TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC141115.10 + phase: 0 /pseudo
         (173 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC216399 homologue to UP|Q700A9 (Q700A9) C2 domain-containing pr...   117  2e-27
TC216398 homologue to UP|Q6NPD6 (Q6NPD6) At2g22125, partial (60%)     110  3e-25
TC216400 homologue to UP|Q6NPD6 (Q6NPD6) At2g22125, partial (69%)      79  1e-15
TC208394 similar to UP|O81226 (O81226) Glutamine cyclotransferas...    28  2.2
TC216810 similar to PIR|T51557|T51557 Exportin1 (XPO1) protein -...    27  3.7
TC206776 similar to UP|Q7XXP9 (Q7XXP9) RNA helicase (Fragment), ...    27  4.8

>TC216399 homologue to UP|Q700A9 (Q700A9) C2 domain-containing protein
           (Fragment), partial (92%)
          Length = 1011

 Score =  117 bits (294), Expect = 2e-27
 Identities = 80/178 (44%), Positives = 99/178 (54%), Gaps = 41/178 (23%)
 Frame = +1

Query: 13  MDALFLLIQGWSACPVEVSRDQSNAAAYAIPLLQNLIQFGPVLFFEKAEFI-------LV 65
           +DALFLL Q WSACP EVSR QS AAA AIPLLQ LIQ GP  F EKAEF+       LV
Sbjct: 148 LDALFLLRQAWSACPAEVSRAQSIAAADAIPLLQYLIQSGPPRFQEKAEFLLQCLPGTLV 327

Query: 66  MIVKRGNNMRQCVGNQG---KITL-------------EANQEWDERFTY---------MV 100
           +I+KRGNNM+Q VGN     K+TL               N EW E F++          +
Sbjct: 328 VIIKRGNNMKQSVGNPSVYCKLTLGNTPPRQTQVVSTGPNPEWGESFSWTFESPPKGQKL 507

Query: 101 L*ECSSRT--------EASYLLQKQA*SGK-ADEHTLLPTSKSGQPRNLEVELKWSNK 149
              C +++        + +  + +    G  A E+ LLP SKSG PRNLE+E +WSNK
Sbjct: 508 HISCKNKSKVGKSKFGKVTIQIDRVVMLGSVAGEYALLPQSKSGPPRNLEIEFQWSNK 681


>TC216398 homologue to UP|Q6NPD6 (Q6NPD6) At2g22125, partial (60%)
          Length = 859

 Score =  110 bits (276), Expect = 3e-25
 Identities = 78/178 (43%), Positives = 95/178 (52%), Gaps = 43/178 (24%)
 Frame = +1

Query: 15  ALFLLIQGWSACPVEVSRDQSNAAAYAIPLLQNLIQFGPVLFFEKAEFI-------LVMI 67
           ALFL    WSACP EVSR QS AAA AIPLLQ LIQ GP  F EKAEF+       LV+I
Sbjct: 28  ALFLXXXAWSACPAEVSRAQSIAAADAIPLLQYLIQXGPPRFQEKAEFLLQCLPGTLVVI 207

Query: 68  VKRGNNMRQCVGNQG---KITL-------------EANQEWDERFTYMVL*ECSSRTEAS 111
           +K GNNM+Q VGN     K+TL               N EWDE FT+    E   + +  
Sbjct: 208 IKCGNNMKQSVGNPSVFCKLTLGNTPPRQTKVVSTGPNPEWDESFTWSF--ESPPKGQKL 381

Query: 112 YL-LQKQA*SGKAD-------------------EHTLLPTSKSGQPRNLEVELKWSNK 149
           ++  + ++  GK+                    E+TLLP SKSG  RNLE+E +WSNK
Sbjct: 382 HISCKNKSKMGKSSFGKVTIQIDRVVMLGAVSGEYTLLPESKSGPSRNLEIEFQWSNK 555


>TC216400 homologue to UP|Q6NPD6 (Q6NPD6) At2g22125, partial (69%)
          Length = 857

 Score = 78.6 bits (192), Expect = 1e-15
 Identities = 49/84 (58%), Positives = 56/84 (66%), Gaps = 10/84 (11%)
 Frame = +2

Query: 13  MDALFLLIQGWSACPVEVSRDQSNAAAYAIPLLQNLIQFGPVLFFEKAEFI-------LV 65
           +DALFLL Q WSACP EVSR QS AAA AIPLLQ    + P  F EKAEF+       LV
Sbjct: 599 LDALFLLRQAWSACPAEVSRAQSIAAADAIPLLQT*SSW-PTSFHEKAEFLLQCLPGTLV 775

Query: 66  MIVKRGNNMRQCVGNQG---KITL 86
           +I+K GNNM+Q VGN     K+TL
Sbjct: 776 VIIKCGNNMKQSVGNPSVFCKLTL 847


>TC208394 similar to UP|O81226 (O81226) Glutamine cyclotransferase precursor 
           , partial (30%)
          Length = 816

 Score = 28.1 bits (61), Expect = 2.2
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -2

Query: 138 RNLEVELKWSNKPSYAYSIKLSIPSFKFDYLFILV 172
           RNL+    W    S+ Y + L+IPS+ F  + I+V
Sbjct: 269 RNLDFIQLWPQFSSHKYPLLLTIPSYPFQTINIIV 165


>TC216810 similar to PIR|T51557|T51557 Exportin1 (XPO1) protein - Arabidopsis
           thaliana (fragment) {Arabidopsis thaliana;} , partial
           (22%)
          Length = 1237

 Score = 27.3 bits (59), Expect = 3.7
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -2

Query: 103 ECSSRTEASYLLQKQA*SGKADEHTLLPTSKSGQP 137
           +C SR   S +   ++ SGK D  TL P + S  P
Sbjct: 291 KCQSRRRISLVQLSKSMSGKTDYRTLSPETSSASP 187


>TC206776 similar to UP|Q7XXP9 (Q7XXP9) RNA helicase (Fragment), partial
           (29%)
          Length = 768

 Score = 26.9 bits (58), Expect = 4.8
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -2

Query: 142 VELKWSNKPSYAYSIKLSIPSFKFD 166
           + + W NK SY Y I + +   KF+
Sbjct: 764 IHINWYNKHSYGYRINVEVGEIKFN 690


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.328    0.139    0.431 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,972,686
Number of Sequences: 63676
Number of extensions: 96439
Number of successful extensions: 582
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 573
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 577
length of query: 173
length of database: 12,639,632
effective HSP length: 91
effective length of query: 82
effective length of database: 6,845,116
effective search space: 561299512
effective search space used: 561299512
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 55 (25.8 bits)