BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC141323.18 - phase: 0
(1638 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CF922488 211 2e-54
TC223727 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, part... 186 1e-46
NP595172 polyprotein [Glycine max] 179 9e-45
NP334778 reverse transcriptase [Glycine max] 158 2e-38
NP395547 reverse transcriptase [Glycine max] 151 2e-36
TC233837 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, part... 145 1e-34
NP395548 reverse transcriptase [Glycine max] 139 1e-32
TC211815 80 9e-30
BI316922 125 2e-28
TC212032 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, part... 91 3e-24
BG725601 similar to PIR|H86337|H86 protein F5M15.26 [imported] -... 105 2e-22
TC224482 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, part... 85 3e-16
BI321666 79 1e-14
AW184779 77 6e-14
TC219643 weakly similar to UP|Q6WAY7 (Q6WAY7) Gag/pol polyprotei... 76 1e-13
BQ628592 52 9e-13
BE801213 weakly similar to GP|6691193|gb| F7F22.17 {Arabidopsis ... 52 8e-12
BE802896 65 2e-10
BE660092 weakly similar to GP|9884624|dbj retroelement pol polyp... 62 2e-09
TC220664 weakly similar to UP|Q84TE0 (Q84TE0) At5g51080, partial... 61 5e-09
>CF922488
Length = 741
Score = 211 bits (538), Expect = 2e-54
Identities = 105/245 (42%), Positives = 158/245 (63%)
Frame = +3
Query: 699 VKKASGKWRMCVDYTDLNMACPKDPYPLPSIDHLIDNASGYKTLSFMDAYSGYNQIKMDP 758
V K GK MCVDY DLN A PKD +PLP I+ L+DN + + SFMD +SGYNQIK+ P
Sbjct: 3 VLKEDGKV*MCVDYRDLN*ASPKDKFPLPHINVLVDNTTSFSQFSFMDGFSGYNQIKIAP 182
Query: 759 LDAPKTAFMTNQKNYHYRVMSFGLRNAGATFQRSMDTIFSNQIGRNLEVYIDDLVVKTSE 818
D KT F+T + Y+ MSFGL+N GAT+QR+M +F + + + +EVY+DD++VK+
Sbjct: 183 EDMEKTTFITLWGTFCYKAMSFGLKNVGATYQRAMVALF*DMMHKEIEVYMDDMIVKSRT 362
Query: 819 KQSHSVDLKEIFQQIRKFSMRLNPTKCTFGVQAGKFLGFLLTKKGIEANPDKCQAIINMR 878
++ H V+L+++F+++RK+ +RLNP KC F V++ K L F+ + +GIE + +K + I+ M
Sbjct: 363 EEEHLVNLRKLFRRLRKYRLRLNPAKCMFEVKSRKLLDFIDS*RGIEVDSNKVKVILEMA 542
Query: 879 NPCNIREVQQLTGRLAALSRFLSCAGDKAFAFFATIKKKEEFEWNQECDEAFGKIKQFLT 938
P ++VQ GRL + RF+S F + K + +W+ +C AF +IKQ L
Sbjct: 543 KPHTEKQVQGFLGRLNYIVRFIS*LIATCEPLFILLCKNQFVKWDHDC*VAFERIKQCLI 722
Query: 939 TPPIL 943
P +L
Sbjct: 723 NPHVL 737
>TC223727 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, partial (9%)
Length = 843
Score = 186 bits (471), Expect = 1e-46
Identities = 92/220 (41%), Positives = 131/220 (58%), Gaps = 1/220 (0%)
Frame = +1
Query: 1255 VAKNDEYAQLVRRRATKFVVIAGKLYKRGRASPLLRCLGEGETELVLLEVHEGVCGSHIG 1314
+A ND+ + +RR A F + LYKR LRC+ E ++ EVHEG G+H
Sbjct: 190 IADNDK--RTLRRLAAGFFMSGSILYKRNHDMKPLRCVDAREANHMIEEVHEGSFGTHAN 363
Query: 1315 GRSLAAKLLRAGYYWPRMAHDCCEFVKKCDKCQRFSDKKNAPANELTSVFSPWPFHKWGV 1374
G ++A K+LRAGYYW M DCC V+KC KCQ F+D NAP + L + SPWPF WG+
Sbjct: 364 GHAMARKILRAGYYWLTMESDCCVHVRKCHKCQAFADNVNAPPHPLNVMSSPWPFSMWGI 543
Query: 1375 DIVGPF-PQAPGQLKFLIVDVDYFTKWVEAEAVSKITAERVVKFYWKKIICHFGLPKYIV 1433
D++G P+A +F++V +DYFTKWVEA + + + VV+F K+IIC +GLP+ I+
Sbjct: 544 DVIGAIEPKASNGHRFILVAIDYFTKWVEAASYTDVMRGVVVRFIKKEIICRYGLPRKII 723
Query: 1434 TDNGTQFASSKVVNFCKQLGIETKFVSVIHPQANGQAESA 1473
TDNGT + + C++ I+ + P+ N E A
Sbjct: 724 TDNGTNLNNKMMGEICEEFKIQHHNPTPYRPKMN*AVEVA 843
>NP595172 polyprotein [Glycine max]
Length = 4659
Score = 179 bits (454), Expect = 9e-45
Identities = 118/435 (27%), Positives = 212/435 (48%), Gaps = 5/435 (1%)
Frame = +1
Query: 645 HHLAVRTSVKPVVQRKRKMGEEKRKAVDEEVKKLQEAHFICEIKYPTWLANTVLVKKASG 704
H + ++ PV R + ++ +++ ++++ I P L +LVKK G
Sbjct: 1759 HAIPLKQGSGPVKVRPYRYPHTQKDQIEKMIQEMLVQGIIQPSNSPFSLP-ILLVKKKDG 1935
Query: 705 KWRMCVDYTDLNMACPKDPYPLPSIDHLIDNASGYKTLSFMDAYSGYNQIKMDPLDAPKT 764
WR C DY LN KD +P+P++D L+D G + S +D SGY+QI + P D KT
Sbjct: 1936 SWRFCTDYRALNAITVKDSFPMPTVDELLDELHGAQYFSKLDLRSGYHQILVQPEDREKT 2115
Query: 765 AFMTNQKNYHYRVMSFGLRNAGATFQRSMDTIFSNQIGRNLEVYIDDLVVKTSEKQSHSV 824
AF T+ +Y + VM FGL NA ATFQ M+ IF + + + V+ DD+++ ++ + H
Sbjct: 2116 AFRTHHGHYEWLVMPFGLTNAPATFQCLMNKIFQFALRKFVLVFFDDILIYSASWKDHLK 2295
Query: 825 DLKEIFQQIRKFSMRLNPTKCTFGVQAGKFLGFLLTKKGIEANPDKCQAIINMRNPCNIR 884
L+ + Q +++ + +KC+FG +LG ++ G+ K QA+++ P N++
Sbjct: 2296 HLESVLQTLKQHQLFARLSKCSFGDTEVDYLGHKVSGLGVSMENTKVQAVLDWPTPNNVK 2475
Query: 885 EVQQLTGRLAALSRFLSCAGDKAFAFFATIKKKEEFEWNQECDEAFGKIKQFLTTPPILH 944
+++ G RF+ + A + +K+ F WN E + AF K+K+ +T P+L
Sbjct: 2476 QLRGFLGLTGYYRRFIKSYANIA-GPLTDLLQKDSFLWNNEAEAAFVKLKKAMTEAPVLS 2652
Query: 945 RPTKGAGLFLYLSVSENALSSVLVEESDEREKPIYFVSRVLKGAELRYQKIEKLALAVII 1004
P L S + +VL + PI + S+ L + + LA+
Sbjct: 2653 LPDFSQPFILETDASGIGVGAVL----GQNGHPIAYFSKKLAPRMQKQSAYTRELLAITE 2820
Query: 1005 TARKLRPYFQSHKVVIRTNY-PVKQILGKLDLAGRMLSWSVELSEYD--IQFAP-RNNIK 1060
K R Y +K +IRT+ +K ++ + +W + YD I++ P ++N
Sbjct: 2821 ALSKFRHYLLGNKFIIRTDQRSLKSLMDQSLQTPEQQAWLHKFLGYDFKIEYKPGKDNQA 3000
Query: 1061 SQVLAD-FVVEFTSP 1074
+ L+ F++ ++ P
Sbjct: 3001 ADALSRMFMLAWSEP 3045
Score = 108 bits (270), Expect = 2e-23
Identities = 132/500 (26%), Positives = 212/500 (42%), Gaps = 19/500 (3%)
Frame = +1
Query: 1148 RSDSQLMTNQISGEYQTKDQQLSKYLARVRKLAGDFQFFEAIYVPRESNSRADLLAKLAS 1207
R+D + + + + QT +QQ A + K G F+ Y P + N AD L+++
Sbjct: 2869 RTDQRSLKSLMDQSLQTPEQQ-----AWLHKFLG--YDFKIEYKPGKDNQAADALSRMFM 3027
Query: 1208 TKKPGNNRTVIQEVISAPSTDEKAVFELNQEPEGWMTPLLKFLTGSFVAKNDEYAQLVRR 1267
+ ++E+ + +D P LK L ++ D
Sbjct: 3028 LAWSEPHSIFLEELRARLISD----------------PHLKQLMETYKQGAD-------- 3135
Query: 1268 RATKFVVIAGKLYKRGRASPLLRCLGEGETELV---LLEVHEGVCGSHIGGRSLAAKLLR 1324
A+ + V G LY + R + E E+V L E H G H G A+L +
Sbjct: 3136 -ASHYTVREGLLYWKDRV------VIPAEEEIVNKILQEYHSSPIGGHAGITRTLARL-K 3291
Query: 1325 AGYYWPRMAHDCCEFVKKCDKCQRFSDKKNAPANELTSVFSPWPFHKW---GVDIVGPFP 1381
A +YWP+M D +++KC CQ+ PA L + P P W +D + P
Sbjct: 3292 AQFYWPKMQEDVKAYIQKCLICQQAKSNNTLPAGLLQPL--PIPQQVWEDVAMDFITGLP 3465
Query: 1382 QAPGQLKFLIVDVDYFTKW-----VEAEAVSKITAERVVKFYWKKIICHFGLPKYIVTDN 1436
+ G L ++V +D TK+ ++A+ SK+ AE + I+ G+P+ IV+D
Sbjct: 3466 NSFG-LSVIMVVIDRLTKYAHFIPLKADYNSKVVAEA----FMSHIVKLHGIPRSIVSDR 3630
Query: 1437 GTQFASSKVVNFCKQLGIETKFVSVIHPQANGQAESANKMIVNDIK-KKLEDAKGLWAEQ 1495
F S+ + K G S HPQ++GQ+E NK + ++ E KG W +
Sbjct: 3631 DRVFTSTFWQHLFKLQGTTLAMSSAYHPQSDGQSEVLNKCLEMYLRCFTYEHPKG-WVKA 3807
Query: 1496 LHEVLWSYHTTPHSTTGETPFTMVYGADAMLPVEIDTPTWRREHFSEESNEVGIRCTMDM 1555
L + Y+T H + G TPF +YG + PT R+ S + + +R +
Sbjct: 3808 LPWAEFWYNTAYHMSLGMTPFRALYGR--------EPPTLTRQACSID-DPAEVREQLTD 3960
Query: 1556 IDEVREAAHIREFAAKQRAARRYNSKVIPRSMKEGDLVL------KQVVAPTRIG-KLLP 1608
D + I A+Q R+ + K + S + GD VL +Q A R KL
Sbjct: 3961 RDALLAKLKINLTRAQQVMKRQADKKRLDVSFQIGDEVLVKLQPYRQHSAVLRKNQKLSM 4140
Query: 1609 SWKGPYRVKEKLQHGAYKLE 1628
+ GP++V K+ AYKLE
Sbjct: 4141 RYFGPFKVLAKIGDVAYKLE 4200
>NP334778 reverse transcriptase [Glycine max]
Length = 431
Score = 158 bits (400), Expect = 2e-38
Identities = 71/143 (49%), Positives = 101/143 (69%)
Frame = +3
Query: 707 RMCVDYTDLNMACPKDPYPLPSIDHLIDNASGYKTLSFMDAYSGYNQIKMDPLDAPKTAF 766
RMCVDY DLN A PKD +PLP ID L+ N + + SFMD +SGYNQIKM P D KT F
Sbjct: 3 RMCVDYRDLNRASPKDNFPLPHIDILMANMASFALFSFMDGFSGYNQIKMAPEDMEKTTF 182
Query: 767 MTNQKNYHYRVMSFGLRNAGATFQRSMDTIFSNQIGRNLEVYIDDLVVKTSEKQSHSVDL 826
+T + Y+VMSFGL+N GAT+ R+M +F + + + +E Y+D+++ K+ ++ H V+L
Sbjct: 183 ITLWGTFCYKVMSFGLKNFGATYHRAMVALFQDMMHKEIEAYVDEMIAKSRMEEEHLVNL 362
Query: 827 KEIFQQIRKFSMRLNPTKCTFGV 849
+ +F Q+RK+ +RLNP KC FG+
Sbjct: 363 QNLFGQLRKYRLRLNPRKCVFGL 431
>NP395547 reverse transcriptase [Glycine max]
Length = 762
Score = 151 bits (382), Expect = 2e-36
Identities = 88/248 (35%), Positives = 127/248 (50%), Gaps = 18/248 (7%)
Frame = +1
Query: 671 VDEEVKKLQEAHFICEIKYPTWLANTVLVKKASG------------------KWRMCVDY 712
V +EV KL EA I I +W++ +V K G +WRMC+DY
Sbjct: 1 VRKEVFKLLEAGLIYPISDSSWVSPVQVVPKKGGMTVVKNDRNELIPTRRVTRWRMCIDY 180
Query: 713 TDLNMACPKDPYPLPSIDHLIDNASGYKTLSFMDAYSGYNQIKMDPLDAPKTAFMTNQKN 772
LN A KD YPLP +D ++ + F+D YSGYNQI +DP D KTAF
Sbjct: 181 RKLNEATRKDHYPLPFMDQMLKRLARQSFYRFLDGYSGYNQIAVDPQDQEKTAFTCPFSV 360
Query: 773 YHYRVMSFGLRNAGATFQRSMDTIFSNQIGRNLEVYIDDLVVKTSEKQSHSVDLKEIFQQ 832
+ YR M FGL NA TFQR M IF + + + +EV++DD + + +L+++ Q+
Sbjct: 361 FAYRRMPFGLCNASTTFQRCMMAIFDDMVEKCIEVFMDDFSFFGASFGNCLANLEKVLQR 540
Query: 833 IRKFSMRLNPTKCTFGVQAGKFLGFLLTKKGIEANPDKCQAIINMRNPCNIREVQQLTGR 892
K ++ LN KC F VQ G LG ++K+GIE +K I + P N++ + G
Sbjct: 541 CEKSNLVLNWEKCHFMVQEGIVLGHKISKRGIEVVKEKLDVIDKLPPPVNVKGIHSFLGH 720
Query: 893 LAALSRFL 900
+ RF+
Sbjct: 721 VGFYRRFI 744
>TC233837 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, partial (6%)
Length = 402
Score = 145 bits (366), Expect = 1e-34
Identities = 64/132 (48%), Positives = 100/132 (75%)
Frame = +2
Query: 743 SFMDAYSGYNQIKMDPLDAPKTAFMTNQKNYHYRVMSFGLRNAGATFQRSMDTIFSNQIG 802
SFMD +SGYNQI M D KT F+T + YRVM+FGL+N GAT+QR+M +F + +
Sbjct: 5 SFMDGFSGYNQI*MAREDVEKTTFVTLWGTFSYRVMAFGLKNTGATYQRAMVALFHDMMH 184
Query: 803 RNLEVYIDDLVVKTSEKQSHSVDLKEIFQQIRKFSMRLNPTKCTFGVQAGKFLGFLLTKK 862
+ +EVY+DD++ K+ + H V+L ++F +++K+ ++LNPTKCTFGV++GK LGF++++K
Sbjct: 185 KEIEVYVDDMIAKSRTETEHLVNLCKLFGRLQKYQLKLNPTKCTFGVKSGKLLGFIVSQK 364
Query: 863 GIEANPDKCQAI 874
GIE +P+K +A+
Sbjct: 365 GIEIDPEKVKAL 400
>NP395548 reverse transcriptase [Glycine max]
Length = 762
Score = 139 bits (350), Expect = 1e-32
Identities = 81/248 (32%), Positives = 127/248 (50%), Gaps = 18/248 (7%)
Frame = +1
Query: 671 VDEEVKKLQEAHFICEIKYPTWLANTVLVKKASG------------------KWRMCVDY 712
V +EV KL E I I W++ ++V K G W++C+DY
Sbjct: 1 VRKEVLKLLEVGLIYPISDSAWVSPVLVVSKKEGMTVIRNEKNDLIPTRTVTSWKLCIDY 180
Query: 713 TDLNMACPKDPYPLPSIDHLIDNASGYKTLSFMDAYSGYNQIKMDPLDAPKTAFMTNQKN 772
LN A KD +PLP +D +++ +G+ F+DAY GYNQI +DP D K AF
Sbjct: 181 RKLNEATRKDHFPLPFMDQMLERLAGHAYYCFLDAYFGYNQIVVDPKDQEKMAFTCPFGV 360
Query: 773 YHYRVMSFGLRNAGATFQRSMDTIFSNQIGRNLEVYIDDLVVKTSEKQSHSVDLKEIFQQ 832
+ YR + FGL NA TFQ M IF++ + +++EV++DD V +S L+ + Q+
Sbjct: 361 FAYRRIPFGLCNAPTTFQMCMLAIFADIVEKSIEVFMDDFSVFVPSLESCLKKLEMVLQR 540
Query: 833 IRKFSMRLNPTKCTFGVQAGKFLGFLLTKKGIEANPDKCQAIINMRNPCNIREVQQLTGR 892
+ ++ LN KC F V+ G LG ++ +GIE + K I + P N++ ++ G+
Sbjct: 541 CVETNLVLNWEKCHFMVREGIVLGHKISTRGIEVDQTKIDVIEKLPPPSNVKGIRSFLGQ 720
Query: 893 LAALSRFL 900
RF+
Sbjct: 721 ARFYRRFI 744
>TC211815
Length = 704
Score = 80.5 bits (197), Expect(2) = 9e-30
Identities = 48/133 (36%), Positives = 75/133 (56%), Gaps = 2/133 (1%)
Frame = +2
Query: 1507 PHSTTGETPFTMVYGADAMLPVEIDTPTWRREHFSEESNEVGIRCTMDMIDEVREAAHIR 1566
P STT ETPF ++YG MLP+E+ R +F+E N+ ++ +D+I +VRE I
Sbjct: 227 PQSTTHETPF*LIYGISVMLPIEVGEVFL*RHYFAEV*NKEALQIDLDLIKQVREDTVIM 406
Query: 1567 EFAAKQRAARRYNSKVIPRSMKEGDLV--LKQVVAPTRIGKLLPSWKGPYRVKEKLQHGA 1624
A KQR R +NSK+ G + +++ + K + +GP++++ ++GA
Sbjct: 407 T*AFKQRMTRCFNSKLPSTV*GRGPSMEGIQRSLEVLVRSKFTTN*EGPFKIRHNSKNGA 586
Query: 1625 YKLEELSGNPVPR 1637
YKLEELSG V R
Sbjct: 587 YKLEELSGKVVLR 625
Score = 70.1 bits (170), Expect(2) = 9e-30
Identities = 33/67 (49%), Positives = 44/67 (65%)
Frame = +3
Query: 1435 DNGTQFASSKVVNFCKQLGIETKFVSVIHPQANGQAESANKMIVNDIKKKLEDAKGLWAE 1494
DNG QF + K+ F L I+ + SV HPQ N +AE+ANK+I+ D+KK L+ A G W E
Sbjct: 3 DNGLQFTNRKLNEFPSGLNIKHRVTSVKHPQTNRRAEAANKVILGDLKKLLDGANGRWVE 182
Query: 1495 QLHEVLW 1501
L E+LW
Sbjct: 183 DLVEILW 203
>BI316922
Length = 405
Score = 125 bits (314), Expect = 2e-28
Identities = 55/134 (41%), Positives = 86/134 (64%)
Frame = +3
Query: 1303 EVHEGVCGSHIGGRSLAAKLLRAGYYWPRMAHDCCEFVKKCDKCQRFSDKKNAPANELTS 1362
E+H G+CG H + + ++LR GYY M C E+VKKC++C +F + + EL +
Sbjct: 3 EMHRGICGMHSKSQLMTTRVLRVGYY**TMRKYCTEYVKKCEEC*KFGNISHLLVEELHN 182
Query: 1363 VFSPWPFHKWGVDIVGPFPQAPGQLKFLIVDVDYFTKWVEAEAVSKITAERVVKFYWKKI 1422
+ +PWPF GVDI+ PFP + Q+K+L+V +D FTKW+E E ++ I+ V KF + I
Sbjct: 183 IVAPWPFAI*GVDILRPFPLSKRQVKYLLVGIDQFTKWIETEHIAIISIANVRKFV*RNI 362
Query: 1423 ICHFGLPKYIVTDN 1436
+C FG+P +++DN
Sbjct: 363 VC*FGIPNTLISDN 404
>TC212032 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, partial (3%)
Length = 803
Score = 90.5 bits (223), Expect(2) = 3e-24
Identities = 64/197 (32%), Positives = 95/197 (47%), Gaps = 4/197 (2%)
Frame = +2
Query: 1137 AQEMGAKNLRARSDSQLMTNQISGEYQTKDQQLSKYLARVRKLAGDFQFFEAIYVPRESN 1196
A + K L+ DS L+ +Q+ GE +T+D L Y A +++LAG F +V E N
Sbjct: 215 AIDSNVKLLKVYGDSALVIHQLRGECETRDPNLIPYQAYIKELAGFFDEISFHHVA*EEN 394
Query: 1197 SRADLLAKLASTKK--PGNNRTVIQEVISAPSTDEKAVFELNQEPEGWMTPLLKFLTGSF 1254
AD LA L S + P + I E + E ++ + W + +++
Sbjct: 395 QMADALATLVSMFQLTPHGDLPYI-EFRCRGRPAHCCLVEEERDGKPWYFDIKRYVESKE 571
Query: 1255 --VAKNDEYAQLVRRRATKFVVIAGKLYKRGRASPLLRCLGEGETELVLLEVHEGVCGSH 1312
+ +D + RR A F + LYKR LL C+ E E +L EVHEG G+H
Sbjct: 572 YPLEASDNDKRRKRRLAAGFFMSGSILYKRNHDMVLLHCVNGKEVENMLGEVHEGSFGTH 751
Query: 1313 IGGRSLAAKLLRAGYYW 1329
G ++A K+LRAGYYW
Sbjct: 752 SNGHAMARKILRAGYYW 802
Score = 41.6 bits (96), Expect(2) = 3e-24
Identities = 19/47 (40%), Positives = 27/47 (57%)
Frame = +1
Query: 1083 WLLSVDGSSNIKGSGAGIILEGPGDLLIEQSLKFDFKASNNQAEYEA 1129
W++ D +SN+ G G G IL P + I + + F +NN AEYEA
Sbjct: 52 WIVWFDRASNVLGHGVGAILVSPDNQCIPFTTRLGFDCTNNMAEYEA 192
>BG725601 similar to PIR|H86337|H86 protein F5M15.26 [imported] - Arabidopsis
thaliana, partial (1%)
Length = 285
Score = 105 bits (261), Expect = 2e-22
Identities = 52/90 (57%), Positives = 64/90 (70%)
Frame = -3
Query: 645 HHLAVRTSVKPVVQRKRKMGEEKRKAVDEEVKKLQEAHFICEIKYPTWLANTVLVKKASG 704
H LA+ VK V QRKRK+ EE+ + V +EV KL A FI +I Y T L + V+VKK +G
Sbjct: 277 HKLAICNDVKLVTQRKRKIREERCQTV*QEVVKLAIASFIRDINYST*LFSVVMVKKPNG 98
Query: 705 KWRMCVDYTDLNMACPKDPYPLPSIDHLID 734
KWR+C DY DLN ACPKD YPLP+IDH+ D
Sbjct: 97 KWRICTDYIDLN*ACPKDAYPLPNIDHMTD 8
>TC224482 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, partial (6%)
Length = 669
Score = 84.7 bits (208), Expect = 3e-16
Identities = 59/171 (34%), Positives = 87/171 (50%), Gaps = 5/171 (2%)
Frame = +1
Query: 1471 ESANKMIVNDIKKKLEDAKGLWAEQLHEVLWSYHTTPHSTTGETPFTMVYGADAMLPVEI 1530
E+ANK I I+K K W E L L Y T+ ++TG TPF++VYG +A+LP E+
Sbjct: 1 EAANKNIKKIIQKMTVSYKD-WHEMLPFALHGYRTSVRTSTGATPFSLVYGMEAVLPFEV 177
Query: 1531 DTPTWR--REHFSEESNEVGIRC-TMDMIDEVREAAHIREFAAKQRAARRYNSKVIPRSM 1587
+ P+ R E +ES R +++I+ R A +QR ++ KV R
Sbjct: 178 EVPSLRILAESGLKESEWAQTRYDQLNLIEGKRLTAMSHGRLYQQRMKSAFDKKVCLRKF 357
Query: 1588 KEGDLVLKQV--VAPTRIGKLLPSWKGPYRVKEKLQHGAYKLEELSGNPVP 1636
EGDLVLK++ GK P+++GP+ VK GA L + G +P
Sbjct: 358 HEGDLVLKKMSHAVKDHRGKWAPNYEGPFVVKRAFSGGALVLTNMDGEELP 510
>BI321666
Length = 430
Score = 79.3 bits (194), Expect = 1e-14
Identities = 40/131 (30%), Positives = 69/131 (52%)
Frame = +2
Query: 1318 LAAKLLRAGYYWPRMAHDCCEFVKKCDKCQRFSDKKNAPANELTSVFSPWPFHKWGVDIV 1377
++ +L++ +Y P + D + C+KCQR L ++ F WG+D V
Sbjct: 2 ISTNVLQSRFYLPSIFKDAYVHAQSCNKCQRTRSVSKRNELPLHTILEVEIFDYWGIDFV 181
Query: 1378 GPFPQAPGQLKFLIVDVDYFTKWVEAEAVSKITAERVVKFYWKKIICHFGLPKYIVTDNG 1437
GPFP + ++++V VDY +KWVEA A K A+ V+KF K+I G+P ++ + G
Sbjct: 182 GPFPPSFSN-EYILVVVDYVSKWVEAVACQKSDAKIVIKFLKKQIFSRLGVPWVLIDNGG 358
Query: 1438 TQFASSKVVNF 1448
+ ++ + F
Sbjct: 359 SHLCNA*LARF 391
>AW184779
Length = 432
Score = 77.0 bits (188), Expect = 6e-14
Identities = 36/69 (52%), Positives = 43/69 (62%)
Frame = +1
Query: 1279 LYKRGRASPLLRCLGEGETELVLLEVHEGVCGSHIGGRSLAAKLLRAGYYWPRMAHDCCE 1338
LYKR LLRC+ E E +L+EVHEG G+H ++A K+LR GYYW M DCC
Sbjct: 16 LYKRNHDMVLLRCVDAREAEQMLVEVHEGSFGTHANIHAMAQKILRVGYYWLTMESDCCI 195
Query: 1339 FVKKCDKCQ 1347
V KC KCQ
Sbjct: 196 HVWKCHKCQ 222
Score = 50.1 bits (118), Expect = 8e-06
Identities = 28/100 (28%), Positives = 45/100 (45%), Gaps = 10/100 (10%)
Frame = +3
Query: 1327 YYWPRMAHDCCEFVKKCDKCQRFSDKKNAPANELTSVFSPWPF---------HKWGVDIV 1377
+Y R+ H C E P + +P P+ H WG+D++
Sbjct: 171 HYGERLLHPCVEM-------------P*VPVRPSLIMLTPHPYL*MSWQHLGHMWGIDVI 311
Query: 1378 GPF-PQAPGQLKFLIVDVDYFTKWVEAEAVSKITAERVVK 1416
G P+A F++V +DYFTKWVEA + + +T V++
Sbjct: 312 GAIEPKASNGHHFILVAIDYFTKWVEAVSYASVTRSVVIR 431
>TC219643 weakly similar to UP|Q6WAY7 (Q6WAY7) Gag/pol polyprotein (Fragment),
partial (8%)
Length = 1320
Score = 75.9 bits (185), Expect = 1e-13
Identities = 38/94 (40%), Positives = 54/94 (57%)
Frame = +3
Query: 604 KIGTSLSGLEEEILVQLLRENVDLFAWAPSDMPGIDIGVACHHLAVRTSVKPVVQRKRKM 663
KIGT ++ E L+ LLR+ D+FAW+ DMPG+ + H L + PV Q+ R+M
Sbjct: 1029 KIGTGITAPIREELIILLRDYQDIFAWSYQDMPGLSSDIVQHRLPLNPECSPVKQKLRRM 1208
Query: 664 GEEKRKAVDEEVKKLQEAHFICEIKYPTWLANTV 697
E + EEVKK +A F+ +YP W+AN V
Sbjct: 1209 KPETSLKIKEEVKK*FDAGFLAVARYPKWVANIV 1310
>BQ628592
Length = 423
Score = 52.4 bits (124), Expect(2) = 9e-13
Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 2/72 (2%)
Frame = -1
Query: 914 IKKKEEFEWNQECDEAFGKIKQFLTTPPILHRPTKGAGLFLYLSVSENALSSVLVEESD- 972
+ K + WN EAF KIKQ L P +L P G LY+++ + ++ VLV+ D
Sbjct: 423 LPKNQAILWNSNYQEAFEKIKQSLANPSVLMPPVTGRPFLLYMTMLDESMGCVLVQHDDS 244
Query: 973 -EREKPIYFVSR 983
++E+ IY++S+
Sbjct: 243 GKKEQAIYYLSK 208
Score = 40.8 bits (94), Expect(2) = 9e-13
Identities = 22/64 (34%), Positives = 34/64 (52%), Gaps = 1/64 (1%)
Frame = -3
Query: 989 ELRYQKIEKLALAVIITARKLRPYFQSHKV-VIRTNYPVKQILGKLDLAGRMLSWSVELS 1047
++ Y +E+ ++ + +LR Y SH +I PVK I K L GR+ W V LS
Sbjct: 193 KMNYSMLERTCCTLVWASHRLRQYMLSHTTWLISKMDPVKYIFEKPALTGRIARWQVLLS 14
Query: 1048 EYDI 1051
E++I
Sbjct: 13 EFNI 2
>BE801213 weakly similar to GP|6691193|gb| F7F22.17 {Arabidopsis thaliana},
partial (3%)
Length = 416
Score = 51.6 bits (122), Expect(2) = 8e-12
Identities = 26/75 (34%), Positives = 42/75 (55%)
Frame = +3
Query: 1411 AERVVKFYWKKIICHFGLPKYIVTDNGTQFASSKVVNFCKQLGIETKFVSVIHPQANGQA 1470
A+ V+KF K I FG+P+ +++D G+ F S++ K + K + HPQ NGQA
Sbjct: 9 AKIVIKFLKKNIFSRFGMPRILISDGGSHFYYSQLNKVLKHDSVRHKVETSYHPQTNGQA 188
Query: 1471 ESANKMIVNDIKKKL 1485
+ +N N +KK+
Sbjct: 189 KVSNIHKENS*EKKM 233
Score = 38.5 bits (88), Expect(2) = 8e-12
Identities = 17/49 (34%), Positives = 27/49 (54%)
Frame = +2
Query: 1482 KKKLEDAKGLWAEQLHEVLWSYHTTPHSTTGETPFTMVYGADAMLPVEI 1530
+K + ++ W+ +L + LW+ T + G TPF MVY LPVE+
Sbjct: 224 EKNVASSRKDWSSKLEDALWACKTAKKTPIGLTPFQMVYRKACHLPVEL 370
>BE802896
Length = 416
Score = 65.1 bits (157), Expect = 2e-10
Identities = 38/130 (29%), Positives = 60/130 (45%)
Frame = -2
Query: 891 GRLAALSRFLSCAGDKAFAFFATIKKKEEFEWNQECDEAFGKIKQFLTTPPILHRPTKGA 950
G RF+ A ++K+ EF++N +C AF +K+ L T PI+ P A
Sbjct: 406 GHAGFYRRFIRDFRKVALPLSNLLQKEVEFDFNDKCK*AFDCLKRALITTPIIQAPDWTA 227
Query: 951 GLFLYLSVSENALSSVLVEESDEREKPIYFVSRVLKGAELRYQKIEKLALAVIITARKLR 1010
L S AL VL ++ D+ + IY+ SR L A+ Y EK LA++ K
Sbjct: 226 PFELMCDASNYALGVVLAQKIDKLPRVIYYSSRTLDAAQANYTTTEKELLAIVFALEKFH 47
Query: 1011 PYFQSHKVVI 1020
Y ++++
Sbjct: 46 SYLLGTRIIV 17
>BE660092 weakly similar to GP|9884624|dbj retroelement pol polyprotein-like
{Arabidopsis thaliana}, partial (13%)
Length = 378
Score = 62.4 bits (150), Expect = 2e-09
Identities = 33/118 (27%), Positives = 65/118 (54%), Gaps = 3/118 (2%)
Frame = -3
Query: 1450 KQLGIETKFVSVIHPQANGQAESANKMIVNDIKKKLEDAKGLWAEQLHEVLWSYHTTPHS 1509
K+ G+ + + HPQ NGQAE +N+ I ++K ++ ++ W+ +L + LW++ T +
Sbjct: 361 KKYGVVHRVSTPYHPQTNGQAEISNREIKRILEKIVQPSRKDWSTRLDDALWAHRTAYKA 182
Query: 1510 TTGETPFTMVYGADAMLPVEIDTPTW---RREHFSEESNEVGIRCTMDMIDEVREAAH 1564
G +P+ +V+G LPVEI+ + + +FS + + + +DE+R A+
Sbjct: 181 PIGMSPYRVVFGKACHLPVEIEHKAYWAVKTCNFSMDQAGEERKLQLSELDEIRLEAY 8
>TC220664 weakly similar to UP|Q84TE0 (Q84TE0) At5g51080, partial (31%)
Length = 724
Score = 60.8 bits (146), Expect = 5e-09
Identities = 34/87 (39%), Positives = 49/87 (56%)
Frame = +1
Query: 1120 ASNNQAEYEALIAGMLLAQEMGAKNLRARSDSQLMTNQISGEYQTKDQQLSKYLARVRKL 1179
A+NN AEY A+I GM A + G +R + DS+L+ QI G ++ K++ LS ++L
Sbjct: 61 ATNNAAEYRAMILGMKYALKKGFTGIRIQGDSKLVCMQIDGSWKVKNENLSTLYNVAKEL 240
Query: 1180 AGDFQFFEAIYVPRESNSRADLLAKLA 1206
F F+ +V R NS AD A LA
Sbjct: 241 KDKFSSFQISHVLRNFNSDADAQANLA 321
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.318 0.135 0.399
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,643,682
Number of Sequences: 63676
Number of extensions: 948009
Number of successful extensions: 4711
Number of sequences better than 10.0: 74
Number of HSP's better than 10.0 without gapping: 4611
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4697
length of query: 1638
length of database: 12,639,632
effective HSP length: 110
effective length of query: 1528
effective length of database: 5,635,272
effective search space: 8610695616
effective search space used: 8610695616
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 66 (30.0 bits)
Medicago: description of AC141323.18