BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC141862.20 - phase: 0 /pseudo
(954 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC204438 homologue to UP|Q84VH6 (Q84VH6) Gag-pol polyprotein, co... 145 1e-34
TC204439 UP|Q84VI4 (Q84VI4) Gag-pol polyprotein, complete 127 3e-29
AI959950 80 6e-15
TC232995 74 3e-13
AI855818 weakly similar to GP|21741393|e OSJNBb0051N19.6 {Oryza ... 68 2e-11
TC211311 weakly similar to UP|O24587 (O24587) Pol protein, parti... 55 1e-09
BM143109 52 1e-06
BF596801 weakly similar to GP|29423270|g gag-pol polyprotein {Gl... 49 1e-05
TC213445 44 3e-04
AI855982 39 0.008
CO983516 34 0.27
AI966222 33 0.46
BI469652 weakly similar to GP|18149115|dbj| reverse transcriptas... 32 1.3
CO983154 32 1.7
CO981945 31 3.0
TC232593 weakly similar to UP|Q9XG91 (Q9XG91) Tpv2-1c protein (F... 30 5.1
>TC204438 homologue to UP|Q84VH6 (Q84VH6) Gag-pol polyprotein, complete
Length = 4734
Score = 145 bits (365), Expect = 1e-34
Identities = 142/467 (30%), Positives = 231/467 (49%)
Frame = +3
Query: 441 N*A*NC*RSSLR*WMDISYARRAKSVSEE*CVGSGTQTFSEEHYWNKMGIQKQAK*TRRG 500
N*A C R + * +D YARR ++ +E* +G+ + T W+++ +Q+Q +* R
Sbjct: 3198 N*AQECERGTD**VLDQCYARRIGAIQKE*SLGASS*TRGN*CDWHQVDLQEQNQ*RRCY 3377
Query: 501 NQKQSQTCCSRLQSTRRH*LH*NICSNCKIGSNQVTSILRN*SWHNIISNGCKKCFS*WC 560
NQKQ QTCCSRL S R L *N C +Q+ + + +GC++ S W
Sbjct: 3378 NQKQGQTCCSRLHSD*RCRL**NFRPCC*T*VHQIVTWCSLHPQIQAVPDGCEERVSEWI 3557
Query: 561 H*RRSVC*TTSWI*GS*AS*PCL*T*EITIWLETSSQSLV**TK*FLN*K*F*KRTS*HN 620
RS+C I S +S C+ E ++W+E SS+SLV* *+ +* +
Sbjct: 3558 PE*RSLCGAAKGICRSNSSRSCIQAQEGSLWIEASSKSLV*KANRVPYSARV*EGRN*QD 3737
Query: 621 TLQKDS*ERHFDCANIC**YNIWFY*CISLQRIF*VNAG*I*NEHDGRIEILSWNSNQPE 680
+L + + D +IC**+ +W +A *I*+E R ++ S ++ +
Sbjct: 3738 SLCQTRC*KLDDSTDIC**HCVWRDVE*DASTFCPTDAI*I*DESCWRADLFSGTPSEAD 3917
Query: 681 *RRSICSSNKVYKGASEEV*ARRL*SDEHSNASNLHLKQRRYWNCSRPEVIQRYDWFSVI 740
R I + +V K +EV + +++ +L +R W+ + +Q++DW I
Sbjct: 3918 GRLHIPLTKQVCKEHCQEVWDGKCQP*KNTCTYSLEAVKR*SWHQC*SKSVQKHDWELTI 4097
Query: 741 PHCI*T*YFIQCVLVCKISIRS*RISFNCS*ENLQVSERNN*SWTPV*EIPRL*VDWIL* 800
+ T*+ + +CKIS +S* S S EN ++ + + * W V + R W+L*
Sbjct: 4098 FNS*QT*HHLCSRCLCKISSQS*DKSLESSKENSEICKWHQ*LWDYVLSLFRFNAGWVL* 4277
Query: 801 C*LCW*QD*KKINQWKLSISGRESDILG*QKTSNYCYVYCRSRIHFSCKLLYTTTLDETS 860
C*L W *+K + W + + G +S + Q+ +YC SR++ S K L+TT+LDE
Sbjct: 4278 C*LGWKCR*QKKHFWWMFLFGNQSYFMVQQEAELCVPIYC*SRVYCSRKQLFTTSLDEAD 4457
Query: 861 VGRLSD*CLQYSHLL**YCCYLFVKESNSTF*SQAY*DQTPFYQRLC 907
+ + +L* + CY + +S ST +QA+* T Y R C
Sbjct: 4458 AEGVQCRTRCHDIVL*QHECY*YF*KSCSTQQNQAH*H*TSLY*RSC 4598
Score = 48.5 bits (114), Expect = 1e-05
Identities = 54/196 (27%), Positives = 94/196 (47%)
Frame = +3
Query: 121 C**LQQMDLGKIH*K*RLCL*SV*QLLHSNTI*KRIENFESQK*SWWRI*K*AI*IFL*K 180
C * Q+ LG+++ + L*S+ + + KR+ + E+Q+* W R+*K + L
Sbjct: 2334 CG*FLQIYLGQLYQREIRHL*SIQGVESKTSKRKRLCHQENQE*PWQRV*KQQVY*ILHI 2513
Query: 181 TWDSP*IFFS*NSTTKWGCREKEQNLTRNDQNHDP*KQFS*TFLGRSS*YFMLYSK*DLY 240
*+ S +TTKW +++Q+ R+ H ++ S LG S + ML+ +
Sbjct: 2514 *RHHS*VLCSHYTTTKWHS*KEKQDFARSC*GHASCQRTSL*SLG*SHEHSMLHPQQSHT 2693
Query: 241 QTYVGENCI*TL*RKKTQYLLLSSVWMYLLHSKH*RLSEEI*CQASKRNLFRLL*KVKGV 300
+ +* L R++ L +W +LH *R E+ Q RN+ +L K + +
Sbjct: 2694 *KRDSNHTV*NLEREEANCQALPHLWKSMLHFGR*RAKEKDGSQE*CRNILGILYKQQSI 2873
Query: 301 QSV*FRNTLC*RIYGC 316
S+ F+N C I+ C
Sbjct: 2874 *SIQFQNQNCDGIHQC 2921
>TC204439 UP|Q84VI4 (Q84VI4) Gag-pol polyprotein, complete
Length = 4731
Score = 127 bits (318), Expect = 3e-29
Identities = 142/493 (28%), Positives = 237/493 (47%)
Frame = +3
Query: 441 N*A*NC*RSSLR*WMDISYARRAKSVSEE*CVGSGTQTFSEEHYWNKMGIQKQAK*TRRG 500
N*A C R + R* +D YARR ++ +E* +G+ + W+++ +Q+Q +* R
Sbjct: 3195 N*AQECERGTDR*VLDQCYARRIGAIQKE*SLGASS*A*GN*CDWHQVDLQEQNQ*RRCH 3374
Query: 501 NQKQSQTCCSRLQSTRRH*LH*NICSNCKIGSNQVTSILRN*SWHNIISNGCKKCFS*WC 560
NQKQ QT CSRL S R L *+ C +C +Q+ + + +GC++ S W
Sbjct: 3375 NQKQGQTGCSRLHSD*RCRL**DFCPSC*T*VHQIITWCSLYPQIQAVPDGCEERISEWI 3554
Query: 561 H*RRSVC*TTSWI*GS*AS*PCL*T*EITIWLETSSQSLV**TK*FLN*K*F*KRTS*HN 620
RS+C I +S C+ E ++W+E SS+SLV* *+ +* +
Sbjct: 3555 PE*RSLCGAAKGICRPDSSRSCIQAQEGSLWIEASSKSLV*KANRVPYSARV*EGRN*QD 3734
Query: 621 TLQKDS*ERHFDCANIC**YNIWFY*CISLQRIF*VNAG*I*NEHDGRIEILSWNSNQPE 680
L + + DC +IC**+ +W +A *I*+E R ++ S S++ +
Sbjct: 3735 PLCQTRC*KLDDCTDIC**HCVWRDVE*DASTFCSTDAI*I*DESCWRADLFSGTSSEAD 3914
Query: 681 *RRSICSSNKVYKGASEEV*ARRL*SDEHSNASNLHLKQRRYWNCSRPEVIQRYDWFSVI 740
I + +V K +EV S + + +L + + + +Q++D I
Sbjct: 3915 GGLHIPLTKQVCKEHCQEVWDGECQS*KDTCTYSLEAVKG*SRHQC*SKSVQKHDRELTI 4094
Query: 741 PHCI*T*YFIQCVLVCKISIRS*RISFNCS*ENLQVSERNN*SWTPV*EIPRL*VDWIL* 800
+ T + + +CKIS +S S + S EN ++ + + * W V + + W+L*
Sbjct: 4095 FNS*QTRHHLCSRCLCKISSQSQDKSLDSSKENSEICKWH**LWDYVLSLFKSNAGWVL* 4274
Query: 801 C*LCW*QD*KKINQWKLSISGRESDILG*QKTSNYCYVYCRSRIHFSCKLLYTTTLDETS 860
C*L W *+K + W + + G++ + Q+ +Y RSR++ S K L+T +LDE
Sbjct: 4275 C*LGWKCR*QKKHFWWMLLFGKQPYFMVQQEAELCVPIYSRSRVYCSRKQLFTASLDEAD 4454
Query: 861 VGRLSD*CLQYSHLL**YCCYLFVKESNSTF*SQAY*DQTPFYQRLCSKRNFGYTIH*Y* 920
+ + +L* + CY + +S ST +QA+* T YQR C + *+*
Sbjct: 4455 AEGVQCRTRCHDIVL*QHECY*YF*KSCSTQQNQAH*H*TSLYQRSC***SDHTEAC*H* 4634
Query: 921 TSMS*YIYKTFIC 933
+ S Y +K F C
Sbjct: 4635 GTNSRYFHKGFGC 4673
Score = 45.1 bits (105), Expect = 2e-04
Identities = 53/196 (27%), Positives = 94/196 (47%)
Frame = +3
Query: 121 C**LQQMDLGKIH*K*RLCL*SV*QLLHSNTI*KRIENFESQK*SWWRI*K*AI*IFL*K 180
C * Q+ LGK++ + L*S+ ++ + +R+ + E+Q+* W RI*K + L
Sbjct: 2331 CG*FLQIYLGKLYQREIRNL*SIQRVESKTSKRERLCHQENQE*PWQRI*KQQVH*ILHI 2510
Query: 181 TWDSP*IFFS*NSTTKWGCREKEQNLTRNDQNHDP*KQFS*TFLGRSS*YFMLYSK*DLY 240
*+ S +TT+W E++Q+ R H ++ S LG S + ML+ +
Sbjct: 2511 *RHHS*VLCSHYTTTEWDS*EEKQDFARGCSGHASCQRTSL*SLG*SHEHSMLHPQQSHT 2690
Query: 241 QTYVGENCI*TL*RKKTQYLLLSSVWMYLLHSKH*RLSEEI*CQASKRNLFRLL*KVKGV 300
+ + +* L R++ L +W +LH *R ++ Q RN+ +L K + +
Sbjct: 2691 EKRDSNHPV*NLEREEAICQALPHLWKSMLHLGR*RAKKKDGSQE*CRNIPGILYKQQSI 2870
Query: 301 QSV*FRNTLC*RIYGC 316
S+ F+N I+ C
Sbjct: 2871 *SIQFQNQNSDGIHQC 2918
>AI959950
Length = 466
Score = 79.7 bits (195), Expect = 6e-15
Identities = 52/128 (40%), Positives = 74/128 (57%)
Frame = -3
Query: 458 SYARRAKSVSEE*CVGSGTQTFSEEHYWNKMGIQKQAK*TRRGNQKQSQTCCSRLQSTRR 517
S ARR SVS+E*C+ + T +E W++M I Q + G + QS+ C RL +T R
Sbjct: 392 SDARRT*SVSKE*CLEAR*ITKKKEGSWSEMDIL*QTRRGW*GCEIQSKISC*RLLTTGR 213
Query: 518 H*LH*NICSNCKIGSNQVTSILRN*SWHNIISNGCKKCFS*WCH*RRSVC*TTSWI*GS* 577
+ L N+C+ C SN + + N + ++SNGCKKC S W + + S+C*TT+WI*
Sbjct: 212 YRLPKNLCTCCTFRSNMHLTFICNL**YEVVSNGCKKCISKWLNPKGSLC*TTAWI*K*N 33
Query: 578 AS*PCL*T 585
S C *T
Sbjct: 32 PSSTCF*T 9
>TC232995
Length = 1009
Score = 73.9 bits (180), Expect = 3e-13
Identities = 60/169 (35%), Positives = 93/169 (54%)
Frame = +1
Query: 568 *TTSWI*GS*AS*PCL*T*EITIWLETSSQSLV**TK*FLN*K*F*KRTS*HNTLQKDS* 627
*TT W * * + PCL* + ++W ETS +V* K*F +*K +R S ++ + K+
Sbjct: 4 *TTPWF*NF**TKPCL*ITKGSLWFETSP*GMV*TIK*FSS*KRILQR*SGYHIIHKEKA 183
Query: 628 ERHFDCANIC**YNIWFY*CISLQRIF*VNAG*I*NEHDGRIEILSWNSNQPE*RRSICS 687
+F +NIC**YN W +* +Q +F A *I*N +DGR ++LS +NQ R I
Sbjct: 184 **YFVGSNIC**YNFWIH**FIVQGVFP*YAK*I*NVNDGRTKVLSGITNQANSIRYIHQ 363
Query: 688 SNKVYKGASEEV*ARRL*SDEHSNASNLHLKQRRYWNCSRPEVIQRYDW 736
S ++ +G +++ + +++ L L+ R W+ R + I R W
Sbjct: 364 SIQILQGIDQKIWDG*CKTHVYTDEH*LLLR*R*IWSVYRHKTISRCYW 510
>AI855818 weakly similar to GP|21741393|e OSJNBb0051N19.6 {Oryza sativa
(japonica cultivar-group)}, partial (10%)
Length = 463
Score = 67.8 bits (164), Expect = 2e-11
Identities = 59/152 (38%), Positives = 82/152 (53%), Gaps = 4/152 (2%)
Frame = -2
Query: 459 YARRAKSVSEE*CVGSGTQTFSEEHYWNKMGIQKQAK*TRRGNQKQSQTCCSRLQSTRRH 518
+ARR +S+ ++*CV + +T + NKMG K +*T K R+ S R +
Sbjct: 456 HARRTESI*KK*CVETSRKT*KLSCHRNKMGF*K*IR*TWHNY*K*G*ISSKRV*SRRGN 277
Query: 519 *LH*NICSNCKIGSN-QVTSILRN*SWHN---IISNGCKKCFS*WCH*RRSVC*TTSWI* 574
L NICS+CKI S+ SI HN +SNGC KCFS W + RRS+C*TT +*
Sbjct: 276 RL*RNICSSCKIRSH*NAFSICI----HNEF*TLSNGC*KCFSKWFNSRRSIC*TTPRL* 109
Query: 575 GS*AS*PCL*T*EITIWLETSSQSLV**TK*F 606
+ CL* + ++W +TS +V* K F
Sbjct: 108 NPG*TNSCL*IAKGSLWFKTSP*GVV*TYKQF 13
>TC211311 weakly similar to UP|O24587 (O24587) Pol protein, partial (15%)
Length = 1213
Score = 55.5 bits (132), Expect(2) = 1e-09
Identities = 60/177 (33%), Positives = 94/177 (52%), Gaps = 6/177 (3%)
Frame = +2
Query: 636 IC**YNIWFY*CISLQRIF*VNAG*I*NEHDGRIEILSWNSNQPE*RRSICSSNKVYKGA 695
+C**+N+W +Q +F*VN G I*NE++ ++ SN E S ++YK
Sbjct: 503 LC**HNLWCNLKKDVQGVF*VNEGWI*NEYER*AKVPPRTSNHSESLWDFYPSREIYKVP 682
Query: 696 SEEV*ARRL*SDEHSNA-SNLHL-----KQRRYWNCSRPEVIQRYDWFSVIPHCI*T*YF 749
S++V + *S + N ++ H ++ Y+ + + YD F +I + *T Y
Sbjct: 683 SKKV--QNG*SQTYGNPYASFHNH*QG*ER*SYFI----KGV*WYD*FFIIFNF**TRYC 844
Query: 750 IQCVLVCKISIRS*RISFNCS*ENLQVSERNN*SWTPV*EIPRL*VDWIL*C*LCW* 806
+ + +CKIS+ S S CS*++L++S N *S + V*E +* IL*C CW*
Sbjct: 845 VCRLPLCKISVLSKNFSCYCS*KDLKISCWNY*SLSMV*EKV*V*SFRIL*CLFCW* 1015
Score = 26.6 bits (57), Expect(2) = 1e-09
Identities = 17/42 (40%), Positives = 24/42 (56%)
Frame = +1
Query: 590 IWLETSSQSLV**TK*FLN*K*F*KRTS*HNTLQKDS*ERHF 631
+W ETSS+SLV* K + K +R + T+QK S + F
Sbjct: 364 LWFETSSKSLV*KAKFISSFKWIHQRNNGPRTIQKGSKRKPF 489
>BM143109
Length = 415
Score = 52.0 bits (123), Expect = 1e-06
Identities = 44/121 (36%), Positives = 64/121 (52%)
Frame = +3
Query: 579 S*PCL*T*EITIWLETSSQSLV**TK*FLN*K*F*KRTS*HNTLQKDS*ERHFDCANIC* 638
+* CL*T + IW++TS LV* +* + F KR *+ E + +IC*
Sbjct: 33 A*SCL*TEKGFIWIKTSP*GLV*TFE*ISFRQGFFKR*G*Y*PFYLKEIE*YTLSTDIC* 212
Query: 639 *YNIWFY*CISLQRIF*VNAG*I*NEHDGRIEILSWNSNQPE*RRSICSSNKVYKGASEE 698
*Y WF * SLQ+IF A *I*N +D +++ SW +NQ +I S K+ + +
Sbjct: 213 *YYFWFN**FSLQKIFSRYAK*I*NVNDA*VKLFSWTTNQANKEWNIYQSIKILQRPDSQ 392
Query: 699 V 699
+
Sbjct: 393 I 395
>BF596801 weakly similar to GP|29423270|g gag-pol polyprotein {Glycine max},
partial (7%)
Length = 336
Score = 48.5 bits (114), Expect = 1e-05
Identities = 35/86 (40%), Positives = 46/86 (52%)
Frame = +2
Query: 448 RSSLR*WMDISYARRAKSVSEE*CVGSGTQTFSEEHYWNKMGIQKQAK*TRRGNQKQSQT 507
RS R* +D +ARR K + ++ C+ +T YWNKMG K +*T K SQ
Sbjct: 20 RSHSR**LDHCHARRTKPI*KKQCMEISRKT*KLSCYWNKMGF*K*IR*TWYNY*K*SQV 199
Query: 508 CCSRLQSTRRH*LH*NICSNCKIGSN 533
R+ S R + L NICS CKI S+
Sbjct: 200 SSERI*SRRGNRL*RNICSCCKIRSH 277
>TC213445
Length = 705
Score = 43.9 bits (102), Expect = 3e-04
Identities = 30/76 (39%), Positives = 44/76 (57%)
Frame = +3
Query: 824 SDILG*QKTSNYCYVYCRSRIHFSCKLLYTTTLDETSVGRLSD*CLQYSHLL**YCCYLF 883
S I+ * K C + CRSRI+F KLL T LDET+ L Y++ +* Y C
Sbjct: 450 SSIMA**KAK*CCLINCRSRIYFC*KLLCTNLLDETTTF*LWFET*SYTYPM*QYKCN*S 629
Query: 884 VKESNSTF*SQAY*DQ 899
+++S S *++AY*++
Sbjct: 630 IQKSYSVL*NKAY*NK 677
Score = 30.0 bits (66), Expect = 5.1
Identities = 15/31 (48%), Positives = 21/31 (67%)
Frame = +1
Query: 746 T*YFIQCVLVCKISIRS*RISFNCS*ENLQV 776
T Y + C+ VCKIS +S RIS C *+N ++
Sbjct: 232 TSYNV*CLYVCKISSKSQRISPKCH*KNNEI 324
>AI855982
Length = 484
Score = 39.3 bits (90), Expect = 0.008
Identities = 41/123 (33%), Positives = 60/123 (48%)
Frame = +1
Query: 448 RSSLR*WMDISYARRAKSVSEE*CVGSGTQTFSEEHYWNKMGIQKQAK*TRRGNQKQSQT 507
RS R* +D +ARR +S+ ++*CV + +T + NKMG+ K +*T T
Sbjct: 115 RSHSR**LDNCHARRTESI*KK*CVETSRKT**LSCHMNKMGL*K*IR*TSHNYYT*G*T 294
Query: 508 CCSRLQSTRRH*LH*NICSNCKIGSNQVTSILRN*SWHNIISNGCKKCFS*WCH*RRSVC 567
RL S+RR L IC C I S+ I+ + +S KC + W S+C
Sbjct: 295 SSRRL*SSRRTRL*TYICFYC*IISHYNAFIICIHNEFYTLSLCMCKCSTSWPTPT*SLC 474
Query: 568 *TT 570
*+T
Sbjct: 475 *ST 483
>CO983516
Length = 724
Score = 34.3 bits (77), Expect = 0.27
Identities = 29/96 (30%), Positives = 49/96 (50%)
Frame = +1
Query: 548 ISNGCKKCFS*WCH*RRSVC*TTSWI*GS*AS*PCL*T*EITIWLETSSQSLV**TK*FL 607
+ +GC++ S W RS+C I S +S C+ E ++W+E SS+SLV*
Sbjct: 436 VPDGCEERVSEWIPE*RSLCGAAKGIYRSNSSRSCIQAQEGSLWIEASSKSLV*KANRVT 615
Query: 608 N*K*F*KRTS*HNTLQKDS*ERHFDCANIC**YNIW 643
*+ +* ++L + + D +IC**+ +W
Sbjct: 616 YSARV*EGRN*QDSLCQTRC*KLDDSTDIC**HCVW 723
>AI966222
Length = 430
Score = 33.5 bits (75), Expect = 0.46
Identities = 22/63 (34%), Positives = 37/63 (57%)
Frame = +3
Query: 212 NHDP*KQFS*TFLGRSS*YFMLYSK*DLYQTYVGENCI*TL*RKKTQYLLLSSVWMYLLH 271
NH * * LG S+ Y ML S+ +LY+T++ ++ +* + KTQ+++ S + + H
Sbjct: 12 NHAK**LNP*ALLG*SNEYCMLSSEQNLYKTHLEKDSL*IMEGTKTQHIIFLSF*V*VFH 191
Query: 272 SKH 274
KH
Sbjct: 192 YKH 200
>BI469652 weakly similar to GP|18149115|dbj| reverse transcriptase {Silene
noctiflora}, partial (60%)
Length = 427
Score = 32.0 bits (71), Expect = 1.3
Identities = 27/62 (43%), Positives = 32/62 (51%)
Frame = +2
Query: 545 HNIISNGCKKCFS*WCH*RRSVC*TTSWI*GS*AS*PCL*T*EITIWLETSSQSLV**TK 604
H SNG K F +*R SVC TTS + S P T + IW ET + LV**T+
Sbjct: 242 HKSFSNGY*KWFFK*LY*RGSVCQTTSKLCRPYTSRPYFQTSKGFIWSETGTLCLV**TE 421
Query: 605 *F 606
F
Sbjct: 422 LF 427
>CO983154
Length = 568
Score = 31.6 bits (70), Expect = 1.7
Identities = 27/82 (32%), Positives = 40/82 (47%), Gaps = 1/82 (1%)
Frame = +2
Query: 192 NSTTKWGCREKEQNLTRNDQNHDP*KQFS*TFLGRSS*YFMLYSK*DLYQTYVGENCI*T 251
++TTKW CR++E + + N + + S T LGR YF+ +K D + N T
Sbjct: 5 HTTTKWYCRKEESSSS*NCTLPNAKFECSDTSLGRCGAYFLFPNKSDAFFFS*KPNSSLT 184
Query: 252 L*RKKTQYLLLS-SVWMYLLHS 272
+ LS SVW+YL S
Sbjct: 185 CLSS*SFISCLS*SVWLYLFCS 250
>CO981945
Length = 584
Score = 30.8 bits (68), Expect = 3.0
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = -3
Query: 811 KINQWKLSISGRESDILG*QKTSNYCYVYCRSRI 844
KIN W + + ESD++ ++ C +YCRSRI
Sbjct: 441 KINIWGMHLP*PESDLMVVKEADLDCLLYCRSRI 340
>TC232593 weakly similar to UP|Q9XG91 (Q9XG91) Tpv2-1c protein (Fragment),
partial (16%)
Length = 562
Score = 30.0 bits (66), Expect = 5.1
Identities = 20/74 (27%), Positives = 36/74 (48%)
Frame = +3
Query: 670 EILSWNSNQPE*RRSICSSNKVYKGASEEV*ARRL*SDEHSNASNLHLKQRRYWNCSRPE 729
++ SWN +Q + +S+ S ++ K EEV + H+N S ++Q R +
Sbjct: 309 DLFSWN*DQAKSEQSVNLSKEICKRNFEEVSNGGMQIC*HTNESKGEVQQGRRC**N**R 488
Query: 730 VIQRYDWFSVIPHC 743
++ DW S + HC
Sbjct: 489 IL*ELDWMSNVSHC 530
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.390 0.173 0.760
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,434,198
Number of Sequences: 63676
Number of extensions: 640390
Number of successful extensions: 11222
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 2419
Number of HSP's successfully gapped in prelim test: 304
Number of HSP's that attempted gapping in prelim test: 8660
Number of HSP's gapped (non-prelim): 3069
length of query: 954
length of database: 12,639,632
effective HSP length: 106
effective length of query: 848
effective length of database: 5,889,976
effective search space: 4994699648
effective search space used: 4994699648
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 13 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 34 (21.7 bits)
S2: 64 (29.3 bits)
Medicago: description of AC141862.20