPKACAEAFLPRILQSEGVPLQFQDIMGNEWTFQFRFWPNNN 380
LF+K L SD + R++LPK AEAFL + E + + DI G + + NN
Sbjct: 370 LFQKELKNSDVSSLRRMILPKKAAEAFLSALESQEXIXISMDDIDGFMYGGSXTGFGYNN 549
Query: 381 SRMYVLE 387
S L+
Sbjct: 550 SXXMXLK 570
>AW760132 homologue to PIR|B86141|B861 protein T25K16.3 [imported] -
Arabidopsis thaliana, partial (10%)
Length = 391
Score = 35.4 bits (80), Expect = 0.080
Identities = 14/25 (56%), Positives = 21/25 (84%)
Frame = +1
Query: 321 LFEKVLSPSDAGRIGRLVLPKACAE 345
+F+KV++PSD G++ RLV+PK AE
Sbjct: 313 MFDKVVTPSDVGKLNRLVIPKQHAE 387
>AI443940 homologue to GP|19352043|db auxin response factor 6b {Oryza
sativa}, partial (14%)
Length = 391
Score = 33.5 bits (75), Expect = 0.30
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Frame = +3
Query: 322 FEKVLSPSDAGRIGRLVLPKACAEAFLPRILQSEGVPLQ---FQDIMGNEWTFQFRF 375
F K L+ SD G +P+ AE P + S+ P Q +D+ GNEW F+ F
Sbjct: 210 FCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHGNEWKFRHIF 380
>TC232631 similar to UP|Q8H272 (Q8H272) Metacaspase 1 (Fragment), partial
(43%)
Length = 850
Score = 30.8 bits (68), Expect = 2.0
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = -3
Query: 68 HSGCIVSKSSFEYLDFGGITCVTCVKPSQLCLNTENHN 105
HS ++KSS + G +TC TC+ S +CL T + N
Sbjct: 515 HSLYCIAKSS---ISTGRVTCWTCISRSLVCLTTTHQN 411
>TC204443 homologue to UP|Q8SBC6 (Q8SBC6) Transcription factor LIM, partial
(91%)
Length = 1080
Score = 30.8 bits (68), Expect = 2.0
Identities = 19/67 (28%), Positives = 31/67 (45%)
Frame = +3
Query: 12 KEGSTGEWKKGWSLISGGFAKLCNKCGLAYENSLFCDKFHRHETGWRKCSNCSKPIHSGC 71
K TGE K + +S F +KC + +K + T + K +C K H GC
Sbjct: 399 KPEKTGEEKPAATKVSSMFGGTRDKCAGCQKTVYPTEKVTVNGTPYHK--SCFKCTHGGC 572
Query: 72 IVSKSSF 78
++S S++
Sbjct: 573 VISPSNY 593
>TC204442 similar to UP|Q8SBC6 (Q8SBC6) Transcription factor LIM, partial
(91%)
Length = 994
Score = 30.8 bits (68), Expect = 2.0
Identities = 19/67 (28%), Positives = 31/67 (45%)
Frame = +1
Query: 12 KEGSTGEWKKGWSLISGGFAKLCNKCGLAYENSLFCDKFHRHETGWRKCSNCSKPIHSGC 71
K TGE K + +S F +KC + +K + T + K +C K H GC
Sbjct: 370 KPEKTGEEKPAATKVSSMFGGTRDKCAGCQKTVYPTEKVTVNGTPYHK--SCFKCTHGGC 543
Query: 72 IVSKSSF 78
++S S++
Sbjct: 544 VISPSNY 564
>TC222323 similar to UP|Q9FJ10 (Q9FJ10) Gb|AAF63824.1, partial (39%)
Length = 368
Score = 30.0 bits (66), Expect = 3.4
Identities = 16/48 (33%), Positives = 20/48 (41%)
Frame = +2
Query: 11 CKEGSTGEWKKGWSLISGGFAKLCNKCGLAYENSLFCDKFHRHETGWR 58
CK T W+ G G LCN CG+ Y C + R E W+
Sbjct: 197 CKTTKTPLWRGG----PAGPKTLCNACGIRYRKRRACSR-KREEQRWK 325
>TC220540 weakly similar to GB|AAF79754.1|8778746|AC009317 T30E16.18
{Arabidopsis thaliana;} , partial (6%)
Length = 951
Score = 30.0 bits (66), Expect = 3.4
Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Frame = -2
Query: 450 APQNLNSLSSFSNLLQSMKGNGEPYLNGHSEHL-RLGNGTADWLKTANSEEEMNNGPLQR 508
+P+ LN SF++L +S G+G+ ++ L RLG+ A W +SE NN
Sbjct: 551 SPEPLNF--SFTSLEESWCGSGKIFIGPSMCSL*RLGHPNATWTIDISSELTKNNDSRWL 378
Query: 509 LVSVSEKKRSRNIGT 523
V++ K S N+G+
Sbjct: 377 NVTLGYLKISPNLGS 333
>TC227915 weakly similar to UP|GPX3_ARATH (Q9LYB4) Probable glutathione
peroxidase At3g63080 , partial (95%)
Length = 885
Score = 29.6 bits (65), Expect = 4.4
Identities = 18/63 (28%), Positives = 26/63 (40%)
Frame = +1
Query: 541 TWEEAQEFLCPPPSVEPNFVTIEDQVFEEYDEPPVFGKIKTNASPSGPISNVWDADRSTL 600
T +EAQEF C E P+FGKI+ N S + P+ +S +
Sbjct: 349 TSQEAQEFACTRYKAEY----------------PIFGKIRVNGSDTAPVFKFLKTQKSGV 480
Query: 601 FGA 603
G+
Sbjct: 481 MGS 489
>BF066900 weakly similar to GP|29028974|gb| At4g29000 {Arabidopsis thaliana},
partial (6%)
Length = 460
Score = 29.3 bits (64), Expect = 5.7
Identities = 21/72 (29%), Positives = 29/72 (40%)
Frame = +2
Query: 284 PPADVKGKNQLLSRYWPRITDQELEKLSGDLKSTVVPLFEKVLSPSDAGRIGRLVLPKAC 343
PP K + Q L +WP D + KL + P LSP R+G L C
Sbjct: 113 PPVSKKIQGQELF-FWPTTKDPSISKL*QQVNHVKGPAPSSSLSPVSGARVGTATL---C 280
Query: 344 AEAFLPRILQSE 355
F+ R L ++
Sbjct: 281 PSKFMYRSLLAD 316
>TC207176
Length = 1616
Score = 28.9 bits (63), Expect = 7.5
Identities = 30/121 (24%), Positives = 50/121 (40%), Gaps = 1/121 (0%)
Frame = -3
Query: 439 GILIKDTNFSGAPQNLNSLSSFSNLLQSMKGNGEPYLNGHSEHLRLGNGTADWLKTANSE 498
G L K + F G Q S S F L Q + + + + S+ L+ NG+ WL+T +
Sbjct: 1290 GGL*KPSTFLGK*Q---SPSRFHPLPQPTRNSHDVPMLESSQQLKSSNGSKQWLQTFSQ- 1123
Query: 499 EEMNNGPLQRLVSVSEKKRSRNIGTKTK-RLHIHSEDAMELRLTWEEAQEFLCPPPSVEP 557
PLQ + S +S+ + K + + + L + PPPS+ P
Sbjct: 1122 ------PLQSTLQASNSSQSKTLHQKNN*KKKKTMK*VLFLLFHRQAIPTGSAPPPSLSP 961
Query: 558 N 558
+
Sbjct: 960 S 958
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.317 0.133 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,751,988
Number of Sequences: 63676
Number of extensions: 506565
Number of successful extensions: 2398
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 2380
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2392
length of query: 648
length of database: 12,639,632
effective HSP length: 103
effective length of query: 545
effective length of database: 6,081,004
effective search space: 3314147180
effective search space used: 3314147180
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)
Medicago: description of AC141923.5