BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC141436.3 + phase: 0 /pseudo
(223 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC212986 104 3e-23
TC220753 66 1e-11
BE806360 similar to GP|6175165|gb| Mutator-like transposase {Ara... 30 0.87
TC222000 weakly similar to PIR|H84710|H84710 Mutator-like transp... 28 3.3
TC231498 similar to UP|Q9LF43 (Q9LF43) Spindle pole body protein... 28 4.3
TC204000 homologue to UP|Q84XC3 (Q84XC3) Ubiquitin/ribosomal fus... 28 4.3
TC226196 UP|Q8L5W2 (Q8L5W2) BZIP transcription factor ATB2, comp... 27 5.6
TC210254 similar to GB|AAM26637.1|20855902|AY101516 AT3g06940/F1... 27 7.4
BE821827 27 7.4
AI900924 similar to SP|P16148|PZ12_ PPLZ12 protein. [Large-leave... 27 7.4
TC228022 weakly similar to UP|Q93Z38 (Q93Z38) At1g34060/F12G12_1... 27 7.4
TC219553 similar to UP|Q94F45 (Q94F45) AT4g18020/T6K21_200, part... 27 7.4
TC208843 similar to UP|Q9FHM7 (Q9FHM7) Gb|AAF03497.1 (At5g51570)... 27 7.4
>TC212986
Length = 404
Score = 104 bits (260), Expect = 3e-23
Identities = 48/113 (42%), Positives = 75/113 (65%)
Frame = +1
Query: 39 ALAWVDNIPKQKWNQSHDDGRRWGHMTSNLVESQNNVYKGIRGLPITAIVKASYYRLAAL 98
A W+D +PKQKW Q D+G+RWG +T+NL ES N+++K R L ++++V+ +Y++ A L
Sbjct: 43 AAEWLDQLPKQKWVQCFDEGKRWG-LTTNLSESVNSMFKNTRHLSVSSLVEETYFKTAQL 219
Query: 99 FAKRGHEAAARVNSGEPFSENSMKYLRNEVIKSNSHHVTQFDRDRYTFSVRET 151
FA RG + A +NSG +SE + + +SN+H V +FDR +TF + ET
Sbjct: 220 FANRGRQTQAMINSGSQYSEVVFDAINSGQQESNTHIVNEFDRHNHTFIITET 378
>TC220753
Length = 1312
Score = 65.9 bits (159), Expect = 1e-11
Identities = 36/110 (32%), Positives = 56/110 (50%)
Frame = +2
Query: 110 VNSGEPFSENSMKYLRNEVIKSNSHHVTQFDRDRYTFSVRETIEHKEGLPKGEYKVDLQN 169
+ +G +SE+ ++ + SH+V + R+ V+E + G V L
Sbjct: 50 IKAGHRYSEDVYVMMQENQHIATSHYVRMYVRETKEXEVQEIANTRLGRRGMACTVKLNE 229
Query: 170 KWCDCGRFRALHLPCSHVIAACSSFSHDYKTFVDNKFTNECVYAVYNIHF 219
CD G+F+AL LPCSH IAAC+ + +Y FVD + E ++ VY HF
Sbjct: 230 WLCDYGQFQALRLPCSHAIAACAFCNLNYDDFVDPVYKLENIFKVYQHHF 379
>BE806360 similar to GP|6175165|gb| Mutator-like transposase {Arabidopsis
thaliana}, partial (17%)
Length = 431
Score = 30.0 bits (66), Expect = 0.87
Identities = 11/29 (37%), Positives = 20/29 (68%)
Frame = +2
Query: 43 VDNIPKQKWNQSHDDGRRWGHMTSNLVES 71
+D+ W ++ +G R+GH+T+N+VES
Sbjct: 326 IDSRIPSLWATAYFEGHRFGHLTANIVES 412
>TC222000 weakly similar to PIR|H84710|H84710 Mutator-like transposase
[imported] - Arabidopsis thaliana {Arabidopsis
thaliana;} , partial (12%)
Length = 617
Score = 28.1 bits (61), Expect = 3.3
Identities = 14/43 (32%), Positives = 20/43 (45%)
Frame = +2
Query: 165 VDLQNKWCDCGRFRALHLPCSHVIAACSSFSHDYKTFVDNKFT 207
V++ + C C ++ +PCSH AA S D F FT
Sbjct: 20 VNIGSHSCSCRDWQLNGIPCSHAAAALISCRKDVYAFSQKCFT 148
>TC231498 similar to UP|Q9LF43 (Q9LF43) Spindle pole body protein-like,
partial (37%)
Length = 848
Score = 27.7 bits (60), Expect = 4.3
Identities = 15/62 (24%), Positives = 27/62 (43%)
Frame = +1
Query: 155 KEGLPKGEYKVDLQNKWCDCGRFRALHLPCSHVIAACSSFSHDYKTFVDNKFTNECVYAV 214
K+G+P + ++ G++ + C H + A S + +F N EC+ A
Sbjct: 4 KDGIPS--FLANIAGAILTTGKYLNVMRECGHTVRAPPSENSKLMSFGSNHHYLECIKAA 177
Query: 215 YN 216
YN
Sbjct: 178 YN 183
>TC204000 homologue to UP|Q84XC3 (Q84XC3) Ubiquitin/ribosomal fusion protein,
partial (56%)
Length = 1061
Score = 27.7 bits (60), Expect = 4.3
Identities = 11/29 (37%), Positives = 17/29 (57%)
Frame = +3
Query: 148 VRETIEHKEGLPKGEYKVDLQNKWCDCGR 176
V+ TI+HKEG+P ++ K + GR
Sbjct: 15 VKXTIQHKEGIPTXXQRIXXTRKQLEYGR 101
>TC226196 UP|Q8L5W2 (Q8L5W2) BZIP transcription factor ATB2, complete
Length = 1518
Score = 27.3 bits (59), Expect = 5.6
Identities = 17/40 (42%), Positives = 20/40 (49%)
Frame = -1
Query: 43 VDNIPKQKWNQSHDDGRRWGHMTSNLVESQNNVYKGIRGL 82
V N +KW DGRR+ NLVE + Y IRGL
Sbjct: 252 VSNFGAEKW-----DGRRFVMWGLNLVEVEEEGYLMIRGL 148
>TC210254 similar to GB|AAM26637.1|20855902|AY101516 AT3g06940/F17A9_9
{Arabidopsis thaliana;} , partial (6%)
Length = 814
Score = 26.9 bits (58), Expect = 7.4
Identities = 13/45 (28%), Positives = 18/45 (39%)
Frame = +1
Query: 165 VDLQNKWCDCGRFRALHLPCSHVIAACSSFSHDYKTFVDNKFTNE 209
VD+ N C C ++ +PC H IA + FT E
Sbjct: 67 VDIDNWDCSCKGWQLTGVPCCHAIAVFECVGRSPYDYCSRYFTVE 201
>BE821827
Length = 575
Score = 26.9 bits (58), Expect = 7.4
Identities = 25/109 (22%), Positives = 47/109 (42%), Gaps = 3/109 (2%)
Frame = -1
Query: 73 NNVYKGIRGLPITAIVKASYYRLAALFAK---RGHEAAARVNSGEPFSENSMKYLRNEVI 129
++V G+ G +T + + R ++F + G AA GEP + +KY+ +++
Sbjct: 569 SDVMIGVHGAAMTHFL---FLRPGSVFIQVVPLGTTWAAETYYGEPARKLGLKYIGYQIL 399
Query: 130 KSNSHHVTQFDRDRYTFSVRETIEHKEGLPKGEYKVDLQNKWCDCGRFR 178
S ++D++ +I K + +D QN D RFR
Sbjct: 398 PRESTLYEKYDKNDPILRDPTSINKKGWEYTKKIYLDSQNVMLDLRRFR 252
>AI900924 similar to SP|P16148|PZ12_ PPLZ12 protein. [Large-leaved lupine]
{Lupinus polyphyllus}, partial (36%)
Length = 421
Score = 26.9 bits (58), Expect = 7.4
Identities = 16/35 (45%), Positives = 18/35 (50%)
Frame = -3
Query: 112 SGEPFSENSMKYLRNEVIKSNSHHVTQFDRDRYTF 146
S FS N L +VIK H V DR+RYTF
Sbjct: 326 SSTKFSRN---ILHTQVIKLEYHCVCVCDRERYTF 231
>TC228022 weakly similar to UP|Q93Z38 (Q93Z38) At1g34060/F12G12_150, partial
(54%)
Length = 1272
Score = 26.9 bits (58), Expect = 7.4
Identities = 10/29 (34%), Positives = 18/29 (61%)
Frame = +2
Query: 134 HHVTQFDRDRYTFSVRETIEHKEGLPKGE 162
HH+T++ R+ FS+ + KE P+G+
Sbjct: 335 HHITRYIEHRHNFSILGILVMKEKHPRGK 421
>TC219553 similar to UP|Q94F45 (Q94F45) AT4g18020/T6K21_200, partial (8%)
Length = 932
Score = 26.9 bits (58), Expect = 7.4
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = -3
Query: 27 YYRSEIDVADRKALAWVDNIPKQKWNQ 53
Y R++ + + L W D I K KW+Q
Sbjct: 477 YVRADNSIGETLKLVWWDQINKTKWSQ 397
>TC208843 similar to UP|Q9FHM7 (Q9FHM7) Gb|AAF03497.1 (At5g51570), partial
(97%)
Length = 1126
Score = 26.9 bits (58), Expect = 7.4
Identities = 16/35 (45%), Positives = 18/35 (50%)
Frame = -3
Query: 112 SGEPFSENSMKYLRNEVIKSNSHHVTQFDRDRYTF 146
S FS N L +VIK H V DR+RYTF
Sbjct: 1034 SSTKFSRN---ILHTQVIKLEYHCVCVCDRERYTF 939
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.320 0.135 0.417
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,040,206
Number of Sequences: 63676
Number of extensions: 137359
Number of successful extensions: 678
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 677
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 677
length of query: 223
length of database: 12,639,632
effective HSP length: 94
effective length of query: 129
effective length of database: 6,654,088
effective search space: 858377352
effective search space used: 858377352
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)
Medicago: description of AC141436.3