BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC141111.8 - phase: 0 /pseudo
(779 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
NP595172 polyprotein [Glycine max] 280 1e-75
BQ272766 weakly similar to GP|28558781|gb| pol protein {Cucumis ... 194 1e-49
BU549069 187 2e-47
TC211627 82 7e-30
CO982196 114 2e-25
BI425021 110 2e-24
BI424213 78 2e-14
BI317638 weakly similar to GP|9294238|dbj| contains similarity t... 77 3e-14
BM084967 72 1e-12
TC211973 weakly similar to UP|Q84ZV5 (Q84ZV5) Polyprotein, parti... 71 2e-12
CA820403 weakly similar to GP|13273463|gb| pol protein integrase... 57 1e-10
TC213114 weakly similar to UP|Q8W150 (Q8W150) Polyprotein, parti... 65 1e-10
AW507721 weakly similar to GP|27764548|gb polyprotein {Glycine m... 64 3e-10
TC233069 64 3e-10
TC213413 weakly similar to UP|Q84ZV5 (Q84ZV5) Polyprotein, parti... 64 3e-10
TC212592 weakly similar to UP|Q84ZV5 (Q84ZV5) Polyprotein, parti... 55 9e-08
BM731326 weakly similar to GP|21740635|em OSJNBb0043H09.2 {Oryza... 54 2e-07
BQ299538 54 3e-07
BE660092 weakly similar to GP|9884624|dbj retroelement pol polyp... 50 4e-06
TC232772 weakly similar to UP|Q9LQH2 (Q9LQH2) F15O4.13, partial ... 49 1e-05
>NP595172 polyprotein [Glycine max]
Length = 4659
Score = 280 bits (717), Expect = 1e-75
Identities = 169/488 (34%), Positives = 257/488 (52%), Gaps = 15/488 (3%)
Frame = +1
Query: 303 SEFLKSIKEAQRDDVKFVDLLVARDQTEDIDFKIDDQGVLRFRGRICIPDNEEIKKMILE 362
S FL+ ++ D L+ Q D +G+L ++ R+ IP EEI IL+
Sbjct: 3049 SIFLEELRARLISDPHLKQLMETYKQGADASHYTVREGLLYWKDRVVIPAEEEIVNKILQ 3228
Query: 363 ESHRSSLSIHPGATKMYHDLKKIFWGSGLKRDVAQFVYSCLVCQESKVEHQKPAGMMVPL 422
E H S + H G T+ LK F+ ++ DV ++ CL+CQ++K + PAG++ PL
Sbjct: 3229 EYHSSPIGGHAGITRTLARLKAQFYWPKMQEDVKAYIQKCLICQQAKSNNTLPAGLLQPL 3408
Query: 423 DVLEWKWDSISMDFVTSLPNTPRGSDAIWVIVDRLTKSAHFLPINISFPVAQLAEIYIKE 482
+ + W+ ++MDF+T LPN+ G I V++DRLTK AHF+P+ + +AE ++
Sbjct: 3409 PIPQQVWEDVAMDFITGLPNS-FGLSVIMVVIDRLTKYAHFIPLKADYNSKVVAEAFMSH 3585
Query: 483 IVKLHGVPSSIVSDRDPRFTSRFWKSLQEALGSKLRLSSAYHPQTDGQSERTIQSLEDLL 542
IVKLHG+P SIVSDRD FTS FW+ L + G+ L +SSAYHPQ+DGQSE + LE L
Sbjct: 3586 IVKLHGIPRSIVSDRDRVFTSTFWQHLFKLQGTTLAMSSAYHPQSDGQSEVLNKCLEMYL 3765
Query: 543 RICVLEQGGTWDSHLPLIEFTYNNSYHSSIGMASFEALYGRRCRT---PLCWFESDERVV 599
R E W LP EF YN +YH S+GM F ALYGR T C +
Sbjct: 3766 RCFTYEHPKGWVKALPWAEFWYNTAYHMSLGMTPFRALYGREPPTLTRQACSIDDP---- 3933
Query: 600 LGPEIVQQTTEK---VQMIREKMKASQSRQKSYHDKRRKDLEFKEGDHMFLRVTPMTGVG 656
E+ +Q T++ + ++ + +Q K DK+R D+ F+ GD + +++ P
Sbjct: 3934 --AEVREQLTDRDALLAKLKINLTRAQQVMKRQADKKRLDVSFQIGDEVLVKLQPYRQHS 4107
Query: 657 RAL-KSKKLTPKFIGPYHILERVGTVAYRVGLPPHLSNLHNVFHVSQLR--------KYV 707
L K++KL+ ++ GP+ +L ++G VAY++ L P + +H VFHVSQL+ Y+
Sbjct: 4108 AVLRKNQKLSMRYFGPFKVLAKIGDVAYKLEL-PSAARIHPVFHVSQLKPFNGTAQDPYL 4284
Query: 708 PDPSHVIQSDDVQVRDNLTVETLPLRIDDRKVKTLRGKEIPLVRVVWSGATGESLTWELE 767
P P V + V P++I ++ +I + V W + TWE
Sbjct: 4285 PLPLTVTEMGPVM---------QPVKILASRIIIRGHNQIEQILVQWENGLQDEATWEDI 4437
Query: 768 SKMLESYP 775
+ SYP
Sbjct: 4438 EDIKASYP 4461
>BQ272766 weakly similar to GP|28558781|gb| pol protein {Cucumis melo},
partial (9%)
Length = 410
Score = 194 bits (493), Expect = 1e-49
Identities = 93/136 (68%), Positives = 112/136 (81%)
Frame = -3
Query: 628 SYHDKRRKDLEFKEGDHMFLRVTPMTGVGRALKSKKLTPKFIGPYHILERVGTVAYRVGL 687
SYHDKRRKDLEF+ GDH+FLRVTP TGVGRALKS KLTP FIGP+ IL++V VAY++ L
Sbjct: 408 SYHDKRRKDLEFEVGDHVFLRVTP*TGVGRALKS*KLTPHFIGPFQILKKVDFVAYQIAL 229
Query: 688 PPHLSNLHNVFHVSQLRKYVPDPSHVIQSDDVQVRDNLTVETLPLRIDDRKVKTLRGKEI 747
PP L++LHNVFHVSQ+ KY+ DPSH++ D VQV++NL ETLPLRI D + K LRGKEI
Sbjct: 228 PPSLTSLHNVFHVSQIHKYINDPSHMVNLDVVQVKENLAHETLPLRIKDMRTKHLRGKEI 49
Query: 748 PLVRVVWSGATGESLT 763
LV+V+W GA+GE T
Sbjct: 48 LLVKVIWGGASGEEAT 1
>BU549069
Length = 615
Score = 187 bits (475), Expect = 2e-47
Identities = 89/132 (67%), Positives = 108/132 (81%)
Frame = -1
Query: 647 LRVTPMTGVGRALKSKKLTPKFIGPYHILERVGTVAYRVGLPPHLSNLHNVFHVSQLRKY 706
L+VTP TGVG+ALKS+KLTP FIG + IL+R VAY++ LPP LSNLHNVFHVSQLR Y
Sbjct: 615 LKVTPRTGVGQALKSRKLTPHFIGHFQILKRAXPVAYQIALPPSLSNLHNVFHVSQLRMY 436
Query: 707 VPDPSHVIQSDDVQVRDNLTVETLPLRIDDRKVKTLRGKEIPLVRVVWSGATGESLTWEL 766
+ DPSHV++ DDVQV++NLT ETLPLRI+DR+ K LR KE PLV+V+W G +GE TWEL
Sbjct: 435 IHDPSHVVKLDDVQVKENLTYETLPLRIEDRRTKHLRRKENPLVKVIWGGTSGEDATWEL 256
Query: 767 ESKMLESYP*LF 778
ES+M +YP LF
Sbjct: 255 ESQMRVAYPSLF 220
>TC211627
Length = 1034
Score = 81.6 bits (200), Expect(2) = 7e-30
Identities = 52/158 (32%), Positives = 79/158 (49%), Gaps = 1/158 (0%)
Frame = +3
Query: 618 KMKASQSRQKSYHDKRRKDLEFKEGDHMFLRVTPMTGVGRALKSKKLTPKFIGPYHILER 677
+++ Q K D R+DL F GD +++R+ P KL+ +F GPY I R
Sbjct: 357 RLQKYQDSMKRIADSHRRDLTFNIGDWVYVRL*PYRQTSIQSTYTKLSKRFYGPYQIQAR 536
Query: 678 VGTVAYRVGLPPHLSNLHNVFHVSQLR-KYVPDPSHVIQSDDVQVRDNLTVETLPLRIDD 736
VG VAYR+ LPP S +H +FHVS L+ + P P ++ ++ V+ PL+ D
Sbjct: 537 VGQVAYRLQLPP-TSKIHPIFHVSLLKVHHGPIPPELLALPPFSTTNHPLVQ--PLQFLD 707
Query: 737 RKVKTLRGKEIPLVRVVWSGATGESLTWELESKMLESY 774
K+ IP V V W+ E TWE +++ + Y
Sbjct: 708 WKMDESTTPPIPQVLVQWTNLAPEDTTWESWTQLKDIY 821
Score = 68.2 bits (165), Expect(2) = 7e-30
Identities = 37/78 (47%), Positives = 43/78 (54%)
Frame = +2
Query: 501 FTSRFWKSLQEALGSKLRLSSAYHPQTDGQSERTIQSLEDLLRICVLEQGGTWDSHLPLI 560
F S W L G+KLR S+AYHPQTDGQ+E + LE LR V + W L L
Sbjct: 5 FISGLWHELFHISGTKLRFSTAYHPQTDGQTEVINRILEQYLRAFVHDHPQHWFKFLSLA 184
Query: 561 EFTYNNSYHSSIGMASFE 578
E YN S HS IG + FE
Sbjct: 185 E*CYNTSVHSGIGFSPFE 238
>CO982196
Length = 812
Score = 114 bits (284), Expect = 2e-25
Identities = 60/166 (36%), Positives = 94/166 (56%)
Frame = +1
Query: 340 GVLRFRGRICIPDNEEIKKMILEESHRSSLSIHPGATKMYHDLKKIFWGSGLKRDVAQFV 399
G L F+ R+ + N ++L+E S L H G + + + + + G+K+ +V
Sbjct: 316 GKLYFKDRLVLSKNSTKIPLLLKELQDSPLGGHSGFFRTFKRVANVVFWQGMKKTTRDYV 495
Query: 400 YSCLVCQESKVEHQKPAGMMVPLDVLEWKWDSISMDFVTSLPNTPRGSDAIWVIVDRLTK 459
+C +C+ +K PAG++ L + W ISMDF+ LP +G D I V+VDRLTK
Sbjct: 496 AACEICRRNKTSTLSPAGLL*LLPIPTKVWTDISMDFIGGLPKA-QGKDNILVVVDRLTK 672
Query: 460 SAHFLPINISFPVAQLAEIYIKEIVKLHGVPSSIVSDRDPRFTSRF 505
AHF ++ + ++AE++IKE+V+LHG P+SIVSD F S F
Sbjct: 673 YAHFFALSHPYTAKEVAELFIKELVRLHGFPASIVSDXXRLFMSLF 810
>BI425021
Length = 426
Score = 110 bits (276), Expect = 2e-24
Identities = 58/143 (40%), Positives = 83/143 (57%)
Frame = -1
Query: 419 MVPLDVLEWKWDSISMDFVTSLPNTPRGSDAIWVIVDRLTKSAHFLPINISFPVAQLAEI 478
+ PL V + W+ +SMDF+ LP G I+V+V+R +K H + S +A +
Sbjct: 426 LCPLPVPQRPWEDLSMDFIVGLPPY-HGHTTIFVVVNRFSKGIHLGTLPTSHTAHMVASL 250
Query: 479 YIKEIVKLHGVPSSIVSDRDPRFTSRFWKSLQEALGSKLRLSSAYHPQTDGQSERTIQSL 538
++ ++KLHG P SIVSDRDP F S FW+ L G+ LR+SSAYHPQTDGQ+E + +
Sbjct: 249 FLNIVIKLHGFPRSIVSDRDPLFISHFWQDLFRLSGTVLRMSSAYHPQTDGQTEVLNRVI 70
Query: 539 EDLLRICVLEQGGTWDSHLPLIE 561
E LR V + +P +E
Sbjct: 69 EQYLRAFVHGRPRNLGRFIPWVE 1
>BI424213
Length = 426
Score = 77.8 bits (190), Expect = 2e-14
Identities = 38/87 (43%), Positives = 51/87 (57%)
Frame = +1
Query: 503 SRFWKSLQEALGSKLRLSSAYHPQTDGQSERTIQSLEDLLRICVLEQGGTWDSHLPLIEF 562
S FWK+L LG+KL S+ HPQTDGQ++ +SL LLR + +WD +LP +EF
Sbjct: 4 SHFWKTLWAKLGTKLLFSTTCHPQTDGQTKVVNRSLSTLLRALLKGNHKSWDEYLPHVEF 183
Query: 563 TYNNSYHSSIGMASFEALYGRRCRTPL 589
YN H + + FE +YG TPL
Sbjct: 184 AYNRGVHRTTKQSPFEVVYGFNPLTPL 264
>BI317638 weakly similar to GP|9294238|dbj| contains similarity to reverse
transcriptase~gene_id:K11J14.5 {Arabidopsis thaliana},
partial (5%)
Length = 420
Score = 77.0 bits (188), Expect = 3e-14
Identities = 43/124 (34%), Positives = 67/124 (53%)
Frame = -2
Query: 386 FWGSGLKRDVAQFVYSCLVCQESKVEHQKPAGMMVPLDVLEWKWDSISMDFVTSLPNTPR 445
F + + + AQ + +CL CQ +K E ++ ++ PL V W+ +S+DF+T L
Sbjct: 374 FQRTSIGLECAQMLPNCLDCQHTKYETKRIVDLLCPLLVPHRPWEDLSLDFITGLLPY-H 198
Query: 446 GSDAIWVIVDRLTKSAHFLPINISFPVAQLAEIYIKEIVKLHGVPSSIVSDRDPRFTSRF 505
AI V+VD +K H + S +A ++I + KLHG+P S+VSD D F S F
Sbjct: 197 VHTAILVVVDHFSKGIHLGMLPSSHTAHTVACLFIDSVAKLHGLPRSLVSDCDLLFVSHF 18
Query: 506 WKSL 509
W+ L
Sbjct: 17 WQEL 6
>BM084967
Length = 426
Score = 71.6 bits (174), Expect = 1e-12
Identities = 44/118 (37%), Positives = 61/118 (51%)
Frame = -2
Query: 339 QGVLRFRGRICIPDNEEIKKMILEESHRSSLSIHPGATKMYHDLKKIFWGSGLKRDVAQF 398
Q ++ G I +P +L E H S H G TK L + F G+++DV QF
Sbjct: 356 QDLILKNGCIWLPSGFSFIPTLLLEYHSSPTDAHIGVTKTMARLSENFTWIGIRKDVEQF 177
Query: 399 VYSCLVCQESKVEHQKPAGMMVPLDVLEWKWDSISMDFVTSLPNTPRGSDAIWVIVDR 456
V +CL CQ +K E QK AG++ PL V W+ +S +F+ L RG AI V+V R
Sbjct: 176 VAACLDCQYTKYEAQKMAGLLCPLPVPCRPWEDLSFNFIIGLSEF-RGYTAILVVVGR 6
>TC211973 weakly similar to UP|Q84ZV5 (Q84ZV5) Polyprotein, partial (4%)
Length = 730
Score = 71.2 bits (173), Expect = 2e-12
Identities = 37/100 (37%), Positives = 63/100 (63%), Gaps = 1/100 (1%)
Frame = +1
Query: 615 IREKMKASQSRQKSYHDKRRKDLEFKEGDHMFLRVTPMTGVGRALK-SKKLTPKFIGPYH 673
+RE + S + +KRR+D+E+ GD +FL++ P A + ++KL+P+F P+
Sbjct: 64 LRENLLKS*DIM*ANTNKRRRDIEYVVGD*VFLKMQPYRRRSLAKRINEKLSPRFYAPFQ 243
Query: 674 ILERVGTVAYRVGLPPHLSNLHNVFHVSQLRKYVPDPSHV 713
+ +VGT+AY++ LP H+ +H VFHVS L+K P+ H+
Sbjct: 244 VFNKVGTIAYKLDLPSHI-KIHPVFHVSLLKKASPNLYHL 360
>CA820403 weakly similar to GP|13273463|gb| pol protein integrase region
{Ginkgo biloba}, partial (52%)
Length = 421
Score = 56.6 bits (135), Expect(2) = 1e-10
Identities = 33/76 (43%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Frame = -3
Query: 479 YIKEIVKLHGVPSSIVSDRDPRFT-SRFWKSLQEALGSKLRLSSAYHPQTDGQSERTIQS 537
+IKE VKLHG SSIVSD D F S FW L + G+KL+ S AYHPQ D ++ +
Sbjct: 335 FIKEAVKLHGCSSSIVSDWDRLFLIS*FWTELFKMEGTKLKFSLAYHPQPDSHTKVVNRC 156
Query: 538 LEDLLRICVLEQGGTW 553
+E L+ + W
Sbjct: 155 IEMNLQCLTTSKRKQW 108
Score = 28.1 bits (61), Expect(2) = 1e-10
Identities = 12/34 (35%), Positives = 23/34 (67%)
Frame = -1
Query: 450 IWVIVDRLTKSAHFLPINISFPVAQLAEIYIKEI 483
I VIV R TK AHF+ ++ + +++E+ +K++
Sbjct: 421 IMVIVYRFTKYAHFVVLSHPYLAKEVSEVLLKKL 320
>TC213114 weakly similar to UP|Q8W150 (Q8W150) Polyprotein, partial (7%)
Length = 810
Score = 64.7 bits (156), Expect = 1e-10
Identities = 39/115 (33%), Positives = 66/115 (56%), Gaps = 11/115 (9%)
Frame = +3
Query: 627 KSYHDKRRKDLEFKEGDHMFLRVTPMTGVGRALK-SKKLTPKFIGPYHILERVGTVAYRV 685
K+Y D+ R+ + GD ++L++ P A K ++KL+P+F GPY I +++G VA+ +
Sbjct: 6 KAYADRSRRAVTLSVGDWVYLKLQPYRLKSLAKKRNEKLSPRFYGPYQIKKQIGLVAFEL 185
Query: 686 GLPPHLSNLHNVFHVSQLRKYV-----PDPSHVIQSDDV-----QVRDNLTVETL 730
LPP +H VFH S L+K V P P ++ S+D+ Q++ L++ L
Sbjct: 186 DLPP-ARKIHPVFHASLLKKAVAATANPQPLPLMLSEDLSSEFFQLKSKLSITIL 347
>AW507721 weakly similar to GP|27764548|gb polyprotein {Glycine max}, partial
(3%)
Length = 464
Score = 63.9 bits (154), Expect = 3e-10
Identities = 28/80 (35%), Positives = 51/80 (63%), Gaps = 1/80 (1%)
Frame = +1
Query: 341 VLRFRGRICIPDNEEIKKMILEESHRSSLSIHPGATKMYHDLKKIFWGSGLKRDVAQFVY 400
V+ ++GRI +P++ ++ KMI+ ESH S + H G T+ + F+ ++ D+ +FV
Sbjct: 223 VIIWKGRIMLPNDSQLLKMIMTESHASKVGGHAGTTRTIVRINAQFYWPKMREDIMKFVQ 402
Query: 401 SCLVCQESKVEHQ-KPAGMM 419
C++CQ++KV H PAG++
Sbjct: 403 ECVICQQAKVTHSLLPAGLL 462
>TC233069
Length = 881
Score = 63.9 bits (154), Expect = 3e-10
Identities = 36/82 (43%), Positives = 49/82 (58%), Gaps = 2/82 (2%)
Frame = +2
Query: 391 LKRDVAQFVYSCLVCQESKVEHQKPAGMMVPLDVLEWKWDSISMDFVTSLPNTPRGSDAI 450
+ RDV + +C CQ++K QK G++ PL + W ISMDFVT LP + G I
Sbjct: 224 MARDVCDHICACTNCQQNKYSTQK*FGLLQPLPIP*QVWKDISMDFVTHLPPS-*GKKMI 400
Query: 451 WVIVDRLTKSAHF--LPINISF 470
WVIVD TK +HF LP ++S+
Sbjct: 401 WVIVDCWTKYSHFLSLPAHLSY 466
>TC213413 weakly similar to UP|Q84ZV5 (Q84ZV5) Polyprotein, partial (5%)
Length = 761
Score = 63.9 bits (154), Expect = 3e-10
Identities = 41/134 (30%), Positives = 63/134 (46%), Gaps = 1/134 (0%)
Frame = +1
Query: 642 GDHMFLRVTP-MTGVGRALKSKKLTPKFIGPYHILERVGTVAYRVGLPPHLSNLHNVFHV 700
GD + +++ P G KLT ++ GP+ + ER+G V YR+ L H S +H VFHV
Sbjct: 7 GDWVLVKLRPHRQGSASETTYSKLTKRYYGPFEVQERLGKVVYRLKLTAH-SRIHPVFHV 183
Query: 701 SQLRKYVPDPSHVIQSDDVQVRDNLTVETLPLRIDDRKVKTLRGKEIPLVRVVWSGATGE 760
S L+ +V DP + + V PL + D K+ +V V W A+ +
Sbjct: 184 SLLKAFVGDP-ETTHAGPLPVMRTEEATNTPLTVIDSKLVPADNGPRRMVLVQWPSASRQ 360
Query: 761 SLTWELESKMLESY 774
+WE + E Y
Sbjct: 361 DASWEDWQVLRERY 402
>TC212592 weakly similar to UP|Q84ZV5 (Q84ZV5) Polyprotein, partial (4%)
Length = 664
Score = 55.5 bits (132), Expect = 9e-08
Identities = 37/112 (33%), Positives = 60/112 (53%)
Frame = +2
Query: 663 KLTPKFIGPYHILERVGTVAYRVGLPPHLSNLHNVFHVSQLRKYVPDPSHVIQSDDVQVR 722
KL+ +F GP+ ++ERVG VAYR+ LP + LH VFH S L+ + +P +
Sbjct: 74 KLSKRFFGPFQVVERVGKVAYRLQLPVD-AKLHPVFHCSLLKPFQGNPPDTAAPLPPTLF 250
Query: 723 DNLTVETLPLRIDDRKVKTLRGKEIPLVRVVWSGATGESLTWELESKMLESY 774
D+ +V PL I +T+ +I V V W G + + TWE +++ + +
Sbjct: 251 DHQSV-IAPLVI--LATRTVNDDDIE-VLVQWQGLSPDDATWEKWTELCKEF 394
>BM731326 weakly similar to GP|21740635|em OSJNBb0043H09.2 {Oryza sativa
(japonica cultivar-group)}, partial (3%)
Length = 424
Score = 54.3 bits (129), Expect = 2e-07
Identities = 29/88 (32%), Positives = 51/88 (57%), Gaps = 1/88 (1%)
Frame = +1
Query: 619 MKASQSRQKSYHDKRRKDLEFKEGDHMFLRVTP-MTGVGRALKSKKLTPKFIGPYHILER 677
++ +QS + + R+ + GD ++L++ P G KLT +F GPY ++ +
Sbjct: 25 LERAQSLMVKHANNHRRPHDINVGDWVYLKIRPHRQGSMPPRLHPKLTARFYGPYLVMRQ 204
Query: 678 VGTVAYRVGLPPHLSNLHNVFHVSQLRK 705
VG VA+++ LP + +H VFHVSQL++
Sbjct: 205 VGAVAFQLQLPSE-ARIHPVFHVSQLKR 285
>BQ299538
Length = 426
Score = 53.9 bits (128), Expect = 3e-07
Identities = 23/35 (65%), Positives = 28/35 (79%)
Frame = +1
Query: 475 LAEIYIKEIVKLHGVPSSIVSDRDPRFTSRFWKSL 509
LAEI+ KE+V LHGVP+S++SD DP F S FWK L
Sbjct: 28 LAEIFTKEVVHLHGVPASVLSDEDPIFVSSFWKEL 132
Score = 50.8 bits (120), Expect = 2e-06
Identities = 29/88 (32%), Positives = 45/88 (50%)
Frame = +3
Query: 497 RDPRFTSRFWKSLQEALGSKLRLSSAYHPQTDGQSERTIQSLEDLLRICVLEQGGTWDSH 556
R F + + + G+ L++S++YHP DGQ+ LE LR V +Q
Sbjct: 93 RGSNFCEFILEGIVKLPGTYLKMSTSYHP*IDGQTVN--HCLETFLRCFVADQPKM*VQW 266
Query: 557 LPLIEFTYNNSYHSSIGMASFEALYGRR 584
L E+ YN ++H+S G FE +YGR+
Sbjct: 267 LSWAEYWYNTNFHASTGTTPFEVVYGRK 350
>BE660092 weakly similar to GP|9884624|dbj retroelement pol polyprotein-like
{Arabidopsis thaliana}, partial (13%)
Length = 378
Score = 50.1 bits (118), Expect = 4e-06
Identities = 23/82 (28%), Positives = 45/82 (54%)
Frame = -3
Query: 508 SLQEALGSKLRLSSAYHPQTDGQSERTIQSLEDLLRICVLEQGGTWDSHLPLIEFTYNNS 567
+L + G R+S+ YHPQT+GQ+E + + ++ +L V W + L + + +
Sbjct: 370 ALLKKYGVVHRVSTPYHPQTNGQAEISNREIKRILEKIVQPSRKDWSTRLDDALWAHRTA 191
Query: 568 YHSSIGMASFEALYGRRCRTPL 589
Y + IGM+ + ++G+ C P+
Sbjct: 190 YKAPIGMSPYRVVFGKACHLPV 125
>TC232772 weakly similar to UP|Q9LQH2 (Q9LQH2) F15O4.13, partial (7%)
Length = 729
Score = 48.5 bits (114), Expect = 1e-05
Identities = 35/155 (22%), Positives = 70/155 (44%), Gaps = 4/155 (2%)
Frame = +1
Query: 557 LPLIEFTYNNSYHSSIGMASFEALYGRRCRTPLCWFESDERVVLGPEIVQQTTEKVQMIR 616
LP +EF YN + HS+ FE +Y TPL + E ++ +
Sbjct: 7 LPHVEFAYNRAVHSTTQHFPFEVVYDFNPLTPLDSLPLSNISGFKHKDAHAKVEYIKRLH 186
Query: 617 EKMKASQSRQKSYH----DKRRKDLEFKEGDHMFLRVTPMTGVGRALKSKKLTPKFIGPY 672
E+ K +++ + +K RK + + D +++ + + + KL P+ GP+
Sbjct: 187 EQAKTQIAKKNESYVKQTNKNRKKVVLEPSDWVWVHMRKERFPKQRMS--KLQPRGDGPF 360
Query: 673 HILERVGTVAYRVGLPPHLSNLHNVFHVSQLRKYV 707
+LER+ AY++ +P + + F+++ L +V
Sbjct: 361 QVLERINYNAYKIDIPGEY-EVSSSFNIADLTPFV 462
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.336 0.146 0.476
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,947,003
Number of Sequences: 63676
Number of extensions: 553888
Number of successful extensions: 3710
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 3658
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3691
length of query: 779
length of database: 12,639,632
effective HSP length: 105
effective length of query: 674
effective length of database: 5,953,652
effective search space: 4012761448
effective search space used: 4012761448
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 63 (28.9 bits)
Medicago: description of AC141111.8