TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC141923.1 + phase: 0 /pseudo
         (83 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BI941783                                                               27  1.4
TC208191 similar to GB|AAP21345.1|30102854|BT006537 At5g55640 {A...    27  2.4
AW309300 similar to GP|1200116|emb| c subunit of V-type ATPase {...    27  2.4
BM528807                                                               26  3.1
TC210694                                                               26  4.1
TC233297                                                               25  5.3
TC220631 weakly similar to UP|O80638 (O80638) Nodulin-like prote...    25  5.3
BU084357                                                               25  6.9
CO984678                                                               25  9.1

>BI941783 
          Length = 174

 Score = 27.3 bits (59), Expect = 1.4
 Identities = 9/22 (40%), Positives = 16/22 (71%)
 Frame = +1

Query: 15 WHTIWFIAAAFLLISCVGTSCI 36
          WH++  I +AF+ I+C+ T C+
Sbjct: 31 WHSVCDILSAFVQINCLRTCCL 96


>TC208191 similar to GB|AAP21345.1|30102854|BT006537 At5g55640 {Arabidopsis
           thaliana;} , partial (62%)
          Length = 1006

 Score = 26.6 bits (57), Expect = 2.4
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +2

Query: 14  QWHTIWFIAAAFLLISCVGTSC 35
           +WH  +F+A  F  ISC+G  C
Sbjct: 650 KWHWRFFLAILFFKISCLG*LC 715


>AW309300 similar to GP|1200116|emb| c subunit of V-type ATPase {Nicotiana
           tabacum}, partial (43%)
          Length = 244

 Score = 26.6 bits (57), Expect = 2.4
 Identities = 7/32 (21%), Positives = 15/32 (46%)
 Frame = -3

Query: 15  WHTIWFIAAAFLLISCVGTSCIKESEKHIYVR 46
           WH  W+  +   +  C   +C+  ++ H + R
Sbjct: 167 WHVYWYCRSCSCMSQCTAATCLCRNDCHPHFR 72


>BM528807 
          Length = 428

 Score = 26.2 bits (56), Expect = 3.1
 Identities = 10/24 (41%), Positives = 12/24 (49%)
 Frame = +3

Query: 11  KEQQWHTIWFIAAAFLLISCVGTS 34
           +   WH IW    A L  SC+G S
Sbjct: 210 RRSSWHLIWL*RRAVLAKSCLGAS 281


>TC210694 
          Length = 778

 Score = 25.8 bits (55), Expect = 4.1
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +3

Query: 14  QWHTIWFIAAAFLLISCVGTSCIKESEKHIY 44
           QW  I +    FL+  C+GT  I E E  ++
Sbjct: 213 QWLQIHYPPPPFLIFCCIGTMEILEPEASVF 305


>TC233297 
          Length = 662

 Score = 25.4 bits (54), Expect = 5.3
 Identities = 8/40 (20%), Positives = 23/40 (57%)
 Frame = -2

Query: 6   EGGNFKEQQWHTIWFIAAAFLLISCVGTSCIKESEKHIYV 45
           +G + +E QW T+    +A  +++ +G+ C++    ++ +
Sbjct: 256 QGKDIQENQWLTVQHAISAPAMLNFLGSDCLRYLHSNVKI 137


>TC220631 weakly similar to UP|O80638 (O80638) Nodulin-like protein
           (At2g39510), partial (31%)
          Length = 797

 Score = 25.4 bits (54), Expect = 5.3
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = +1

Query: 19  WFIAAAFLLISCVGTS 34
           W I A FLLI C G S
Sbjct: 106 WLIGACFLLIGCAGFS 153


>BU084357 
          Length = 431

 Score = 25.0 bits (53), Expect = 6.9
 Identities = 14/43 (32%), Positives = 22/43 (50%)
 Frame = +1

Query: 1   MVAALEGGNFKEQQWHTIWFIAAAFLLISCVGTSCIKESEKHI 43
           MV   + G FK +Q H    +A  F   S V  +C+ ++ KH+
Sbjct: 172 MVTRSKNGIFKPKQVH----LATKFPFPSLVEPTCVTQAMKHL 288


>CO984678 
          Length = 774

 Score = 24.6 bits (52), Expect = 9.1
 Identities = 10/23 (43%), Positives = 15/23 (64%), Gaps = 1/23 (4%)
 Frame = -1

Query: 15  WHTIWFIAA-AFLLISCVGTSCI 36
           W T+ F+A   F +I C+G +CI
Sbjct: 696 WLTVVFLAFDVFFIIFCIGMACI 628


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.368    0.161    0.647 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,183,595
Number of Sequences: 63676
Number of extensions: 54287
Number of successful extensions: 1008
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1007
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1008
length of query: 83
length of database: 12,639,632
effective HSP length: 59
effective length of query: 24
effective length of database: 8,882,748
effective search space: 213185952
effective search space used: 213185952
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 14 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 36 (21.7 bits)
S2: 52 (24.6 bits)