TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC141323.1 + phase: 0 /pseudo
         (633 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC234828                                                               40  0.002
TC215346 homologue to UP|Q8LP18 (Q8LP18) Cullin-like protein1, p...    28  9.5

>TC234828 
          Length = 857

 Score = 40.4 bits (93), Expect = 0.002
 Identities = 28/77 (36%), Positives = 36/77 (46%)
 Frame = +1

Query: 101 LINYKWYAIFQKFFLMKFLMCLQREKLSFRLILFLERSLCL*HLIVCQLLSWPS*RNN*K 160
           L+ Y+W   FQKFF M F+ C  REK +  L   L R  C   LI C   +   *R+  +
Sbjct: 622 LVVYRWCQNFQKFFRMMFVNCHLREKWNSLLTWCLGRIQCRLRLIECLRWN*QR*RHKYR 801

Query: 161 ISLRRSLLDQVFRLGER 177
                +L  Q    GER
Sbjct: 802 TF*ANNLFVQAHHRGER 852


>TC215346 homologue to UP|Q8LP18 (Q8LP18) Cullin-like protein1, partial (13%)
          Length = 1050

 Score = 28.5 bits (62), Expect = 9.5
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +3

Query: 363 LSQLLRLEAFWDWLVIIDDL*KDFSS*HFH 392
           L  +L L   W W +I+ ++*+DF    FH
Sbjct: 894 LKSILSLFVLWQWKLILGEI*EDFEFEQFH 983


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.382    0.171    0.711 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,719,225
Number of Sequences: 63676
Number of extensions: 463543
Number of successful extensions: 7588
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2146
Number of HSP's successfully gapped in prelim test: 290
Number of HSP's that attempted gapping in prelim test: 5350
Number of HSP's gapped (non-prelim): 2650
length of query: 633
length of database: 12,639,632
effective HSP length: 103
effective length of query: 530
effective length of database: 6,081,004
effective search space: 3222932120
effective search space used: 3222932120
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 13 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 35 (21.8 bits)
S2: 62 (28.5 bits)