BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC141111.7 - phase: 0 /pseudo
(1730 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC218494 weakly similar to UP|Q7XAM4 (Q7XAM4) Chromodomain-helic... 249 7e-66
BQ295904 248 2e-65
BM085232 228 2e-59
TC208491 similar to UP|Q7XBI0 (Q7XBI0) Swi2/Snf2-related protein... 127 6e-29
CO979327 125 1e-28
CO985811 120 7e-27
TC229357 weakly similar to UP|Q8VDZ1 (Q8VDZ1) Hells protein, par... 116 1e-25
BU761371 similar to GP|8843733|dbj SWI2/SNF2-like protein {Arabi... 114 4e-25
TC223271 similar to UP|SN24_HUMAN (P51532) Possible global trans... 110 4e-24
TC231837 similar to UP|ISWI_DROME (Q24368) Iswi protein (Imitati... 110 7e-24
TC232660 weakly similar to UP|Q6M609 (Q6M609) Superfamily II DNA... 106 1e-22
TC220907 weakly similar to UP|Q8NIR3 (Q8NIR3) Related to DNA rep... 84 4e-16
TC231761 similar to UP|O23055 (O23055) YUP8H12.27 protein, parti... 77 7e-14
TC228853 similar to UP|O04082 (O04082) Transcription factor RUSH... 72 3e-12
TC228722 weakly similar to UP|RAD5_YEAST (P32849) DNA repair pro... 70 6e-12
TC232838 similar to GB|AAP21377.1|30102918|BT006569 At1g47970 {A... 62 2e-09
TC228720 weakly similar to UP|RAD5_YEAST (P32849) DNA repair pro... 59 1e-08
TC217320 homologue to UP|Q9M378 (Q9M378) TATA box binding protei... 59 2e-08
TC232681 weakly similar to GB|AAP21377.1|30102918|BT006569 At1g4... 57 7e-08
BU545741 55 3e-07
>TC218494 weakly similar to UP|Q7XAM4 (Q7XAM4)
Chromodomain-helicase-DNA-binding protein-like protein,
partial (16%)
Length = 1123
Score = 249 bits (636), Expect = 7e-66
Identities = 132/188 (70%), Positives = 143/188 (75%), Gaps = 1/188 (0%)
Frame = +3
Query: 1544 KIRNYLQLLGRRIDQIVSEQEDEPHKQDRMTTRLWKYVSTFSHLSGERLHQIYSKLKLEQ 1603
KIRNYLQLLGRRIDQIV E E EP+KQDRMT RLWKYVSTFSHLSGERLHQIYSKL+ EQ
Sbjct: 6 KIRNYLQLLGRRIDQIVLEHEQEPYKQDRMTVRLWKYVSTFSHLSGERLHQIYSKLRQEQ 185
Query: 1604 NAVGVGSSLPNGSVSGPFSRNGNPNSSFPRPMERQTRFQNVTAHPMREQTYDTGMSEAWK 1663
N VG S NGSVS FSRNGNP F R MERQ +N+ + M E +TG SEAWK
Sbjct: 186 NEAEVGPSHTNGSVSVSFSRNGNP---FHRHMERQRGLKNMATYQMPEPVDNTGKSEAWK 356
Query: 1664 RRRRAENDGCFQGQPPPQRITSNGIRPLDPNSLGILGAGPS-QCFSGEKLLKTQPAGSPS 1722
RRRR E+D FQGQPPPQR SNGIR DPNSLGILGAGPS + F+ EK +TQP G PS
Sbjct: 357 RRRRTESDNHFQGQPPPQRTLSNGIRITDPNSLGILGAGPSDKRFASEKPYRTQPGGFPS 536
Query: 1723 RQEFSLGV 1730
RQ FS G+
Sbjct: 537 RQGFSSGI 560
>BQ295904
Length = 421
Score = 248 bits (633), Expect = 2e-65
Identities = 117/139 (84%), Positives = 130/139 (93%)
Frame = +3
Query: 1256 QINLIVAEVGGAIEAAPLKAQVELFNALIDGCREAVEVGSLDLKGPLLDFYGVPMKANEL 1315
Q++LIVAEVGGA+ AAP Q+ELFNALIDGC EAVE+G+LD KGPLLDF+GVP+KAN+L
Sbjct: 3 QVDLIVAEVGGAVGAAPPGVQIELFNALIDGCTEAVELGNLDAKGPLLDFFGVPVKANDL 182
Query: 1316 LIRVQELQLLAKRISRYEDPIAQFRVLTYLKPSNWSKGCGWNQIDDARLLLGVHYHGYGN 1375
L RVQ+LQLLAKRI RYEDPIAQFRVL+YLKPSNWSKGCGWNQIDDARLLLG+HYHG+GN
Sbjct: 183 LTRVQQLQLLAKRIGRYEDPIAQFRVLSYLKPSNWSKGCGWNQIDDARLLLGIHYHGFGN 362
Query: 1376 WEVIRLDERLGLTKKIAPV 1394
WE IRLDERLGLTKKIAPV
Sbjct: 363 WETIRLDERLGLTKKIAPV 419
>BM085232
Length = 386
Score = 228 bits (581), Expect = 2e-59
Identities = 114/128 (89%), Positives = 119/128 (92%)
Frame = -3
Query: 1064 GKLEKKEAKKGGSFFDKNELSAILRFGAEELFKEERNDEESKKRLLSMDIDEILERAEKV 1123
G+LEKKEAKKGGS+FDKNELSAILRFGAEELFKEERNDEESKKRLLSMDIDEILERAEKV
Sbjct: 384 GRLEKKEAKKGGSYFDKNELSAILRFGAEELFKEERNDEESKKRLLSMDIDEILERAEKV 205
Query: 1124 EEKENGGEQAHELLSAFKVANFCNDEDDGSFWSRWIKADSVAQAENALAPRAARNIKSYA 1183
EEKE GEQ +ELL AFKVANFCNDEDDGSFWSRWIK D+V QAE ALAPR+ARNIKSYA
Sbjct: 204 EEKETDGEQGNELLGAFKVANFCNDEDDGSFWSRWIKPDAVFQAEEALAPRSARNIKSYA 25
Query: 1184 EADQSERS 1191
E D SERS
Sbjct: 24 EVDPSERS 1
>TC208491 similar to UP|Q7XBI0 (Q7XBI0) Swi2/Snf2-related protein DDM1, partial
(22%)
Length = 839
Score = 127 bits (318), Expect = 6e-29
Identities = 70/172 (40%), Positives = 109/172 (62%), Gaps = 1/172 (0%)
Frame = +2
Query: 953 RLDGSTKSELRQQAMDHFNAPGSDDFCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDL 1012
R+DG K + R+Q + FN S+ FLLSTRAGGLGINL ADT I++DSDWNPQ DL
Sbjct: 2 RIDGGVKLDERKQQIQDFNDVNSNCRVFLLSTRAGGLGINLTAADTCILYDSDWNPQMDL 181
Query: 1013 QAMSRAHRIGQREVVNIYRFVTSKSVEEDILERAKKKMVLDHLVIQKLNAEGKLEKKEAK 1072
QAM R HRIGQ + V++YR T++S+E +L+RA K+ L+H+VI+K G+ ++ K
Sbjct: 182 QAMDRCHRIGQTKPVHVYRLSTAQSIEGRMLKRAFSKLKLEHVVIEK----GQFHQERTK 349
Query: 1073 KGG-SFFDKNELSAILRFGAEELFKEERNDEESKKRLLSMDIDEILERAEKV 1123
+++++ A+LR +E D+ + D++++L+R++ +
Sbjct: 350 PASMDEIEEDDVLALLR------DEETAEDKMIHTDISDEDLEKLLDRSDLI 487
>CO979327
Length = 868
Score = 125 bits (315), Expect = 1e-28
Identities = 70/177 (39%), Positives = 109/177 (61%), Gaps = 1/177 (0%)
Frame = -1
Query: 953 RLDGSTKSELRQQAMDHFNAPGSDDFCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDL 1012
R+DGS K R+Q + FN S+ LSTRAGGLGINL ADT I++DSDWNPQ DL
Sbjct: 859 RIDGSVKXXERKQQIQDFNDVNSNCRVXXLSTRAGGLGINLTVADTCILYDSDWNPQMDL 680
Query: 1013 QAMSRAHRIGQREVVNIYRFVTSKSVEEDILERAKKKMVLDHLVIQKLNAEGKLEKKEAK 1072
QAM R HRIGQ + V++YR T++S+E +L+RA K+ L+H+VI+K G+ ++ K
Sbjct: 679 QAMDRCHRIGQTKPVHVYRLSTAQSIEGRMLKRAFSKLKLEHVVIEK----GQFHQERTK 512
Query: 1073 KGG-SFFDKNELSAILRFGAEELFKEERNDEESKKRLLSMDIDEILERAEKVEEKEN 1128
+++++ A+LR +E D++ + D++++L+R++ + N
Sbjct: 511 PASMDEIEEDDVLALLR------DEETAEDKKIHTDISDEDLEKLLDRSDLIVNDSN 359
>CO985811
Length = 713
Score = 120 bits (300), Expect = 7e-27
Identities = 58/115 (50%), Positives = 81/115 (70%)
Frame = -3
Query: 936 LSDILAQYMSLRGFQFQRLDGSTKSELRQQAMDHFNAPGSDDFCFLLSTRAGGLGINLAT 995
L D++ +Y++ + +++ RLDG T R ++ FN PGS F FLLS RAGG+G+NL
Sbjct: 399 LLDVMEEYLTSKQYRYLRLDGHTSGGDRGALIELFNQPGSPYFIFLLSIRAGGVGVNLQA 220
Query: 996 ADTVIIFDSDWNPQNDLQAMSRAHRIGQREVVNIYRFVTSKSVEEDILERAKKKM 1050
ADTVI+FD+DWNPQ DLQA +RAHRIGQ+ V + RF T ++VEE + A+ K+
Sbjct: 219 ADTVILFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKL 55
>TC229357 weakly similar to UP|Q8VDZ1 (Q8VDZ1) Hells protein, partial (34%)
Length = 1007
Score = 116 bits (290), Expect = 1e-25
Identities = 66/134 (49%), Positives = 88/134 (65%), Gaps = 2/134 (1%)
Frame = +2
Query: 938 DILAQYMSLRGFQFQRLDGSTKSELRQQAMDHFNAPGSDDFCFLLSTRAGGLGINLATAD 997
DIL + + G ++RLDGST+ RQ +D FN S C LLSTRAGG G+NL AD
Sbjct: 188 DILEWTLDVIGLTYKRLDGSTQVAERQTIVDTFNNDTSIFAC-LLSTRAGGQGLNLTGAD 364
Query: 998 TVIIFDSDWNPQNDLQAMSRAHRIGQREVVNIYRFVTSKSVEEDILERAKKKMVLDHLVI 1057
TV+I D D+NPQ D QA R HRIGQ + V IYR VT +V+E++ E AK+K+VLD V+
Sbjct: 365 TVVIHDMDFNPQIDRQAEDRCHRIGQTKPVTIYRLVTKGTVDENVYEIAKRKLVLDAAVL 544
Query: 1058 QKLNA--EGKLEKK 1069
+ + EG++ +K
Sbjct: 545 ESMEEINEGEMPEK 586
>BU761371 similar to GP|8843733|dbj SWI2/SNF2-like protein {Arabidopsis
thaliana}, partial (19%)
Length = 451
Score = 114 bits (285), Expect = 4e-25
Identities = 67/151 (44%), Positives = 91/151 (59%), Gaps = 15/151 (9%)
Frame = +1
Query: 712 TTYEVVLKD-KAVLSKIKWNYLMVDEAHRLKNSEAQLYTALSEFNTKNKLLITGTPLQNS 770
T+YE+ L D K W Y++VDE HRLKNS+ +L AL N +NKLL+TGTPLQN+
Sbjct: 1 TSYEIALNDAKKYFRSYNWKYIVVDEGHRLKNSQCKLVKALKFINVENKLLLTGTPLQNN 180
Query: 771 VEELWALLHFLDSDKFKSKDEFAQNYKNLSSFNENE--------------LSNLHMELRP 816
+ ELW+LL+F+ D F S +EF +++ NLS NE ++ LH LRP
Sbjct: 181 LAELWSLLNFILPDIFASLEEF-ESWFNLSGKCNNEATKEELEEKRRSQVVAKLHAILRP 357
Query: 817 HMLRRVIKDVEKSLPPKIERILRVDMSPLQK 847
+LRR+ DVE LP K E I+ +M+ QK
Sbjct: 358 FLLRRMKSDVEIMLPRKKEIIIYANMTEHQK 450
>TC223271 similar to UP|SN24_HUMAN (P51532) Possible global transcription
activator SNF2L4 (SNF2-beta) (BRG-1 protein) (Mitotic
growth and transcription activator) (Brahma protein
homolog 1), partial (4%)
Length = 483
Score = 110 bits (276), Expect = 4e-24
Identities = 66/157 (42%), Positives = 94/157 (59%), Gaps = 11/157 (7%)
Frame = +3
Query: 719 KDKAVLSKIKWNYLMVDEAHRLKNSEAQLYTAL-SEFNTKNKLLITGTPLQNSVEELWAL 777
+DKA L KI W YL+VDE HRLKN E L L S ++ + +LL+TGTP+QNS++ELW+L
Sbjct: 3 RDKAFLKKIHWLYLIVDEGHRLKNHECALARTLDSGYHIQRRLLLTGTPIQNSLQELWSL 182
Query: 778 LHFLDSDKFKSKDEFAQNYK-------NLSSFNENEL---SNLHMELRPHMLRRVIKDVE 827
L+FL + F S F + ++S +E +L LH +RP +LRR +VE
Sbjct: 183 LNFLLPNIFNSVQNFEDWFNAPFADRVDVSLTDEEQLLIIRRLHQVIRPFILRRKKDEVE 362
Query: 828 KSLPPKIERILRVDMSPLQKQYYKWILERNFRDLNKG 864
K LP K + IL+ D+S QK YY+ + + L+ G
Sbjct: 363 KFLPSKSQVILKCDLSAWQKVYYQQVTDVGRVGLDNG 473
>TC231837 similar to UP|ISWI_DROME (Q24368) Iswi protein (Imitation swi
protein) (Nucleosome remodeling factor 140 kDa subunit)
(NURF-140) (CHRAC 140 kDa subunit), partial (13%)
Length = 788
Score = 110 bits (274), Expect = 7e-24
Identities = 76/219 (34%), Positives = 121/219 (54%), Gaps = 3/219 (1%)
Frame = +1
Query: 992 NLATADTVIIFDSDWNPQNDLQAMSRAHRIGQREVVNIYRFVTSKSVEEDILERAKKKMV 1051
NLATA VI++DSDWNPQ DLQA RAHRIGQ++ V ++RF T ++EE ++ERA KK+
Sbjct: 1 NLATAYVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLA 180
Query: 1052 LDHLVIQKLNAEGKLEKKEAKKGGSFFDKNELSAILRFGAEELFKEERNDEESKKRLLSM 1111
LD LVIQ +G+L +++ +K+EL ++RFGAE +F + +
Sbjct: 181 LDALVIQ----QGRLAEQKT------VNKDELLQMVRFGAEMVFSSK------DSTITDE 312
Query: 1112 DIDEILERAEK-VEEKENGGEQAHELLSAFKVANFCN--DEDDGSFWSRWIKADSVAQAE 1168
DID I+ + E+ E + ++ E FK+ + D DD SR+ V +E
Sbjct: 313 DIDRIIAKGEEATAELDAKMKKFTEDAIKFKMDDTAELYDFDDEKDESRFDIKKIV--SE 486
Query: 1169 NALAPRAARNIKSYAEADQSERSKKRKKKENEPTERIPK 1207
N + P ++Y+E++ +++ ++ RIP+
Sbjct: 487 NWIEPPKRERKRNYSESEYFKQTMRQGGPTKPKEPRIPR 603
>TC232660 weakly similar to UP|Q6M609 (Q6M609) Superfamily II DNA/RNA
helicases, SNF2 family, partial (5%)
Length = 552
Score = 106 bits (264), Expect = 1e-22
Identities = 59/187 (31%), Positives = 101/187 (53%), Gaps = 10/187 (5%)
Frame = +1
Query: 599 KLRDYQLEGLNFLVNSWKNDTNVVLADEMGLGKTVQSVSMLGFL----------QNAQQI 648
+L ++Q EG+ FL +KN+ +L D+MGLGKT+Q+++ L + +N +
Sbjct: 25 RLLEHQREGVRFLYGLYKNNHGGILGDDMGLGKTIQAIAFLAAVFAKEGHSTLNENHVEK 204
Query: 649 HGPFLVVVPLSTLSNWAKEFRKWLPDLNVIVYVGTRSSREVCQQYEFCNEKKAGKQIKFN 708
P L++ P S + NW EF KW + +V +Y G + +K +++
Sbjct: 205 RDPALIICPTSVIHNWESEFSKW-SNFSVSIYHGANRN--------LIYDKLEANEVEI- 354
Query: 709 ALLTTYEVVLKDKAVLSKIKWNYLMVDEAHRLKNSEAQLYTALSEFNTKNKLLITGTPLQ 768
L+T+++ + L I WN +++DEAHRLKN +++LY A E T + +TGT +Q
Sbjct: 355 -LITSFDTYRIHGSSLLDINWNIVIIDEAHRLKNEKSKLYKACLEIKTLRRYGLTGTAMQ 531
Query: 769 NSVEELW 775
N + EL+
Sbjct: 532 NKIMELF 552
>TC220907 weakly similar to UP|Q8NIR3 (Q8NIR3) Related to DNA repair protein
RAD26, partial (10%)
Length = 962
Score = 84.3 bits (207), Expect = 4e-16
Identities = 51/130 (39%), Positives = 74/130 (56%)
Frame = +1
Query: 968 DHFNAPGSDDFCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQREVV 1027
D FN+ S FL+STRAGGLG+NL +A+ V+IFD +WNP DLQA R+ R GQ+ V
Sbjct: 1 DDFNSSPSKQV-FLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKRHV 177
Query: 1028 NIYRFVTSKSVEEDILERAKKKMVLDHLVIQKLNAEGKLEKKEAKKGGSFFDKNELSAIL 1087
++R + + S+EE + R K L ++ + GK+EK+ + D E L
Sbjct: 178 VVFRLLAAGSLEELVYSRQVYKQQLSNIAV-----SGKMEKRYFE---GVQDCKEFQGEL 333
Query: 1088 RFGAEELFKE 1097
FG LF++
Sbjct: 334 -FGISNLFRD 360
>TC231761 similar to UP|O23055 (O23055) YUP8H12.27 protein, partial (14%)
Length = 836
Score = 77.0 bits (188), Expect = 7e-14
Identities = 49/144 (34%), Positives = 76/144 (52%), Gaps = 3/144 (2%)
Frame = +2
Query: 932 YSDFLS--DILAQYMSLRGFQFQRLDGSTKSELRQQAMDHFNAPGSDDFCFLLSTRAGGL 989
+S F S D++ + G +L+GS R A+ F D FL+S +AGG+
Sbjct: 194 FSQFTSFLDLINYSLHKSGVSCVQLNGSMSLAARDAAIKRFTED-PDCKIFLMSLKAGGV 370
Query: 990 GINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQREVVNIYRFVTSKSVEEDILE-RAKK 1048
+NL A V + D WNP + QA R HRIGQ + + I RFV ++EE IL+ + KK
Sbjct: 371 ALNLTVASHVFLMDPWWNPAVERQAQDRIHRIGQYKPIRIVRFVIENTIEERILKLQEKK 550
Query: 1049 KMVLDHLVIQKLNAEGKLEKKEAK 1072
++V + + +A GKL + + +
Sbjct: 551 ELVFEGTIGGSSDALGKLTEADLR 622
>TC228853 similar to UP|O04082 (O04082) Transcription factor RUSH-1alpha
isolog; 18684-24052, partial (24%)
Length = 1393
Score = 71.6 bits (174), Expect = 3e-12
Identities = 40/115 (34%), Positives = 61/115 (52%)
Frame = +2
Query: 938 DILAQYMSLRGFQFQRLDGSTKSELRQQAMDHFNAPGSDDFCFLLSTRAGGLGINLATAD 997
DIL + Q++RLDG+ R +A+ FN + ++S +A LG+N+ A
Sbjct: 752 DILEACLKNSSIQYRRLDGTMSVTARDKAVKDFNTL-PEVSVMIMSLKAASLGLNMVAAC 928
Query: 998 TVIIFDSDWNPQNDLQAMSRAHRIGQREVVNIYRFVTSKSVEEDILERAKKKMVL 1052
V++ D WNP + QA+ RAHRIGQ V + R +VE+ IL +KK +
Sbjct: 929 HVLMLDLWWNPTTEDQAIDRAHRIGQTRPVTVLRLTVRDTVEDRILALQQKKRTM 1093
>TC228722 weakly similar to UP|RAD5_YEAST (P32849) DNA repair protein RAD5,
partial (4%)
Length = 1293
Score = 70.5 bits (171), Expect = 6e-12
Identities = 39/115 (33%), Positives = 61/115 (52%)
Frame = +3
Query: 938 DILAQYMSLRGFQFQRLDGSTKSELRQQAMDHFNAPGSDDFCFLLSTRAGGLGINLATAD 997
D+L + ++RLDG+ R +A+ FN + ++S +A LG+NL A
Sbjct: 552 DLLEACLKNSSINYRRLDGTMSVVARDKAVKDFNTC-PEVTVIIMSLKAASLGLNLVVAC 728
Query: 998 TVIIFDSDWNPQNDLQAMSRAHRIGQREVVNIYRFVTSKSVEEDILERAKKKMVL 1052
V++ D WNP + QA+ RAHRIGQ V + R +VE+ IL+ +KK +
Sbjct: 729 HVLMLDLWWNPTTEDQAIDRAHRIGQTRPVTVLRLTVRDTVEDRILDLQQKKRTM 893
>TC232838 similar to GB|AAP21377.1|30102918|BT006569 At1g47970 {Arabidopsis
thaliana;} , partial (46%)
Length = 902
Score = 62.0 bits (149), Expect = 2e-09
Identities = 40/164 (24%), Positives = 74/164 (44%), Gaps = 2/164 (1%)
Frame = +2
Query: 96 ESGDDSKSGSDYRNEDEFEDNSSEGRGEKLGSEDEDGQKDSGKG--QRGDSDVPAEEMLS 153
+ +D + + ++DE +DN E G +D+D + D +G QRG + ++ S
Sbjct: 323 DDAEDDEDEEEDDDDDEGDDNDDEEDDAPDGGDDDDDEDDEEEGDVQRG-GEPDDDDNDS 499
Query: 154 DDSYGQDGEEQGESVHSRGFRPSTGSNSCLQPTSTNVNRRVHRKSRILDDAEDDDDDADY 213
DD D +E E +G G+ ++P L+ AE+++ +D+
Sbjct: 500 DDDSDDDEDEDEEDEEEQGEEEDLGTEYLIRP---------------LETAEEEEASSDF 634
Query: 214 EEDEPDEDDPDDADFEPATSGRGANKYKDWEGEDSDEVDDSDED 257
E +E E++ +D D E K K + +DSD+ D ++D
Sbjct: 635 EPEENGEEEEEDVDDEDCEKAEAPPKRKRSDKDDSDDDDGGEDD 766
Score = 51.6 bits (122), Expect = 3e-06
Identities = 44/163 (26%), Positives = 73/163 (43%), Gaps = 9/163 (5%)
Frame = +2
Query: 200 ILDDAEDDDDDADYEEDEPDEDDPDDADFEPATSGRGANKYKDWE--------GEDSDEV 251
++DDAEDD+D+ E+D+ DE D +D + + A G + +D E GE D+
Sbjct: 317 VVDDAEDDEDEE--EDDDDDEGDDNDDEEDDAPDGGDDDDDEDDEEEGDVQRGGEPDDDD 490
Query: 252 DDSDEDIDVSDNDDLYFDKKAKGRQRGKFGPSVRSTRDCKAFTASSRQRRVKSSFE-DED 310
+DSD+D D D D+ D++ +G + T ++ + S FE +E+
Sbjct: 491 NDSDDDSD-DDEDEDEEDEEEQGEEED------LGTEYLIRPLETAEEEEASSDFEPEEN 649
Query: 311 ENSTAEDSDSESDEDFKSLKKRGVRVRKNNGRSSAATSFSRPS 353
ED D E E ++ KR + ++ RPS
Sbjct: 650 GEEEEEDVDDEDCEKAEAPPKRKRSDKDDSDDDDGGEDDERPS 778
Score = 50.4 bits (119), Expect = 7e-06
Identities = 48/190 (25%), Positives = 76/190 (39%), Gaps = 1/190 (0%)
Frame = +2
Query: 207 DDDDADYEE-DEPDEDDPDDADFEPATSGRGANKYKDWEGEDSDEVDDSDEDIDVSDNDD 265
++DD +YE DE +D DD D E D EG+D+D D+ D+ D D+DD
Sbjct: 281 EEDDEEYESVDEVVDDAEDDEDEEEDDD--------DDEGDDND--DEEDDAPDGGDDDD 430
Query: 266 LYFDKKAKGRQRGKFGPSVRSTRDCKAFTASSRQRRVKSSFEDEDENSTAEDSDSESDED 325
D++ QRG D+D+N + +DSD + DED
Sbjct: 431 DEDDEEEGDVQRG--------------------------GEPDDDDNDSDDDSDDDEDED 532
Query: 326 FKSLKKRGVRVRKNNGRSSAATSFSRPSNEVRSSSRTIRKVSYVESDESEGADEGTKKSQ 385
+ +++G E + IR + E +E+ E + +
Sbjct: 533 EEDEEEQG-------------------EEEDLGTEYLIRPLETAEEEEASSDFEPEENGE 655
Query: 386 KEEIEVDDGD 395
+EE +VDD D
Sbjct: 656 EEEEDVDDED 685
Score = 35.0 bits (79), Expect = 0.29
Identities = 34/139 (24%), Positives = 55/139 (39%), Gaps = 11/139 (7%)
Frame = +2
Query: 90 SPQNGSESGD--DSKSGSDYRN-EDEFEDNSSEGRGEKLGSEDEDGQKDSGKGQ------ 140
+P G + D D + G R E + +DN S+ + EDE+ +++ G+ +
Sbjct: 404 APDGGDDDDDEDDEEEGDVQRGGEPDDDDNDSDDDSDDDEDEDEEDEEEQGEEEDLGTEY 583
Query: 141 --RGDSDVPAEEMLSDDSYGQDGEEQGESVHSRGFRPSTGSNSCLQPTSTNVNRRVHRKS 198
R EE SD ++GEE+ E V C + + +R
Sbjct: 584 LIRPLETAEEEEASSDFEPEENGEEEEEDV---------DDEDCEKAEAPPKRKR----- 721
Query: 199 RILDDAEDDDDDADYEEDE 217
D +D DDD E+DE
Sbjct: 722 ---SDKDDSDDDDGGEDDE 769
>TC228720 weakly similar to UP|RAD5_YEAST (P32849) DNA repair protein RAD5,
partial (4%)
Length = 736
Score = 59.3 bits (142), Expect = 1e-08
Identities = 29/72 (40%), Positives = 43/72 (59%)
Frame = +3
Query: 981 LLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQREVVNIYRFVTSKSVEE 1040
++S +A LG+NL A V++ D WNP + QA+ RAHRIGQ V + R +VE+
Sbjct: 66 IMSLKAASLGLNLVVACHVLMLDLWWNPTTEDQAIDRAHRIGQTRPVTVLRLTVRDTVED 245
Query: 1041 DILERAKKKMVL 1052
IL +KK ++
Sbjct: 246 RILALQQKKRMM 281
>TC217320 homologue to UP|Q9M378 (Q9M378) TATA box binding protein (TBP)
associated factor (TAF)-like protein, partial (6%)
Length = 947
Score = 58.9 bits (141), Expect = 2e-08
Identities = 26/63 (41%), Positives = 41/63 (64%)
Frame = +2
Query: 1003 DSDWNPQNDLQAMSRAHRIGQREVVNIYRFVTSKSVEEDILERAKKKMVLDHLVIQKLNA 1062
+ DWNP D QAM RAHR+GQ++VVN++R + ++EE ++ + K+ + + VI NA
Sbjct: 5 EHDWNPMRDHQAMDRAHRLGQKKVVNVHRLIMRGTLEEKVMSLQRFKVSVANAVINSENA 184
Query: 1063 EGK 1065
K
Sbjct: 185 SMK 193
>TC232681 weakly similar to GB|AAP21377.1|30102918|BT006569 At1g47970
{Arabidopsis thaliana;} , partial (39%)
Length = 867
Score = 57.0 bits (136), Expect = 7e-08
Identities = 43/161 (26%), Positives = 72/161 (44%)
Frame = +1
Query: 97 SGDDSKSGSDYRNEDEFEDNSSEGRGEKLGSEDEDGQKDSGKGQRGDSDVPAEEMLSDDS 156
S DD D ED+ ED++ +G G+ EDE+ + D +G D D ++ +D
Sbjct: 205 SFDDDDDNED--EEDDDEDDAPDG-GDDDDDEDEEEESDVQRGGEPDDDDNDDD--DEDE 369
Query: 157 YGQDGEEQGESVHSRGFRPSTGSNSCLQPTSTNVNRRVHRKSRILDDAEDDDDDADYEED 216
+D EEQGE G+ ++P T AE+++ +D+E +
Sbjct: 370 DEEDEEEQGEEA-------DLGTEYLIRPLVT---------------AEEEEASSDFEPE 483
Query: 217 EPDEDDPDDADFEPATSGRGANKYKDWEGEDSDEVDDSDED 257
E E++ +D D E K K + +DSD+ D ++D
Sbjct: 484 ENGEEEEEDVDDEDGEKSEAPPKRKRSDKDDSDDDDGGEDD 606
Score = 44.3 bits (103), Expect = 5e-04
Identities = 32/129 (24%), Positives = 55/129 (41%), Gaps = 5/129 (3%)
Frame = +1
Query: 205 EDDDDDADYEEDEPDE-----DDPDDADFEPATSGRGANKYKDWEGEDSDEVDDSDEDID 259
+DDDD+ D E+D+ D+ DD DD D E + + + D + +D DE +D +++ +
Sbjct: 211 DDDDDNEDEEDDDEDDAPDGGDDDDDEDEEEESDVQRGGEPDDDDNDDDDEDEDEEDEEE 390
Query: 260 VSDNDDLYFDKKAKGRQRGKFGPSVRSTRDCKAFTASSRQRRVKSSFEDEDENSTAEDSD 319
+ DL T ++ + S FE E EN E+ D
Sbjct: 391 QGEEADL-------------------GTEYLIRPLVTAEEEEASSDFEPE-ENGEEEEED 510
Query: 320 SESDEDFKS 328
+ ++ KS
Sbjct: 511 VDDEDGEKS 537
Score = 40.8 bits (94), Expect = 0.005
Identities = 43/169 (25%), Positives = 68/169 (39%), Gaps = 24/169 (14%)
Frame = +1
Query: 121 RGEKLGSEDEDGQKDSGKGQRGDSDVPAEEMLSDDSYGQDGEEQGESVHSRGFRPSTGSN 180
R +L +D+D +D + D + A + DD D +E+ ES RG P N
Sbjct: 190 RRRRLSFDDDDDNED----EEDDDEDDAPDGGDDDD---DEDEEEESDVQRGGEPDDDDN 348
Query: 181 SCLQPTSTNVNRRVHRKSRILDDAEDDDDDADYEE--DEPD-------------EDDPDD 225
DD ++D+D+ D EE +E D E++
Sbjct: 349 ---------------------DDDDEDEDEEDEEEQGEEADLGTEYLIRPLVTAEEEEAS 465
Query: 226 ADFEPATSGRGANK-YKDWEGEDSD--------EVDDSDEDIDVSDNDD 265
+DFEP +G + D +GE S+ + DDSD+D D+D+
Sbjct: 466 SDFEPEENGEEEEEDVDDEDGEKSEAPPKRKRSDKDDSDDDDGGEDDDE 612
Score = 40.0 bits (92), Expect = 0.009
Identities = 41/177 (23%), Positives = 63/177 (35%), Gaps = 10/177 (5%)
Frame = +1
Query: 93 NGSESGDDSKSGSDYRNEDEFEDNSSEGRGEKLGS----------EDEDGQKDSGKGQRG 142
N E DD D ++D+ ED E ++ G EDED + +
Sbjct: 226 NEDEEDDDEDDAPDGGDDDDDEDEEEESDVQRGGEPDDDDNDDDDEDEDEEDE------- 384
Query: 143 DSDVPAEEMLSDDSYGQDGEEQGESVHSRGFRPSTGSNSCLQPTSTNVNRRVHRKSRILD 202
EEQGE G+ ++P T
Sbjct: 385 -------------------EEQGEEA-------DLGTEYLIRPLVT-------------- 444
Query: 203 DAEDDDDDADYEEDEPDEDDPDDADFEPATSGRGANKYKDWEGEDSDEVDDSDEDID 259
AE+++ +D+E +E E++ +D D E K K + +DSD+ DD ED D
Sbjct: 445 -AEEEEASSDFEPEENGEEEEEDVDDEDGEKSEAPPKRKRSDKDDSDD-DDGGEDDD 609
Score = 32.7 bits (73), Expect = 1.4
Identities = 28/114 (24%), Positives = 46/114 (39%), Gaps = 16/114 (14%)
Frame = +1
Query: 298 RQRRVKSSFEDEDENSTAE-----------DSDSESDEDFKSLKKRGVRVRKNNGRSSAA 346
R RR + SF+D+D+N E D D + DE+ +S +RG ++
Sbjct: 184 R*RRRRLSFDDDDDNEDEEDDDEDDAPDGGDDDDDEDEEEESDVQRGGEPDDDDNDDDDE 363
Query: 347 TSFSRPSNEV-----RSSSRTIRKVSYVESDESEGADEGTKKSQKEEIEVDDGD 395
E + IR + E +E+ E + ++EE +VDD D
Sbjct: 364 DEDEEDEEEQGEEADLGTEYLIRPLVTAEEEEASSDFEPEENGEEEEEDVDDED 525
>BU545741
Length = 514
Score = 55.1 bits (131), Expect = 3e-07
Identities = 30/77 (38%), Positives = 42/77 (53%)
Frame = -1
Query: 947 RGFQFQRLDGSTKSELRQQAMDHFNAPGSDDFCFLLSTRAGGLGINLATADTVIIFDSDW 1006
+G F R DG + R++ +D FN + L+S + GG+G+NL A V I D
Sbjct: 508 KGIGFLRYDGKLTQKQREKVLDEFNQT-REKRVMLMSLKDGGVGLNLTAASNVFIMDPW* 332
Query: 1007 NPQNDLQAMSRAHRIGQ 1023
NP + QA+ R HRIGQ
Sbjct: 331 NPAVEEQAIMRIHRIGQ 281
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.316 0.133 0.385
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,520,818
Number of Sequences: 63676
Number of extensions: 838194
Number of successful extensions: 7475
Number of sequences better than 10.0: 207
Number of HSP's better than 10.0 without gapping: 5645
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6557
length of query: 1730
length of database: 12,639,632
effective HSP length: 110
effective length of query: 1620
effective length of database: 5,635,272
effective search space: 9129140640
effective search space used: 9129140640
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 66 (30.0 bits)
Medicago: description of AC141111.7