BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC141111.1 - phase: 0 /pseudo
(584 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC234828 66 5e-11
TC220969 similar to UP|Q94IB3 (Q94IB3) WRKY DNA-binding protein,... 37 0.025
TC231640 homologue to UP|Q918P0 (Q918P0) Latency associated anti... 34 0.21
BM731380 33 0.46
CO985160 33 0.46
BE807600 similar to GP|24461867|gb CTV.22 {Poncirus trifoliata},... 32 0.60
TC223507 32 1.0
TC207639 similar to UP|O48592 (O48592) GT2 protein, partial (24%) 31 1.3
TC208668 homologue to UP|Q9NGW8 (Q9NGW8) Developmental protein D... 31 1.8
TC203768 similar to UP|EF1D_ORYSA (P29545) Elongation factor 1-b... 30 2.3
TC230065 similar to UP|O14329 (O14329) SPBC16E9.14c protein, par... 30 2.3
TC220413 similar to UP|Q9LF51 (Q9LF51) Glutamine-rich protein, p... 30 2.3
BM086635 30 3.0
TC235068 30 3.9
TC216570 similar to GB|AAO63420.1|28950993|BT005356 At5g28040 {A... 29 5.1
TC206685 29 6.7
CF922015 29 6.7
BQ453584 homologue to GP|4467439|emb| atrophin-1 {Hylobates lar}... 28 8.7
>TC234828
Length = 857
Score = 65.9 bits (159), Expect = 5e-11
Identities = 83/279 (29%), Positives = 117/279 (41%), Gaps = 13/279 (4%)
Frame = +1
Query: 289 LIAMERVTLVLNVLSLRGRRLLVGFSL*LGLRQKMRIV*SEVLAILIILL*LLLLILVLR 348
LI V L L + ++ +G+ L*+ ++ +* V L+I *+ +I V R
Sbjct: 64 LIPQGAVMLATTTLVVEDQKYPLGYLL*VVQKRLPPTI*YGVSV*LLINY*MYFMIQVPR 243
Query: 349 IALLLSIVFLLWVLSCLI*MERWLSKLQLRVR*LLLSYV*NVLCLCLVVILKWI*FVYL* 408
I L V+ W W L+ * L *+VL L V +L *F YL*
Sbjct: 244 ILSYLMHVWRGWGYVRRSCHMIWWCLLRRASL*PPLGCA*SVL*LLRVDLLWRT*FAYL* 423
Query: 409 VVWM*FWV*TG*S-TITFLLI-----VLASQYISL-------PSRRKVVQSFCLLSS*SN 455
++ M* W G TI+F + L + P++++ + S
Sbjct: 424 LI*M*SWEWIGYLLTISF*TVRRRC*CLVEM*FQVNH*KRMQPTKKRKMFELTWCCSLCM 603
Query: 456 WNAMVS*CFH*WLLYLLRIKQ*LIGYRWCVNFLKFFRMRFLMCLQRGKSSFLLILFLERR 515
W + L+ YRWC NF KFFRM F+ C R K + LL L R
Sbjct: 604 WKRTLK----------------LVVYRWCQNFQKFFRMMFVNCHLREKWNSLLTWCLGRI 735
Query: 516 RSRWHLIVCLLQNYPS*RNSWRTC*KRSLLDQVFHLGER 554
+ R LI CL N *R+ +RT * +L Q H GER
Sbjct: 736 QCRLRLIECLRWN*QR*RHKYRTF*ANNLFVQAHHRGER 852
>TC220969 similar to UP|Q94IB3 (Q94IB3) WRKY DNA-binding protein, partial
(8%)
Length = 677
Score = 37.0 bits (84), Expect = 0.025
Identities = 21/60 (35%), Positives = 39/60 (65%)
Frame = -3
Query: 320 RQKMRIV*SEVLAILIILL*LLLLILVLRIALLLSIVFLLWVLSCLI*MERWLSKLQLRV 379
+ + +I+ S +L ++++LL +LLL+L++ + LL+ + L+ +L C M R KL LRV
Sbjct: 414 QHETQIICSALLLLMLLLLLMLLLLLLMLLLLLMLLSLLMLLLRCQERMNRHDRKLCLRV 235
>TC231640 homologue to UP|Q918P0 (Q918P0) Latency associated antigen, partial
(7%)
Length = 466
Score = 33.9 bits (76), Expect = 0.21
Identities = 18/37 (48%), Positives = 28/37 (75%)
Frame = -1
Query: 330 VLAILIILL*LLLLILVLRIALLLSIVFLLWVLSCLI 366
+L + ++LL LLLL+L+L + LLL ++FLL +L LI
Sbjct: 121 LLLLFLLLLLLLLLLLLLLLLLLLLLLFLLLLLGYLI 11
Score = 30.8 bits (68), Expect = 1.8
Identities = 16/36 (44%), Positives = 27/36 (74%)
Frame = -1
Query: 330 VLAILIILL*LLLLILVLRIALLLSIVFLLWVLSCL 365
+L +L++ L LLLL+L+L + LLL ++ LL++L L
Sbjct: 130 LLLLLLLFLLLLLLLLLLLLLLLLLLLLLLFLLLLL 23
Score = 29.3 bits (64), Expect = 5.1
Identities = 16/36 (44%), Positives = 25/36 (69%)
Frame = -1
Query: 331 LAILIILL*LLLLILVLRIALLLSIVFLLWVLSCLI 366
L +L++L LLLL+L+L + LLL ++ LL L L+
Sbjct: 130 LLLLLLLFLLLLLLLLLLLLLLLLLLLLLLFLLLLL 23
>BM731380
Length = 433
Score = 32.7 bits (73), Expect = 0.46
Identities = 29/63 (46%), Positives = 37/63 (58%)
Frame = +2
Query: 337 LL*LLLLILVLRIALLLSIVFLLWVLSCLI*MERWLSKLQLRVR*LLLSYV*NVLCLCLV 396
LL LLLL+LVL + L L +V LL VL L+ + L L L + LLL VL L LV
Sbjct: 236 LLLLLLLLLVLVLGLYLVLVLLLLVLLLLLVLLLLLQVLLLLLVFLLLL---QVLLLLLV 406
Query: 397 VIL 399
++L
Sbjct: 407 LLL 415
Score = 30.8 bits (68), Expect = 1.8
Identities = 21/54 (38%), Positives = 34/54 (62%)
Frame = +2
Query: 309 LLVGFSL*LGLRQKMRIV*SEVLAILIILL*LLLLILVLRIALLLSIVFLLWVL 362
LL+ L LGL + ++ +L +L++LL L +L+L+L LLL ++ LL VL
Sbjct: 248 LLLLLVLVLGLYLVLVLLLLVLLLLLVLLLLLQVLLLLLVFLLLLQVLLLLLVL 409
>CO985160
Length = 777
Score = 32.7 bits (73), Expect = 0.46
Identities = 32/101 (31%), Positives = 60/101 (58%)
Frame = +3
Query: 272 VRRVML*LIAIVQTLCALIAMERVTLVLNVLSLRGRRLLVGFSL*LGLRQKMRIV*SEVL 331
+R+++L L+ + + L L+ + ++ L+L L R+LL+ L L LR K+ ++ E+
Sbjct: 495 LRKLLLLLLQLRKLLLLLLQLRKLLLLL----LELRKLLL---LLLQLR-KLLLLLLELR 650
Query: 332 AILIILL*LLLLILVLRIALLLSIVFLLWVLSCLI*MERWL 372
+L++ + LLL+L LR LLL + L+ +L L+ + R L
Sbjct: 651 KLLLLHVR*LLLLLQLRKMLLLVLHLLMLLLHLLLLLTRQL 773
Score = 28.5 bits (62), Expect = 8.7
Identities = 39/112 (34%), Positives = 60/112 (52%), Gaps = 2/112 (1%)
Frame = +3
Query: 275 VML*LIAIVQTLCALIAMERVTLVLNVLSLRGRRLLVGFSL*LGLRQKMRIV*S--EVLA 332
++L*L +++ L+ ++ L+L L LR LL L L LR+ + ++ ++L
Sbjct: 369 LLL*LWELLKLR*LLLLLDLRKLLL--LQLRKLLLLDLLLLLLQLRKLLLLLLQLRKLLL 542
Query: 333 ILIILL*LLLLILVLRIALLLSIVFLLWVLSCLI*MERWLSKLQLRVR*LLL 384
+L+ L LLLL+L LR LLL LL + L+ + L L VR*LLL
Sbjct: 543 LLLQLRKLLLLLLELRKLLLL----LLQLRKLLLLLLELRKLLLLHVR*LLL 686
>BE807600 similar to GP|24461867|gb CTV.22 {Poncirus trifoliata}, partial
(4%)
Length = 414
Score = 32.3 bits (72), Expect = 0.60
Identities = 24/56 (42%), Positives = 35/56 (61%)
Frame = -2
Query: 336 ILL*LLLLILVLRIALLLSIVFLLWVLSCLI*MERWLSKLQLRVR*LLLSYV*NVL 391
ILL LLLL+L+L + LLL ++ LL +L + + L + LR+ *LLL + N L
Sbjct: 407 ILLLLLLLLLLLLLLLLLLLLLLLELLPQKLMLHLLLVDILLRIL*LLLLLLGNNL 240
>TC223507
Length = 648
Score = 31.6 bits (70), Expect = 1.0
Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Frame = +1
Query: 341 LLLILVLRIALLLSIVFLLWVLSCLI-*MERWLSKLQLRVR*LLLSYV*NVLCLCLVVIL 399
+L +L + ++FLLWV+SC I * + + VR V L +VV++
Sbjct: 418 VLKFCILLLLTYFPLIFLLWVISCYIC*CYDMMEEESWDVRDAY-----EVALLVVVVLV 582
Query: 400 KWI*FVYL*VVWM 412
KW+ + L +VW+
Sbjct: 583 KWVSWGVLFLVWL 621
>TC207639 similar to UP|O48592 (O48592) GT2 protein, partial (24%)
Length = 1689
Score = 31.2 bits (69), Expect = 1.3
Identities = 16/30 (53%), Positives = 24/30 (79%)
Frame = +2
Query: 330 VLAILIILL*LLLLILVLRIALLLSIVFLL 359
VL +L++LL LLLL+L+L + LLL ++ LL
Sbjct: 377 VLLLLLLLLLLLLLLLLLSLLLLLLLLLLL 466
Score = 31.2 bits (69), Expect = 1.3
Identities = 16/33 (48%), Positives = 26/33 (78%)
Frame = +2
Query: 330 VLAILIILL*LLLLILVLRIALLLSIVFLLWVL 362
V +L++LL LLLL+L+L ++LLL ++ LL +L
Sbjct: 371 VTVLLLLLLLLLLLLLLLLLSLLLLLLLLLLLL 469
Score = 30.4 bits (67), Expect = 2.3
Identities = 16/34 (47%), Positives = 26/34 (76%)
Frame = +2
Query: 333 ILIILL*LLLLILVLRIALLLSIVFLLWVLSCLI 366
++ +LL LLLL+L+L + LLLS++ LL +L L+
Sbjct: 368 MVTVLLLLLLLLLLLLLLLLLSLLLLLLLLLLLL 469
Score = 28.5 bits (62), Expect = 8.7
Identities = 17/37 (45%), Positives = 26/37 (69%)
Frame = +2
Query: 330 VLAILIILL*LLLLILVLRIALLLSIVFLLWVLSCLI 366
+L +L++LL LLLL+L L + LLL ++ L VL L+
Sbjct: 383 LLLLLLLLLLLLLLLLSLLLLLLLLLLLLH*VLYLLL 493
>TC208668 homologue to UP|Q9NGW8 (Q9NGW8) Developmental protein DG1037
(Fragment), partial (4%)
Length = 1021
Score = 30.8 bits (68), Expect = 1.8
Identities = 17/29 (58%), Positives = 22/29 (75%)
Frame = +2
Query: 336 ILL*LLLLILVLRIALLLSIVFLLWVLSC 364
ILL LLLL+L+L + LLL ++ LL VL C
Sbjct: 209 ILLLLLLLLLLLLLLLLLLLLLLLQVLVC 295
Score = 28.9 bits (63), Expect = 6.7
Identities = 14/29 (48%), Positives = 23/29 (79%)
Frame = +2
Query: 328 SEVLAILIILL*LLLLILVLRIALLLSIV 356
S +L +L++LL LLLL+L+L + LLL ++
Sbjct: 203 SFILLLLLLLLLLLLLLLLLLLLLLLQVL 289
>TC203768 similar to UP|EF1D_ORYSA (P29545) Elongation factor 1-beta'
(EF-1-beta'), partial (88%)
Length = 1419
Score = 30.4 bits (67), Expect = 2.3
Identities = 22/60 (36%), Positives = 30/60 (49%)
Frame = +1
Query: 34 RTLRLSKDVMTLMEPRRGLRRLRGFSGLCSARRIRKCGLVLISWPRKLMTGGLLFCLPLS 93
R L L K +MTL+ LR+ +R ++ G +L S PR+ LLFCL LS
Sbjct: 448 RMLLLLKMMMTLISLAMRLRK---------TKRQQRKGRLLRSLPRRKRVANLLFCLTLS 600
>TC230065 similar to UP|O14329 (O14329) SPBC16E9.14c protein, partial (6%)
Length = 610
Score = 30.4 bits (67), Expect = 2.3
Identities = 15/33 (45%), Positives = 21/33 (63%)
Frame = +1
Query: 341 LLLILVLRIALLLSIVFLLWVLSCLI*MERWLS 373
L L L L++ LLLS++FL W L L+ + LS
Sbjct: 202 LTLTLTLQLVLLLSLLFLTWTLFSLLTLSHLLS 300
>TC220413 similar to UP|Q9LF51 (Q9LF51) Glutamine-rich protein, partial (31%)
Length = 761
Score = 30.4 bits (67), Expect = 2.3
Identities = 29/96 (30%), Positives = 51/96 (52%)
Frame = -3
Query: 270 GVVRRVML*LIAIVQTLCALIAMERVTLVLNVLSLRGRRLLVGFSL*LGLRQKMRIV*SE 329
G+ RV + A V+ L + +R + +NV GR G SL L L ++++* +
Sbjct: 522 GIRVRVGSGIGARVRVLLEIEGSDRTQVSVNV----GREARNGGSLLLLLLLLLQLL*EQ 355
Query: 330 VLAILIILL*LLLLILVLRIALLLSIVFLLWVLSCL 365
++ ++ LLL+L+L LLL ++ LL ++ CL
Sbjct: 354 IMLLM------LLLLLLL*QKLLLLLLLLLLLVQCL 265
>BM086635
Length = 428
Score = 30.0 bits (66), Expect = 3.0
Identities = 17/36 (47%), Positives = 27/36 (74%)
Frame = +3
Query: 325 IV*SEVLAILIILL*LLLLILVLRIALLLSIVFLLW 360
IV + +A+L++LL LLLL+L+L + LLL +V +W
Sbjct: 138 IVQRDFVALLLLLL-LLLLLLLLLLLLLLLLVHSVW 242
Score = 28.5 bits (62), Expect = 8.7
Identities = 15/35 (42%), Positives = 25/35 (70%)
Frame = +3
Query: 331 LAILIILL*LLLLILVLRIALLLSIVFLLWVLSCL 365
L +L++LL LLLL+L+L + LL+ V+ +SC+
Sbjct: 162 LLLLLLLLLLLLLLLLLLLLLLVHSVWSQTEMSCV 266
>TC235068
Length = 610
Score = 29.6 bits (65), Expect = 3.9
Identities = 16/36 (44%), Positives = 21/36 (57%)
Frame = +2
Query: 140 PSSWSCRSSTRTILLRMLSSRDVSSSRMV*GPTSRG 175
PSSWS R++TR+ + R SS SS R +RG
Sbjct: 77 PSSWSSRAATRSRMARSQSSSSSSSPRSPARARTRG 184
>TC216570 similar to GB|AAO63420.1|28950993|BT005356 At5g28040 {Arabidopsis
thaliana;} , partial (26%)
Length = 1084
Score = 29.3 bits (64), Expect = 5.1
Identities = 17/33 (51%), Positives = 25/33 (75%)
Frame = +1
Query: 330 VLAILIILL*LLLLILVLRIALLLSIVFLLWVL 362
VLAIL +LL LLLL L+L + L+L+I+ + V+
Sbjct: 346 VLAILHLLLLLLLLTLLLLLLLVLTIITVTVVM 444
>TC206685
Length = 1412
Score = 28.9 bits (63), Expect = 6.7
Identities = 13/32 (40%), Positives = 19/32 (58%)
Frame = -1
Query: 492 RMRFLMCLQRGKSSFLLILFLERRRSRWHLIV 523
RMR+L+C +LF E+R RWHL++
Sbjct: 254 RMRYLLCF---------LLFGEKRFRRWHLVI 186
>CF922015
Length = 172
Score = 28.9 bits (63), Expect = 6.7
Identities = 19/37 (51%), Positives = 21/37 (56%)
Frame = -1
Query: 38 LSKDVMTLMEPRRGLRRLRGFSGLCSARRIRKCGLVL 74
L K VM L R G RLR SG S R IR+C L+L
Sbjct: 133 LLKGVMILRVLRLG*GRLRRSSG*WSVRTIRRCCLLL 23
>BQ453584 homologue to GP|4467439|emb| atrophin-1 {Hylobates lar}, partial
(5%)
Length = 261
Score = 28.5 bits (62), Expect = 8.7
Identities = 20/43 (46%), Positives = 23/43 (52%)
Frame = -3
Query: 29 RRS*RRTLRLSKDVMTLMEPRRGLRRLRGFSGLCSARRIRKCG 71
R+S RR R S+ + RRG RR RGFS L RR CG
Sbjct: 172 RQSPRRAWRRSRGGWSAGSRRRGSRRRRGFSFLW*GRR---CG 53
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.364 0.163 0.577
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,552,725
Number of Sequences: 63676
Number of extensions: 491691
Number of successful extensions: 7835
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 3158
Number of HSP's successfully gapped in prelim test: 368
Number of HSP's that attempted gapping in prelim test: 4132
Number of HSP's gapped (non-prelim): 3987
length of query: 584
length of database: 12,639,632
effective HSP length: 102
effective length of query: 482
effective length of database: 6,144,680
effective search space: 2961735760
effective search space used: 2961735760
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 14 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 36 (21.5 bits)
S2: 62 (28.5 bits)
Medicago: description of AC141111.1