BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC141414.1 - phase: 0
(104 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC220683 107 7e-25
TC209877 28 0.91
TC231377 similar to UP|Q8LA13 (Q8LA13) ATP-dependent RNA helicas... 26 2.6
TC226382 similar to UP|GS11_ARATH (Q9LMP7) Golgi SNARE 11 protei... 26 3.5
TC214666 UP|Q6YGT9 (Q6YGT9) Purple acid phosphatase-like protein... 26 3.5
BU544601 25 4.5
TC212251 weakly similar to UP|Q9LJS0 (Q9LJS0) Leucine-rich repea... 25 4.5
TC210383 similar to UP|Q764C1 (Q764C1) Acid phosphatase precurso... 25 4.5
BM886521 25 4.5
TC228288 25 5.9
TC210425 25 5.9
TC207101 similar to UP|O24342 (O24342) Serine/threonine kinase ,... 25 5.9
TC228128 similar to UP|Q9ZPL9 (Q9ZPL9) Nodule-enhanced protein p... 25 5.9
TC217768 25 5.9
TC215204 similar to UP|Q8LDQ4 (Q8LDQ4) PP2A regulatory subunit, ... 25 5.9
TC211837 similar to UP|Q39029 (Q39029) Protein kinase , partial ... 25 5.9
CF920991 25 5.9
TC234065 25 7.7
TC216642 similar to UP|P93697 (P93697) CPRD12 protein, partial (... 25 7.7
TC229745 25 7.7
>TC220683
Length = 859
Score = 107 bits (268), Expect = 7e-25
Identities = 50/70 (71%), Positives = 56/70 (79%)
Frame = +1
Query: 25 VMSSEKEELSSTVKRKLSCFEHFDALWFCYSPVYQMKQYYRLGTLDNCRGKWKAWTDCLM 84
+MS EKE SST RKLSC FDA++FCYSPV+QM+QYYRLG DNC GKWKA DCLM
Sbjct: 271 MMSMEKEASSSTPTRKLSCTACFDAVYFCYSPVHQMQQYYRLGKFDNCSGKWKAMVDCLM 450
Query: 85 LKTKPKSQVE 94
LKTKP SQV+
Sbjct: 451 LKTKPTSQVQ 480
>TC209877
Length = 754
Score = 27.7 bits (60), Expect = 0.91
Identities = 18/69 (26%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Frame = -2
Query: 1 MVIYDMTGFFSKEFIGCSNFQFVAVMSSEKEELSSTVKRKLSCFEHFDALWFCYS---PV 57
M+ YD +G +S+ CS ++ +S K + V + + HF ++ FC++
Sbjct: 228 ML*YD-SGIYSR----CSFLKWATYLSCMKIQADKRVNKVVFSLFHFQSICFCWNIS*YQ 64
Query: 58 YQMKQYYRL 66
Y M++Y+ L
Sbjct: 63 YYMQEYFTL 37
>TC231377 similar to UP|Q8LA13 (Q8LA13) ATP-dependent RNA helicase-like
protein, partial (15%)
Length = 770
Score = 26.2 bits (56), Expect = 2.6
Identities = 12/32 (37%), Positives = 18/32 (55%)
Frame = -3
Query: 53 CYSPVYQMKQYYRLGTLDNCRGKWKAWTDCLM 84
C P+ + +YRL + R W A+TDCL+
Sbjct: 663 CLLPLLSL--FYRLKQVIPVRNFWVAYTDCLL 574
>TC226382 similar to UP|GS11_ARATH (Q9LMP7) Golgi SNARE 11 protein (AtGOS11)
(Golgi SNAP receptor complex member 1-1), complete
Length = 1040
Score = 25.8 bits (55), Expect = 3.5
Identities = 18/58 (31%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Frame = +1
Query: 4 YDMTGFFSKE---FIGCSNFQFVAVMSSEKEELSSTVKRKLSCFEHFDALWFCYSPVY 58
+ TG+ S+E F+GCSNF +++ ELSS+ + + HF + F ++P++
Sbjct: 847 FSSTGYPSEEVVVFVGCSNFCMLSI------ELSSSCRAE----THFASSMF-FNPLF 987
>TC214666 UP|Q6YGT9 (Q6YGT9) Purple acid phosphatase-like protein, complete
Length = 1821
Score = 25.8 bits (55), Expect = 3.5
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +2
Query: 58 YQMKQYYRLGTLDNCRGKWKAWTDCLMLKTKPK 90
Y+ K YYR+G+ D+ R W KT PK
Sbjct: 521 YETKYYYRIGSGDSSREFW--------FKTPPK 595
>BU544601
Length = 518
Score = 25.4 bits (54), Expect = 4.5
Identities = 10/36 (27%), Positives = 16/36 (43%)
Frame = -2
Query: 51 WFCYSPVYQMKQYYRLGTLDNCRGKWKAWTDCLMLK 86
WF S + Q++ + RG W WT C ++
Sbjct: 403 WFIDSLFFWRSQHHPRRNNQSPRGSWMTWTWCYAME 296
>TC212251 weakly similar to UP|Q9LJS0 (Q9LJS0) Leucine-rich repeat disease
resistance protein-like, partial (12%)
Length = 660
Score = 25.4 bits (54), Expect = 4.5
Identities = 8/27 (29%), Positives = 15/27 (54%)
Frame = -2
Query: 73 RGKWKAWTDCLMLKTKPKSQVEVGSYF 99
+G W +DC++ K KP +++ F
Sbjct: 140 KGSWNGTSDCIVRKVKPFERMQFAKDF 60
>TC210383 similar to UP|Q764C1 (Q764C1) Acid phosphatase precursor, partial
(38%)
Length = 580
Score = 25.4 bits (54), Expect = 4.5
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +2
Query: 58 YQMKQYYRLGTLDNCRGKW 76
Y+ K YYR+G+ D+ R W
Sbjct: 419 YKTKYYYRIGSGDSARDFW 475
>BM886521
Length = 424
Score = 25.4 bits (54), Expect = 4.5
Identities = 9/27 (33%), Positives = 15/27 (55%)
Frame = +2
Query: 50 LWFCYSPVYQMKQYYRLGTLDNCRGKW 76
L C + +Y + YY +GT+ + KW
Sbjct: 164 LRLC*TTIYIIYSYYAMGTIS*AKSKW 244
>TC228288
Length = 1002
Score = 25.0 bits (53), Expect = 5.9
Identities = 12/38 (31%), Positives = 17/38 (44%)
Frame = +2
Query: 34 SSTVKRKLSCFEHFDALWFCYSPVYQMKQYYRLGTLDN 71
S +KR++ H+DALW C +Q DN
Sbjct: 563 SREMKRRIVGLLHYDALWQCLRKDINHRQTAHQNRTDN 676
>TC210425
Length = 872
Score = 25.0 bits (53), Expect = 5.9
Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 5/28 (17%)
Frame = -2
Query: 53 CYSPVYQMKQ-----YYRLGTLDNCRGK 75
CY+P KQ ++RLG + C GK
Sbjct: 463 CYAPQGSSKQMEWSQFHRLGATETCEGK 380
>TC207101 similar to UP|O24342 (O24342) Serine/threonine kinase , partial (98%)
Length = 1719
Score = 25.0 bits (53), Expect = 5.9
Identities = 13/30 (43%), Positives = 18/30 (59%)
Frame = -2
Query: 15 IGCSNFQFVAVMSSEKEELSSTVKRKLSCF 44
+GCS+F V SSE + +ST R +S F
Sbjct: 1109 VGCSSFFSVTWCSSESLKTASTSSRLVSPF 1020
>TC228128 similar to UP|Q9ZPL9 (Q9ZPL9) Nodule-enhanced protein phosphatase
type 2C, partial (51%)
Length = 807
Score = 25.0 bits (53), Expect = 5.9
Identities = 13/51 (25%), Positives = 23/51 (44%), Gaps = 3/51 (5%)
Frame = -3
Query: 7 TGFFSKEFIGCSNFQF---VAVMSSEKEELSSTVKRKLSCFEHFDALWFCY 54
T ++ + I C N + ++ S K + K K +CF+ +A CY
Sbjct: 784 THYYQVDIISCGNEEAQPECILVQSSKARIREENKNKNTCFDRNEASISCY 632
>TC217768
Length = 1516
Score = 25.0 bits (53), Expect = 5.9
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -3
Query: 74 GKWKAWTDCLMLKTK 88
GKW WT+CL+ +K
Sbjct: 854 GKWGLWTNCLLSVSK 810
>TC215204 similar to UP|Q8LDQ4 (Q8LDQ4) PP2A regulatory subunit, partial
(10%)
Length = 689
Score = 25.0 bits (53), Expect = 5.9
Identities = 12/40 (30%), Positives = 18/40 (45%)
Frame = -1
Query: 14 FIGCSNFQFVAVMSSEKEELSSTVKRKLSCFEHFDALWFC 53
F+ N F++ ++S V SCF HF +FC
Sbjct: 548 FLPRENMSFISYSYKSLLDISFLV----SCFNHFSVFFFC 441
>TC211837 similar to UP|Q39029 (Q39029) Protein kinase , partial (52%)
Length = 650
Score = 25.0 bits (53), Expect = 5.9
Identities = 8/18 (44%), Positives = 11/18 (60%)
Frame = -1
Query: 34 SSTVKRKLSCFEHFDALW 51
S +K K +C+ H ALW
Sbjct: 302 SGNIKSKSNCYAHIQALW 249
>CF920991
Length = 491
Score = 25.0 bits (53), Expect = 5.9
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = -1
Query: 50 LWFCYSPVYQMKQY 63
+WFCYSPV K +
Sbjct: 284 IWFCYSPVIPPKNW 243
>TC234065
Length = 433
Score = 24.6 bits (52), Expect = 7.7
Identities = 14/58 (24%), Positives = 22/58 (37%)
Frame = +3
Query: 15 IGCSNFQFVAVMSSEKEELSSTVKRKLSCFEHFDALWFCYSPVYQMKQYYRLGTLDNC 72
IGC+ F+ + ++ LSC HF + S +Y Y+ L C
Sbjct: 183 IGCAISAFMDELHCFCSRTHRSLCHLLSCIYHFPSYHITISCIYHFPSYHPLHMQRGC 356
>TC216642 similar to UP|P93697 (P93697) CPRD12 protein, partial (74%)
Length = 929
Score = 24.6 bits (52), Expect = 7.7
Identities = 8/29 (27%), Positives = 13/29 (44%)
Frame = +2
Query: 51 WFCYSPVYQMKQYYRLGTLDNCRGKWKAW 79
W CY+ +++ K +C G W W
Sbjct: 293 WRCYTCLHKFKARTNWTDKKHCGGAWTTW 379
>TC229745
Length = 926
Score = 24.6 bits (52), Expect = 7.7
Identities = 15/52 (28%), Positives = 24/52 (45%), Gaps = 4/52 (7%)
Frame = -2
Query: 54 YSPVYQMKQYYRLGTLDNCRGKWK----AWTDCLMLKTKPKSQVEVGSYFLL 101
YSP Y+ Q T DNC GK + WT L + +++ +++L
Sbjct: 424 YSPTYRTTQ----RTRDNCHGKIRQEEELWTQIKQLTIQKQNRTIQNQHWML 281
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.326 0.137 0.445
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,140,443
Number of Sequences: 63676
Number of extensions: 93397
Number of successful extensions: 651
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 649
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 651
length of query: 104
length of database: 12,639,632
effective HSP length: 80
effective length of query: 24
effective length of database: 7,545,552
effective search space: 181093248
effective search space used: 181093248
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 51 (24.3 bits)
Medicago: description of AC141414.1