BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC141114.7 + phase: 0
(246 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC218884 similar to UP|Q9S7L3 (Q9S7L3) TRNA intron endonuclease,... 347 3e-96
CO980884 215 2e-56
BG238177 weakly similar to SP|P46270|UCRX_S Ubiquinol-cytochrome... 103 5e-23
TC209512 similar to UP|Q6SF22 (Q6SF22) Tetracycline resistance p... 29 2.2
CF806920 28 2.9
TC205844 28 3.8
TC222960 similar to UP|Q43323 (Q43323) Membrane protein, partial... 27 6.5
TC218887 similar to UP|Q41042 (Q41042) Pisum sativum L. (clone n... 27 8.5
>TC218884 similar to UP|Q9S7L3 (Q9S7L3) TRNA intron endonuclease, partial
(38%)
Length = 769
Score = 347 bits (890), Expect = 3e-96
Identities = 169/216 (78%), Positives = 185/216 (85%)
Frame = +3
Query: 31 QLQSSLVQSNTCGFLSDNCVHLTVQAEQLDLLDKACFGRPVRIVEKDMYWFQLTVEEAFY 90
Q+QSSLVQS+T GFLS + VHL V+AEQL LLDKACFG PVR VEKD FQL+ EEAFY
Sbjct: 3 QIQSSLVQSDTRGFLSGSSVHLVVEAEQLHLLDKACFGSPVRTVEKDKPRFQLSFEEAFY 182
Query: 91 LCYSLKCLKIKINVGADTGPLNDEELWHYFRSKKETFPYFYKAYSHLRMKNWVVRSGAQY 150
LCYSLKCLKI N DT DEELWHY +SKKETFP FYKAYSHLRMKNWVVRSGAQY
Sbjct: 183 LCYSLKCLKIN-NDSDDTSSQTDEELWHYMKSKKETFPCFYKAYSHLRMKNWVVRSGAQY 359
Query: 151 GVDLIVYRHHPARVHSEYGVLVLSHDKDGDLNGRLRVWSDVHCTTRLLGGVAKTLLVLYV 210
G D +VYRHHPARVHSEYGVLVLS ++D DLNGRLRVWSDVHCTTRLLGGVAK LLVLYV
Sbjct: 360 GADFVVYRHHPARVHSEYGVLVLSDEEDKDLNGRLRVWSDVHCTTRLLGGVAKILLVLYV 539
Query: 211 NKNGNNDESLLCLTNYTVEERTISRWSPEQCRERSI 246
N+NG ++ES LCL NYTVEERTI+RW+PEQCRE+ +
Sbjct: 540 NRNGGSNESPLCLANYTVEERTITRWNPEQCREKMV 647
>CO980884
Length = 525
Score = 215 bits (547), Expect = 2e-56
Identities = 99/144 (68%), Positives = 114/144 (78%)
Frame = -1
Query: 103 NVGADTGPLNDEELWHYFRSKKETFPYFYKAYSHLRMKNWVVRSGAQYGVDLIVYRHHPA 162
N D P N EELWHY +SKKETF YKAYSH+RMKNWVVRSGAQYG D +VY HHP
Sbjct: 519 NDSDDXSPQNSEELWHYMKSKKETFHCLYKAYSHMRMKNWVVRSGAQYGADFVVYCHHPX 340
Query: 163 RVHSEYGVLVLSHDKDGDLNGRLRVWSDVHCTTRLLGGVAKTLLVLYVNKNGNNDESLLC 222
VHSEYGVLVLS +D DLNGRLRVW DVH TT L+GGVAK LLVLYVN+NG+++E LC
Sbjct: 339 XVHSEYGVLVLSDGEDKDLNGRLRVWCDVHSTTGLVGGVAKILLVLYVNRNGSSNECPLC 160
Query: 223 LTNYTVEERTISRWSPEQCRERSI 246
L ++EE TI+RW+PEQCRE+ +
Sbjct: 159 LAXXSIEEHTITRWNPEQCREKMV 88
>BG238177 weakly similar to SP|P46270|UCRX_S Ubiquinol-cytochrome C reductase
complex 8.0 kDa protein (EC 1.10.2.2). [Potato] {Solanum
tuberosum}, partial (66%)
Length = 467
Score = 103 bits (258), Expect = 5e-23
Identities = 51/61 (83%), Positives = 56/61 (91%)
Frame = +3
Query: 1 MAPRWKGKDAKSKKEAEAEALKEPMSKIISQLQSSLVQSNTCGFLSDNCVHLTVQAEQLD 60
MAPRWKGKDAK+KK+A+AEALKEPMSKI+SQLQSSLVQSNTCGFLS + VHL V AEQL
Sbjct: 285 MAPRWKGKDAKAKKDAQAEALKEPMSKIVSQLQSSLVQSNTCGFLSGSSVHLAVGAEQLH 464
Query: 61 L 61
L
Sbjct: 465 L 467
>TC209512 similar to UP|Q6SF22 (Q6SF22) Tetracycline resistance protein,
partial (5%)
Length = 1375
Score = 28.9 bits (63), Expect = 2.2
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +2
Query: 76 KDMYWFQLTVEEAFYLCYSLKCLKI 100
K ++W+ L E +LCY KC+K+
Sbjct: 845 KCLFWYHLCPCETCHLCYYFKCVKL 919
>CF806920
Length = 710
Score = 28.5 bits (62), Expect = 2.9
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = -2
Query: 24 PMSKIISQLQSSLVQSNTCG 43
P+S+I+ Q+Q SLV N CG
Sbjct: 361 PISRIMRQMQQSLVHKNICG 302
>TC205844
Length = 1142
Score = 28.1 bits (61), Expect = 3.8
Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Frame = -1
Query: 200 GVAKTLLVLYVNKNGNNDESLLCLTNYTVE-ERTI 233
G+ +T+LVLY NK NN L T + +E ER+I
Sbjct: 962 GIRRTILVLYANKTSNN*VVCLI*TCWLLETERSI 858
>TC222960 similar to UP|Q43323 (Q43323) Membrane protein, partial (52%)
Length = 731
Score = 27.3 bits (59), Expect = 6.5
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +2
Query: 127 FPYFYKAYSHLRMKNWVVRS 146
FP F YSH ++NW+V S
Sbjct: 572 FPIFSSVYSHRALRNWLVFS 631
>TC218887 similar to UP|Q41042 (Q41042) Pisum sativum L. (clone na-481-5),
partial (13%)
Length = 559
Score = 26.9 bits (58), Expect = 8.5
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Frame = -2
Query: 5 WKGKDAKSKKE---AEAEALKEPMSKIISQLQSSLVQSNTC 42
WK K + KK+ E EAL+ P + I L+++ V TC
Sbjct: 129 WKKKGERIKKKKLVTEEEALQNPTFR*IRVLENNRVSPRTC 7
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.320 0.136 0.420
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,007,656
Number of Sequences: 63676
Number of extensions: 188298
Number of successful extensions: 903
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 898
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 902
length of query: 246
length of database: 12,639,632
effective HSP length: 95
effective length of query: 151
effective length of database: 6,590,412
effective search space: 995152212
effective search space used: 995152212
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)
Medicago: description of AC141114.7