BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC141323.10 + phase: 0 /pseudo
(337 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BI970781 similar to GP|17381240|gb AT5g09790/F17I14_20 {Arabidop... 267 1e-75
TC223468 similar to GB|AAS92337.1|46402470|BT012421 At5g24330 {A... 137 3e-41
BI944385 similar to GP|17381240|gb| AT5g09790/F17I14_20 {Arabido... 122 7e-35
TC234112 similar to UP|Q8VZJ1 (Q8VZJ1) AT5g09790/F17I14_20, part... 93 1e-19
TC229499 61 8e-10
TC223375 weakly similar to UP|Q9Y3Q5 (Q9Y3Q5) PLU-1 protein, par... 56 2e-08
TC229063 similar to GB|AAO64869.1|29028980|BT005934 At2g19260 {A... 54 8e-08
BI786400 49 4e-06
AF050461 44 1e-04
TC229702 42 4e-04
AW396084 weakly similar to GP|17381240|gb| AT5g09790/F17I14_20 {... 37 0.001
TC222777 weakly similar to GB|AAP68251.1|31711790|BT008812 At2g3... 39 0.003
AW756181 39 0.004
BG881714 38 0.007
TC219399 weakly similar to GB|AAP68251.1|31711790|BT008812 At2g3... 37 0.010
TC221711 weakly similar to UP|Q84XG3 (Q84XG3) SET domain protein... 35 0.048
TC229811 similar to UP|Q9FIH7 (Q9FIH7) Similarity to SET-domain ... 35 0.063
TC217391 similar to UP|Q6T283 (Q6T283) Predicted protein, partia... 34 0.082
AW755354 34 0.11
TC217528 similar to GB|AAO64916.1|29029074|BT005981 At5g53430 {A... 33 0.24
>BI970781 similar to GP|17381240|gb AT5g09790/F17I14_20 {Arabidopsis
thaliana}, partial (39%)
Length = 753
Score = 267 bits (683), Expect(3) = 1e-75
Identities = 127/144 (88%), Positives = 138/144 (95%)
Frame = -2
Query: 194 CRSMMERGECPPLMVVYDPVEGFTIEADKSIKDLTIITEYVGDVDFLKNREHDDGDSIMT 253
C S+MERGE PLMVV+DP+EGFT+EAD+SIKDLTIITEYVGDVDFLKNRE+DDGDSIMT
Sbjct: 635 CASVMERGEXXPLMVVFDPLEGFTVEADRSIKDLTIITEYVGDVDFLKNRENDDGDSIMT 456
Query: 254 LLSASNPSQSLVICPDKRSNIARFINGINNHTPEGKKKQNLKCVRYNVDGECRVLLIANR 313
LLSAS+PS++LVICPDKRSNIARFINGINNHTPEGKKKQNLKCVR++V GECRVLLIANR
Sbjct: 455 LLSASDPSRTLVICPDKRSNIARFINGINNHTPEGKKKQNLKCVRFDVGGECRVLLIANR 276
Query: 314 DIAKGERLYYDYNGLEHEYPTEHF 337
DI KGERLYYDYNG EHEYPTEHF
Sbjct: 275 DITKGERLYYDYNGDEHEYPTEHF 204
Score = 30.0 bits (66), Expect(3) = 1e-75
Identities = 13/17 (76%), Positives = 14/17 (81%)
Frame = -1
Query: 179 GNAVLSKEDTETLNLCR 195
G V SKEDTETLNLC+
Sbjct: 678 GMQVXSKEDTETLNLCK 628
Score = 25.0 bits (53), Expect(3) = 1e-75
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = -3
Query: 155 VQ**AYVYAWNGAKGC*FSCS*TWGNA 181
VQ AY++AW+G K SCS* NA
Sbjct: 751 VQQSAYLHAWDGXKVRXSSCS*ARWNA 671
>TC223468 similar to GB|AAS92337.1|46402470|BT012421 At5g24330 {Arabidopsis
thaliana;} , partial (33%)
Length = 507
Score = 137 bits (346), Expect(2) = 3e-41
Identities = 68/102 (66%), Positives = 76/102 (73%), Gaps = 1/102 (0%)
Frame = +2
Query: 1 MVSPLRRRRIPAPKKQSTTFNNNDDDVVCQKCNSGKSPTKLLLCDNCDNGYHLFCLTPIL 60
M S L RRR APK ST +DDV C++C G SP+KL+LCD CD GYHLFCL PIL
Sbjct: 23 MASSLGRRRTHAPKASSTL----NDDVSCEECGGGHSPSKLILCDKCDRGYHLFCLRPIL 190
Query: 61 PSVPKSSWFCPSCS-HNPKIPKFPLVQTKIIDFFKIQRTSDA 101
PSVPK SWFCPSCS H PK FPLVQTKIIDFF+IQR+ +A
Sbjct: 191 PSVPKGSWFCPSCSNHKPK--SFPLVQTKIIDFFRIQRSPEA 310
Score = 48.9 bits (115), Expect(2) = 3e-41
Identities = 29/59 (49%), Positives = 40/59 (67%)
Frame = +1
Query: 108 EEEKAE**LGCFKKEKKVVGICAK**FEEEIRTDGVVGDRVDSY*NRVQ**AYVYAWNG 166
EE KA LG ++E++ VG+ A+* + +I TDGV GD VD *N VQ AY++AW+G
Sbjct: 331 EEAKAGWGLGGIEEEEEAVGVRAE*GSQ*KIGTDGVAGDGVDHN*NGVQQSAYLHAWDG 507
>BI944385 similar to GP|17381240|gb| AT5g09790/F17I14_20 {Arabidopsis
thaliana}, partial (23%)
Length = 394
Score = 122 bits (306), Expect(2) = 7e-35
Identities = 58/72 (80%), Positives = 67/72 (92%)
Frame = +2
Query: 248 GDSIMTLLSASNPSQSLVICPDKRSNIARFINGINNHTPEGKKKQNLKCVRYNVDGECRV 307
GDSIMTLLSAS+PS++LVICPDKRSNIARFINGINNHTPEGKKKQNLKCVR++V GECRV
Sbjct: 143 GDSIMTLLSASDPSRTLVICPDKRSNIARFINGINNHTPEGKKKQNLKCVRFDVGGECRV 322
Query: 308 LLIANRDIAKGE 319
LL+A + +G+
Sbjct: 323 LLMAIEILQRGK 358
Score = 42.7 bits (99), Expect(2) = 7e-35
Identities = 18/20 (90%), Positives = 18/20 (90%)
Frame = +1
Query: 312 NRDIAKGERLYYDYNGLEHE 331
NRDI KGERLYYDYNG EHE
Sbjct: 334 NRDITKGERLYYDYNGDEHE 393
>TC234112 similar to UP|Q8VZJ1 (Q8VZJ1) AT5g09790/F17I14_20, partial (14%)
Length = 581
Score = 93.2 bits (230), Expect = 1e-19
Identities = 40/51 (78%), Positives = 46/51 (89%)
Frame = +2
Query: 287 EGKKKQNLKCVRYNVDGECRVLLIANRDIAKGERLYYDYNGLEHEYPTEHF 337
EG+KKQN KCVRYNV+GECRV L+A RDI+KGERLYYDYNG E++YPT HF
Sbjct: 125 EGRKKQNCKCVRYNVNGECRVFLVAIRDISKGERLYYDYNGHEYQYPTHHF 277
>TC229499
Length = 915
Score = 60.8 bits (146), Expect = 8e-10
Identities = 21/46 (45%), Positives = 30/46 (64%)
Frame = +1
Query: 28 VCQKCNSGKSPTKLLLCDNCDNGYHLFCLTPILPSVPKSSWFCPSC 73
+CQ C + K K++LCD CD+ YH++C+ P S+PK WFC C
Sbjct: 349 ICQVCLTDKDDNKIVLCDACDHAYHVYCMKPPQNSIPKGKWFCIKC 486
Score = 29.6 bits (65), Expect = 2.0
Identities = 17/60 (28%), Positives = 27/60 (44%), Gaps = 3/60 (5%)
Frame = +1
Query: 17 STTFNNNDDDVVCQKCNSGKSPTKLLLCDNC---DNGYHLFCLTPILPSVPKSSWFCPSC 73
ST N+ D +C+ G+ K+ +C + YH+ CL+ W+CPSC
Sbjct: 178 STDRRNSSDCKICKMAVDGE---KVKICGHSFCPSKYYHVSCLSSKQLKSYGHCWYCPSC 348
>TC223375 weakly similar to UP|Q9Y3Q5 (Q9Y3Q5) PLU-1 protein, partial (3%)
Length = 690
Score = 56.2 bits (134), Expect = 2e-08
Identities = 17/45 (37%), Positives = 30/45 (65%)
Frame = +3
Query: 29 CQKCNSGKSPTKLLLCDNCDNGYHLFCLTPILPSVPKSSWFCPSC 73
C+ C + + +++LCD CD+ YH++C+ P S+P+ +WFC C
Sbjct: 3 CRVCLTDQDDDRIVLCDGCDHAYHIYCMKPPRTSIPRGNWFCRKC 137
>TC229063 similar to GB|AAO64869.1|29028980|BT005934 At2g19260 {Arabidopsis
thaliana;} , partial (10%)
Length = 1656
Score = 54.3 bits (129), Expect = 8e-08
Identities = 23/62 (37%), Positives = 32/62 (51%)
Frame = +1
Query: 12 APKKQSTTFNNNDDDVVCQKCNSGKSPTKLLLCDNCDNGYHLFCLTPILPSVPKSSWFCP 71
A + + T NN C+ C + +LLCD+C++ YHL C P L +P WFC
Sbjct: 658 ASGEDAVTTGNNCCSRSCKICGDLDNSLNMLLCDHCEDAYHLSCYNPRLKKLPIDEWFCH 837
Query: 72 SC 73
SC
Sbjct: 838 SC 843
>BI786400
Length = 367
Score = 48.5 bits (114), Expect = 4e-06
Identities = 26/66 (39%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Frame = +3
Query: 24 DDDVVCQKCNSGKSPTKLLLCDNCDNGYHLFCLTPILPSVPKSSWFCPSCS----HNPKI 79
D D VC C SP++ L C C +HL CL S+ S W CP CS H+P
Sbjct: 15 DSDGVCMLCKLKPSPSQTLSCGTCATPWHLPCLPSPPLSLSDSHWDCPDCSDTFCHHPVA 194
Query: 80 PKFPLV 85
P LV
Sbjct: 195PTAHLV 212
>AF050461
Length = 913
Score = 43.9 bits (102), Expect = 1e-04
Identities = 22/72 (30%), Positives = 32/72 (43%), Gaps = 2/72 (2%)
Frame = +1
Query: 8 RRIPAPKKQSTTFNNNDDDV-VCQKCNSGKSPTKLLLCDNCDNGY-HLFCLTPILPSVPK 65
R P + +S + + DV VC C L +C C +G H +C+ +L VP+
Sbjct: 697 RAEPQSEDESDESDVVEHDVKVCDICGDAGREDLLAICSRCSDGAEHTYCMREMLEKVPE 876
Query: 66 SSWFCPSCSHNP 77
W C C NP
Sbjct: 877 GDWLCEECK*NP 912
>TC229702
Length = 449
Score = 42.0 bits (97), Expect = 4e-04
Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 7/55 (12%)
Frame = +2
Query: 28 VCQKCNSGKS--PTKLLLCDNCDNGYHLFCL----TPILPSVPKSSWFCP-SCSH 75
+C + N KS P +++CD C+ YH+ CL L +P+ +WFC +CSH
Sbjct: 56 LCSRPNFSKSFGPRTVIICDQCEKEYHVGCLKEHNMENLEKLPEGNWFCSGNCSH 220
>AW396084 weakly similar to GP|17381240|gb| AT5g09790/F17I14_20 {Arabidopsis
thaliana}, partial (6%)
Length = 433
Score = 37.4 bits (85), Expect(2) = 0.001
Identities = 19/37 (51%), Positives = 23/37 (61%)
Frame = +2
Query: 183 LSKEDTETLNLCRSMMERGECPPLMVVYDPVEGFTIE 219
LSKED ETL C ++ +RGE PP MV EG +E
Sbjct: 206 LSKEDMETLEQCIALSKRGEFPPFMVFMIHREGTHLE 316
Score = 21.9 bits (45), Expect(2) = 0.001
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = +1
Query: 216 FTIEADKSIKDLT 228
+T+EAD IKD+T
Sbjct: 394 YTVEADDLIKDMT 432
>TC222777 weakly similar to GB|AAP68251.1|31711790|BT008812 At2g36720
{Arabidopsis thaliana;} , partial (26%)
Length = 1071
Score = 38.9 bits (89), Expect = 0.003
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 7/51 (13%)
Frame = +1
Query: 27 VVCQKCN---SGKSPTKLLLCDNCDNGYHLFCL----TPILPSVPKSSWFC 70
V+C+ + SG P +++CD C+ YH+ CL L +P+ WFC
Sbjct: 76 VLCRSSDFSRSGFGPRTIIICDQCEKEYHVGCLRDHKMAYLKELPEGDWFC 228
>AW756181
Length = 435
Score = 38.5 bits (88), Expect = 0.004
Identities = 17/52 (32%), Positives = 25/52 (47%), Gaps = 1/52 (1%)
Frame = +2
Query: 24 DDDVVCQKCNSGKSPTKLLLCDNCDNGYHLFCLTPILPSVPKSS-WFCPSCS 74
D + C C + LLC CD +H+ CL P++ ++ W CP CS
Sbjct: 32 DSEGACMVCKGLPGQEERLLCVTCDTPWHVPCLFAPPPTLSATARWLCPDCS 187
>BG881714
Length = 182
Score = 37.7 bits (86), Expect = 0.007
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = +1
Query: 32 CNSGKSPTKLLLCDNCDNGYHLFCLTPILPSVPKSSWFCPSCS 74
C++G LLLCD CD H +C+ + +V WFC C+
Sbjct: 7 CHAGTDEHLLLLCDLCDTASHTYCV-GLGYTVSDGDWFCHDCA 132
>TC219399 weakly similar to GB|AAP68251.1|31711790|BT008812 At2g36720
{Arabidopsis thaliana;} , partial (29%)
Length = 1270
Score = 37.4 bits (85), Expect = 0.010
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
Frame = +1
Query: 34 SGKSPTKLLLCDNCDNGYHLFCL----TPILPSVPKSSWFC 70
SG P ++LCD C+ YH+ CL L +P+ +W C
Sbjct: 235 SGFGPRTIILCDQCEKEYHVGCLRDHKMAYLKELPEGNWLC 357
>TC221711 weakly similar to UP|Q84XG3 (Q84XG3) SET domain protein SDG117,
partial (12%)
Length = 1208
Score = 35.0 bits (79), Expect = 0.048
Identities = 37/148 (25%), Positives = 62/148 (41%), Gaps = 19/148 (12%)
Frame = +1
Query: 197 MMERGECPPLMVVYDPVEGFTIEADKSIKDLTIITEYVGDV-DFLKNRE----------- 244
+++ G L V +G+ + A ++I T + EY+G+V D + R+
Sbjct: 52 VLQNGVRVKLEVFKTEKKGWAVRAGEAILRGTFVCEYIGEVLDVQEARDRRKRYGAEHCS 231
Query: 245 --HDDGDSIMTLLSASNPSQSLVICPDKRSNIARFIN-----GINNHTPEGKKKQNLKCV 297
+D + + VI K N++RFIN + NH +++ C
Sbjct: 232 YLYDIDARVNDMGRLIEEQAQYVIDATKFGNVSRFINHSCSPNLVNHQV---LVESMDCE 402
Query: 298 RYNVDGECRVLLIANRDIAKGERLYYDY 325
R ++ A+RDIA GE L YDY
Sbjct: 403 RAHIG------FYASRDIALGEELTYDY 468
>TC229811 similar to UP|Q9FIH7 (Q9FIH7) Similarity to SET-domain
transcriptional regulator, partial (11%)
Length = 1108
Score = 34.7 bits (78), Expect = 0.063
Identities = 28/104 (26%), Positives = 49/104 (46%), Gaps = 8/104 (7%)
Frame = +1
Query: 230 ITEYVGD-----VDFLKNREHDD---GDSIMTLLSASNPSQSLVICPDKRSNIARFINGI 281
+ EY+G+ + ++ R+++ G S + L V+ KR IARF+
Sbjct: 169 VIEYIGELIRPRISDIRERQYEKMGIGSSYLFRLD-----DGYVVDATKRGGIARFV--- 324
Query: 282 NNHTPEGKKKQNLKCVRYNVDGECRVLLIANRDIAKGERLYYDY 325
NH+ E N +V+G+ ++ + A R IA GE + Y+Y
Sbjct: 325 -NHSCE----PNCYTKVISVEGQKKIFIYAKRHIAAGEEITYNY 441
>TC217391 similar to UP|Q6T283 (Q6T283) Predicted protein, partial (28%)
Length = 1127
Score = 34.3 bits (77), Expect = 0.082
Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 4/72 (5%)
Frame = +3
Query: 44 CDNCDNGYHLFCLTPI----LPSVPKSSWFCPSCSHNPKIPKFPLVQTKIIDFFKIQRTS 99
CD C+ YH+ CL + L +PK WFC C +I + +Q + +I S
Sbjct: 15 CDQCEKEYHVGCLRDMGLCELEELPKDKWFC--CDDCNRI--YAALQNSVSAGAEIIPAS 182
Query: 100 DASQILNHEEEK 111
+ I+ E+K
Sbjct: 183 FSELIIRKHEDK 218
>AW755354
Length = 436
Score = 33.9 bits (76), Expect = 0.11
Identities = 11/35 (31%), Positives = 19/35 (53%)
Frame = +3
Query: 29 CQKCNSGKSPTKLLLCDNCDNGYHLFCLTPILPSV 63
C+ C T L+CD+C+ YH+ C+ P + +
Sbjct: 318 CKCCGEKADDTDCLVCDSCEEIYHVSCIEPAVKEI 422
>TC217528 similar to GB|AAO64916.1|29029074|BT005981 At5g53430 {Arabidopsis
thaliana;} , partial (24%)
Length = 1473
Score = 32.7 bits (73), Expect = 0.24
Identities = 22/65 (33%), Positives = 33/65 (49%)
Frame = +1
Query: 261 SQSLVICPDKRSNIARFINGINNHTPEGKKKQNLKCVRYNVDGECRVLLIANRDIAKGER 320
S+ +V+ + NIAR IN H+ + V D E R++LIA ++A G+
Sbjct: 889 SEEVVVDATDKGNIARLIN----HSCMPNCYARIMSVG---DEESRIVLIAKTNVAAGDE 1047
Query: 321 LYYDY 325
L YDY
Sbjct: 1048LTYDY 1062
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.333 0.146 0.480
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,974,701
Number of Sequences: 63676
Number of extensions: 277188
Number of successful extensions: 1777
Number of sequences better than 10.0: 56
Number of HSP's better than 10.0 without gapping: 1757
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1773
length of query: 337
length of database: 12,639,632
effective HSP length: 98
effective length of query: 239
effective length of database: 6,399,384
effective search space: 1529452776
effective search space used: 1529452776
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 59 (27.3 bits)
Medicago: description of AC141323.10