BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC141863.3 - phase: 0
(773 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
NP005379 ORF (334 AA) 125 5e-29
CF922321 119 4e-27
TC233500 similar to UP|Q6I8M7 (Q6I8M7) Soybean Tgm5 transposable... 104 2e-22
CF922798 97 2e-20
BF424817 46 5e-05
BE440417 40 0.004
TC234090 38 0.015
TC232838 similar to GB|AAP21377.1|30102918|BT006569 At1g47970 {A... 33 0.62
TC207416 similar to UP|O49349 (O49349) Transcription factor IIA ... 32 0.81
TC219184 32 1.1
BU926431 32 1.4
TC206168 similar to UP|Q93VP4 (Q93VP4) At1g07470/F22G5_13 (TFIIA... 31 1.8
AW277529 31 2.4
TC206556 weakly similar to UP|O60264 (O60264) HSNF2H (SWI/SNF-re... 31 2.4
TC230133 weakly similar to UP|Q6VBJ3 (Q6VBJ3) Epa4p, partial (6%) 31 2.4
TC213554 weakly similar to UP|Q8LLE6 (Q8LLE6) RNA-binding protei... 31 2.4
TC219461 homologue to UP|Q9AR19 (Q9AR19) Histone acetyltransfera... 30 5.3
TC207664 weakly similar to UP|O60264 (O60264) HSNF2H (SWI/SNF-re... 30 5.3
TC230368 29 6.9
TC230134 weakly similar to UP|NUCL_HUMAN (P19338) Nucleolin (Pro... 29 9.0
>NP005379 ORF (334 AA)
Length = 1002
Score = 125 bits (315), Expect = 5e-29
Identities = 66/144 (45%), Positives = 90/144 (61%), Gaps = 1/144 (0%)
Frame = +1
Query: 1 MCMTKPYLFLSCIVPGPDNPKAGIDVFLQPLIDDLKRLW-VGELTYDISRKQNFKLRAAL 59
+CM + Y+ LS ++ GP P IDV+L PLI+DL++LW G L +D RK+ F++RA L
Sbjct: 577 LCMKRKYMMLSMMISGPRQPGNDIDVYLSPLIEDLRKLWDEGVLVFDGFRKETFQMRAML 756
Query: 60 MWTINDFPAYGMLSGWSTHGRFACPHCMENTKAFTLESGGKSSWFDCHRPFLPHNHPFRR 119
TINDFPAYG LSG+S G ACP C E+T L+ G K+ + HR FL +HP+RR
Sbjct: 757 FCTINDFPAYGNLSGYSVKGHLACPICEEDTSYIQLKHGRKTV-YTRHRVFLKAHHPYRR 933
Query: 120 LKNGFKKDERVFVGPPPKITSEEV 143
LK F + + P +T E+V
Sbjct: 934 LKKAFNGSQEHEIRRTP-LTGEQV 1002
>CF922321
Length = 742
Score = 119 bits (299), Expect = 4e-27
Identities = 65/148 (43%), Positives = 89/148 (59%), Gaps = 1/148 (0%)
Frame = -1
Query: 1 MCMTKPYLFLSCIVPGPDNPKAGIDVFLQPLIDDLKRLW-VGELTYDISRKQNFKLRAAL 59
+CM + Y+ LS ++ P P IDV+L LI+DL +LW G L ++ + F +RA L
Sbjct: 469 LCMKRKYMMLSMMISNPRQPGNDIDVYLSSLIEDLTKLWDEGFLAFNGFWNETFPMRAML 290
Query: 60 MWTINDFPAYGMLSGWSTHGRFACPHCMENTKAFTLESGGKSSWFDCHRPFLPHNHPFRR 119
TINDFPAYG LSG++ G +CP C ENT L+ G K+ + HR FL NHP+RR
Sbjct: 289 FCTINDFPAYGNLSGYNVKGHHSCPICEENTSYIQLKHGRKTV-YSRHRRFLTPNHPYRR 113
Query: 120 LKNGFKKDERVFVGPPPKITSEEVWTRV 147
LK F + + P P +T+EEV+ RV
Sbjct: 112 LKKAFNGSQGHDIVPIP-LTAEEVYQRV 32
>TC233500 similar to UP|Q6I8M7 (Q6I8M7) Soybean Tgm5 transposable element
(Fragment), partial (65%)
Length = 1033
Score = 104 bits (259), Expect = 2e-22
Identities = 55/127 (43%), Positives = 77/127 (60%), Gaps = 1/127 (0%)
Frame = +2
Query: 1 MCMTKPYLFLSCIVPGPDNPKAGIDVFLQPLIDDLKRLW-VGELTYDISRKQNFKLRAAL 59
+CM + Y+ LS ++ GP P I+V+L PLI+DL +L G L +D R + F L A L
Sbjct: 230 LCMKRKYMMLSMMITGPRQPGNDINVYLNPLIEDLTKL*DEGVLVFDGFRNETFNLCAML 409
Query: 60 MWTINDFPAYGMLSGWSTHGRFACPHCMENTKAFTLESGGKSSWFDCHRPFLPHNHPFRR 119
TINDFP Y LSG+S G ACP C E+T ++ + G+ + + HR FL +HP+RR
Sbjct: 410 FCTINDFPTYENLSGYSVKGHRACPICEEDT-SYIQQKHGRKTVYTRHRRFLKPHHPYRR 586
Query: 120 LKNGFKK 126
LK F +
Sbjct: 587 LKKAFNE 607
>CF922798
Length = 617
Score = 97.4 bits (241), Expect = 2e-20
Identities = 56/125 (44%), Positives = 73/125 (57%), Gaps = 1/125 (0%)
Frame = -2
Query: 1 MCMTKPYLFLSCIVPGPDNPKAGIDVFLQPLIDDLKRLWVGE-LTYDISRKQNFKLRAAL 59
+CM K Y+ LS ++ P P IDV+L PLI+DL L E L +D + + F L A L
Sbjct: 469 LCMNKKYMMLSMMILSPRQPGNDIDVYLSPLIEDLTML*DEEVLVFDGFQNETFHLCAML 290
Query: 60 MWTINDFPAYGMLSGWSTHGRFACPHCMENTKAFTLESGGKSSWFDCHRPFLPHNHPFRR 119
TINDFPAYG LSG+S ACP C E+T L+ G K+ + H+ FL +H +RR
Sbjct: 289 FCTINDFPAYGNLSGYSVKSHRACPICEEDTSYIQLKHGRKTI-YTRHQRFLKPHHLYRR 113
Query: 120 LKNGF 124
LK F
Sbjct: 112 LKKEF 98
>BF424817
Length = 413
Score = 46.2 bits (108), Expect = 5e-05
Identities = 48/166 (28%), Positives = 69/166 (40%), Gaps = 7/166 (4%)
Frame = +2
Query: 593 FYGVIKHIYELSYNDNKVVLFYCDWFDPSPRWTKINKLCNTVDI---RVDKKYKEY--DP 647
++G I I+EL+Y V +F C+W D N +T DI VD K Y DP
Sbjct: 35 YFGFIDEIWELNYVKFTVCVFKCEWVDS-------NTGVHTDDIGFMLVDLKKLGYHNDP 193
Query: 648 FIMAHNVRQVYYVPYPPTLPRKRGWSVAIKTKPRGRIETEERNEEVAYQADDMTHVNEII 707
FIMA RQV+YV P W V ++ K G I
Sbjct: 194 FIMAEQARQVFYVQD----PCDERWCVVLQGKTIG------------------------I 289
Query: 708 EVDQVTSWQDSQVE--GDQVDPSILEMRNEVEDENEDVVDDNNEGD 751
V+ S+ D+ V Q+ P+++ E+E +DV + N+ D
Sbjct: 290 NVEDDDSYMDTYVSPLTAQITPNVVG-----EEEADDVHANRNDHD 412
>BE440417
Length = 192
Score = 40.0 bits (92), Expect = 0.004
Identities = 20/44 (45%), Positives = 25/44 (56%)
Frame = +2
Query: 100 KSSWFDCHRPFLPHNHPFRRLKNGFKKDERVFVGPPPKITSEEV 143
K +FD H FLP NH +RR K FKK PPP ++S +V
Sbjct: 35 KICYFDFHHQFLPLNHAYRRNKKSFKKGWVETSPPPPCLSSLDV 166
>TC234090
Length = 420
Score = 38.1 bits (87), Expect = 0.015
Identities = 35/112 (31%), Positives = 56/112 (49%), Gaps = 5/112 (4%)
Frame = -1
Query: 104 FDCHRPFLPHNHPFRRLKNGFKKDERVFVGPPPKITSEEVWTRVCDYPKVTDYGRAVP-- 161
F CH FLP + R KN KK + + ++ EE+W R + YG V
Sbjct: 390 FYCHYHFLPR*CSWERKKN--KKLRDIVLRSLSPLSGEEIWPRFSQLSFI--YGNFVRSY 223
Query: 162 IPRYGVDHHWTKRSIFWDLPYWK-DNLLRHNLDVMHIEKNVFDN--IFNTVM 210
+ V+ +RS+F +L + + NLL N++VMHI++ VF+ +F +M
Sbjct: 222 LGIRMVETIIGQRSVF*NLLH*RMHNLLHDNINVMHIKRIVFNI*WVFRAIM 67
>TC232838 similar to GB|AAP21377.1|30102918|BT006569 At1g47970 {Arabidopsis
thaliana;} , partial (46%)
Length = 902
Score = 32.7 bits (73), Expect = 0.62
Identities = 19/49 (38%), Positives = 31/49 (62%), Gaps = 5/49 (10%)
Frame = +2
Query: 721 EGDQVDPSILEMRNEVED-ENEDVVDDNNEGDHQDNQVDD----GDVDE 764
E D+ S+ E+ ++ ED E+E+ DD++EGD D++ DD GD D+
Sbjct: 284 EDDEEYESVDEVVDDAEDDEDEEEDDDDDEGDDNDDEEDDAPDGGDDDD 430
>TC207416 similar to UP|O49349 (O49349) Transcription factor IIA large subunit
(TFIIA-L1), partial (62%)
Length = 1724
Score = 32.3 bits (72), Expect = 0.81
Identities = 22/87 (25%), Positives = 39/87 (44%), Gaps = 6/87 (6%)
Frame = +3
Query: 693 VAYQADDMTHVNEIIEVDQVTSWQDSQVEGDQVDPSI------LEMRNEVEDENEDVVDD 746
+ Y DD+ I +V S +D + P + L ++NEV ++ DD
Sbjct: 1002 IPYDDDDVLSTPNIYNYGEVFS-EDYNISNTPAPPEVPASTPALLVQNEVGND----FDD 1166
Query: 747 NNEGDHQDNQVDDGDVDEYNYASDNNT 773
+++ + N+ DD D+D+ D NT
Sbjct: 1167 DDDDEPPLNEEDDDDLDDMEQGEDQNT 1247
>TC219184
Length = 951
Score = 32.0 bits (71), Expect = 1.1
Identities = 24/66 (36%), Positives = 33/66 (49%), Gaps = 6/66 (9%)
Frame = -3
Query: 550 CANEFHTYFVNGYKFH---THSWTEGKKTINSGVYVKGVTDGGED--DFYGVIK-HIYEL 603
C N FH YF N F + S+++GK + G + VT+GG F+ +I IY L
Sbjct: 385 CVNLFHHYFSNLNHFQFA*SASFSKGKALVGRGSNL*VVTEGGSFCLYFFAIISASIYTL 206
Query: 604 SYNDNK 609
S D K
Sbjct: 205 SLFDRK 188
>BU926431
Length = 457
Score = 31.6 bits (70), Expect = 1.4
Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 1/82 (1%)
Frame = +3
Query: 685 ETEERNEEVAYQADDMTHVNEIIEVDQVTSWQDSQVEGDQVDPSILEMR-NEVEDENEDV 743
E E+ N E AY+ D H E E + V G + E + NEVED+
Sbjct: 75 EEEDDNVEDAYKHDHNEHEEEGNEHESEEKGDKRGVRGGGSEQEEDENKSNEVEDQRGGG 254
Query: 744 VDDNNEGDHQDNQVDDGDVDEY 765
D+ +E D + + VD +E+
Sbjct: 255 DDEIDENDQEQSAVDTDHDEEF 320
>TC206168 similar to UP|Q93VP4 (Q93VP4) At1g07470/F22G5_13 (TFIIA-L2)
(Transcription factor IIA large subunit), partial (19%)
Length = 797
Score = 31.2 bits (69), Expect = 1.8
Identities = 15/41 (36%), Positives = 24/41 (57%)
Frame = +1
Query: 733 RNEVEDENEDVVDDNNEGDHQDNQVDDGDVDEYNYASDNNT 773
+NEV++E++D + NE D DD D+D+ + D NT
Sbjct: 184 QNEVDEEDDDDEEPLNEND------DDDDLDDLDQGEDQNT 288
>AW277529
Length = 438
Score = 30.8 bits (68), Expect = 2.4
Identities = 13/37 (35%), Positives = 20/37 (53%)
Frame = +2
Query: 737 EDENEDVVDDNNEGDHQDNQVDDGDVDEYNYASDNNT 773
ED D+V N+GD N+V+D D +Y+ + T
Sbjct: 230 EDTEVDIVSLTNKGDFASNKVEDPDATDYSSSFSGTT 340
>TC206556 weakly similar to UP|O60264 (O60264) HSNF2H (SWI/SNF-related
matrix-associated actin-dependent regulator of chromatin
a5), partial (12%)
Length = 1129
Score = 30.8 bits (68), Expect = 2.4
Identities = 33/146 (22%), Positives = 57/146 (38%), Gaps = 8/146 (5%)
Frame = +1
Query: 509 EGSTVGSIHEYFPAWFKQRVYNAEPTDEVIRLRQLSQGPLQCANEFHTYFVNGYKFHTHS 568
EG T + Y FK+R D +I+ + + + +E + +
Sbjct: 109 EGKTEEEVERYAKV-FKERYKELNDYDRIIKNIERGEARISRKDEIMKAIGKKLDRYKNP 285
Query: 569 WTEGKKTINSGVYVKGVTDGGEDDFYGVIKHIYELSYND--------NKVVLFYCDWFDP 620
W E K KG E D + +I +++L Y + LF DWF
Sbjct: 286 WLELKIQYGQN---KGKLYNEECDRF-MICMVHKLGYGNWDELKAAFRTSPLFRFDWFVK 453
Query: 621 SPRWTKINKLCNTVDIRVDKKYKEYD 646
S ++ + C+T+ V+K+ +EYD
Sbjct: 454 SRTTQELARRCDTLIRLVEKENQEYD 531
>TC230133 weakly similar to UP|Q6VBJ3 (Q6VBJ3) Epa4p, partial (6%)
Length = 850
Score = 30.8 bits (68), Expect = 2.4
Identities = 26/88 (29%), Positives = 40/88 (44%), Gaps = 9/88 (10%)
Frame = +3
Query: 686 TEERNEEVA--YQADDMTHVNE-----IIEVDQVTSWQDSQVEGDQVDPSILEMRNEVED 738
T E N++ + DD +VN+ E D+ S D E D D +D
Sbjct: 252 TSEENKDASDTEDDDDDDNVNDGEDDNDDEEDEDFSGDDGGEEADSDDDPEANGGGGSDD 431
Query: 739 EN--EDVVDDNNEGDHQDNQVDDGDVDE 764
++ +D DDN+E D ++ D+GD DE
Sbjct: 432 DDGDDDEDDDNDEDDGDEDDEDEGDDDE 515
Score = 29.6 bits (65), Expect = 5.3
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = +3
Query: 718 SQVEGDQVDPSILEMRNEVEDENEDVVDDNNEGDHQDNQVDDGDVDEYN 766
S E D D ++ N+ ED+N+D D++ GD + D D E N
Sbjct: 276 SDTEDDDDDDNV----NDGEDDNDDEEDEDFSGDDGGEEADSDDDPEAN 410
>TC213554 weakly similar to UP|Q8LLE6 (Q8LLE6) RNA-binding protein AKIP1,
partial (18%)
Length = 451
Score = 30.8 bits (68), Expect = 2.4
Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Frame = +2
Query: 717 DSQVEGDQVDPSILEMRNEVEDENEDVVDDNNEGD---HQDNQVDDGD 761
+ +VE ++V+ + E E EDE ++ ++ ++ D HQ Q D+ D
Sbjct: 203 EEEVEEEEVEEEVEEEEEEEEDEEDEEEEEEDQKDQYQHQQQQQDEDD 346
>TC219461 homologue to UP|Q9AR19 (Q9AR19) Histone acetyltransferase GCN5
(At3g54610) (Expressed protein), partial (12%)
Length = 853
Score = 29.6 bits (65), Expect = 5.3
Identities = 18/77 (23%), Positives = 37/77 (47%)
Frame = +1
Query: 697 ADDMTHVNEIIEVDQVTSWQDSQVEGDQVDPSILEMRNEVEDENEDVVDDNNEGDHQDNQ 756
A H +++ D + S D D + L +++E + D +++ + +D
Sbjct: 193 ATSSIHKRKLVSEDHAPPFPPSSFSADTRDGA-LTSNDDLESISARGADSDSDSESEDAV 369
Query: 757 VDDGDVDEYNYASDNNT 773
VDD D D+Y+ +DN++
Sbjct: 370 VDD-DEDDYDNDNDNDS 417
>TC207664 weakly similar to UP|O60264 (O60264) HSNF2H (SWI/SNF-related
matrix-associated actin-dependent regulator of chromatin
a5), partial (7%)
Length = 810
Score = 29.6 bits (65), Expect = 5.3
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +1
Query: 612 LFYCDWFDPSPRWTKINKLCNTVDIRVDKKYKEYD 646
LF DWF S +I + C+T+ V+K+ +EYD
Sbjct: 271 LFRFDWFVKSRTTQEITRRCDTLIRLVEKENQEYD 375
>TC230368
Length = 895
Score = 29.3 bits (64), Expect = 6.9
Identities = 23/80 (28%), Positives = 36/80 (44%)
Frame = +1
Query: 663 PPTLPRKRGWSVAIKTKPRGRIETEERNEEVAYQADDMTHVNEIIEVDQVTSWQDSQVEG 722
PP R WS IK P +EE ++ + D+ H+ DQ+ Q+S
Sbjct: 406 PPIFVLCRDWSAGIKALP-----SEELSQAIRNFLSDL-HLQTEQHNDQLLKKQNS---- 555
Query: 723 DQVDPSILEMRNEVEDENED 742
V+ S+ E ++ +ENED
Sbjct: 556 --VNASMAETESKTNEENED 609
>TC230134 weakly similar to UP|NUCL_HUMAN (P19338) Nucleolin (Protein C23),
partial (8%)
Length = 581
Score = 28.9 bits (63), Expect = 9.0
Identities = 21/62 (33%), Positives = 29/62 (45%), Gaps = 5/62 (8%)
Frame = +2
Query: 708 EVDQVTSWQDSQVEGDQVDPSILEMRNEVEDENEDV--VDDNN---EGDHQDNQVDDGDV 762
E D+ S D E D D E +D++ED DD+N +GD D+ +D D
Sbjct: 338 EDDEDFSGDDGGEEADSDDDPEANGGGESDDDDEDDDDDDDDNDEDDGDEDDDDEEDEDE 517
Query: 763 DE 764
DE
Sbjct: 518 DE 523
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.320 0.138 0.438
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,358,376
Number of Sequences: 63676
Number of extensions: 629363
Number of successful extensions: 2915
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 2852
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2901
length of query: 773
length of database: 12,639,632
effective HSP length: 105
effective length of query: 668
effective length of database: 5,953,652
effective search space: 3977039536
effective search space used: 3977039536
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)
Medicago: description of AC141863.3