
BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC141110.2 - phase: 0
(262 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC215415 similar to UP|Q6J192 (Q6J192) Fasciclin-like AGP 12, pa... 405 e-114
TC217020 similar to UP|Q6J193 (Q6J193) Fasciclin-like AGP 11, pa... 142 1e-34
TC204373 weakly similar to GB|AAM19981.1|20466119|AY098971 AT5g4... 132 2e-31
TC217373 weakly similar to UP|Q7Y250 (Q7Y250) Arabinogalactan pr... 129 1e-30
TC204370 weakly similar to GB|AAM19981.1|20466119|AY098971 AT5g4... 125 2e-29
TC225286 weakly similar to UP|Q9SP59 (Q9SP59) Arabinogalactan pr... 121 4e-28
TC208218 weakly similar to UP|Q6J189 (Q6J189) Fasciclin-like AGP... 112 1e-25
TC219315 weakly similar to UP|Q6J190 (Q6J190) Fasciclin-like AGP... 100 5e-22
TC227271 similar to GB|AAG24276.1|10880493|AF195889 fasciclin-li... 100 7e-22
TC234339 similar to UP|Q6J196 (Q6J196) Fasciclin-like AGP 8, par... 99 3e-21
TC217021 similar to UP|Q6J193 (Q6J193) Fasciclin-like AGP 11, pa... 89 2e-18
TC217372 weakly similar to UP|Q6J193 (Q6J193) Fasciclin-like AGP... 81 6e-16
TC225828 weakly similar to UP|Q9C5Q6 (Q9C5Q6) Fasciclin-like ara... 75 3e-14
BQ094318 weakly similar to GP|21553523|gb arabinogalactan protei... 75 3e-14
TC216483 similar to UP|FLA1_ARATH (Q9FM65) Fasciclin-like arabin... 74 7e-14
TC227272 similar to GB|AAK55685.1|14190409|AF378882 AT3g60900/T4... 70 1e-12
TC216484 similar to UP|FLA1_ARATH (Q9FM65) Fasciclin-like arabin... 59 2e-09
BE804797 53 1e-07
BG405050 51 6e-07
BI471377 50 8e-07
>TC215415 similar to UP|Q6J192 (Q6J192) Fasciclin-like AGP 12, partial (79%)
Length = 1205
Score = 405 bits (1042), Expect = e-114
Identities = 205/260 (78%), Positives = 234/260 (89%)
Frame = +2
Query: 1 MKVSMIFLVSTLLLLSSSAFAKTVSPPSPPAESPTPAPAPAPTPDFVNLTELLTVAGPFH 60
M+ SMIF+VS ++LL SSAFAKT SPPS SPTPAPAPAP DFVNLTELL+VAGPFH
Sbjct: 224 MEFSMIFIVSNIMLLFSSAFAKTASPPSL---SPTPAPAPAP--DFVNLTELLSVAGPFH 388
Query: 61 TFLQYLQSTKVLDTFQNQANNTEEGITIFVPKDSSFASLKKPSLSKLKDDEIKQVILFHA 120
TFL YL+STKV+DTFQNQANNTEEGITIFVPKDS+F ++KK +LS L +++KQVILFHA
Sbjct: 389 TFLGYLESTKVIDTFQNQANNTEEGITIFVPKDSAFNAIKKTTLSNLTSNQLKQVILFHA 568
Query: 121 LPHFYSLADFKNLSQTASTPTFAGGDYTLNFTDNSGTVKINSGWSITKVTSAVHATDPVA 180
LPHFYSLA+F +LSQT+STPTFAGGDYTLNFTD+SGTV INSGWS TKV+SAVHATDPVA
Sbjct: 569 LPHFYSLAEFTSLSQTSSTPTFAGGDYTLNFTDDSGTVHINSGWSKTKVSSAVHATDPVA 748
Query: 181 IYQVDKVLLPEAIFGTDIPPVLAPAPTPEIAPAADSPTEQSADSKSSSPSSSPDRSSSYK 240
IYQVDKVLLPEAI GT+IPP APAPTP+IAPAADSPTE SADSK+SSPSS+ D SSS+K
Sbjct: 749 IYQVDKVLLPEAILGTNIPPAPAPAPTPDIAPAADSPTEHSADSKASSPSSTHDDSSSHK 928
Query: 241 IVSYGIWGNLVLATFGLVVV 260
++SYGIW NLVLATFG++V+
Sbjct: 929 LISYGIWANLVLATFGVLVL 988
>TC217020 similar to UP|Q6J193 (Q6J193) Fasciclin-like AGP 11, partial (66%)
Length = 815
Score = 142 bits (359), Expect = 1e-34
Identities = 87/235 (37%), Positives = 139/235 (59%), Gaps = 11/235 (4%)
Frame = +3
Query: 37 APAPA-PTPDFVNLTELLTVAGPFHTFLQYLQSTKVLDTFQNQANNTEEGITIFVPKDSS 95
APAPA PT N+T++L AG F TF++ L+++++ D +Q NN+ +G+T+F P D++
Sbjct: 120 APAPAGPT----NITQVLEKAGQFTTFIKLLKASQIADRINSQLNNSNQGLTVFAPTDNA 287
Query: 96 FASLKKPSLSKLKDDEIKQVILFHALPHFYSLADFKNLSQTASTP--TFAG----GDYTL 149
F+SLK +L+ + + Q+I FH LP Y+++ F QTAS P T AG G+Y L
Sbjct: 288 FSSLKAGTLNSINSQDQMQLIQFHILPTLYTISQF----QTASNPLHTQAGNSDDGEYPL 455
Query: 150 NFTDNSGTVKINSGWSITKVTSAVHATDPVAIYQVDKVLLPEAIFGTDIPPVLAPAPTPE 209
N T + V + +G T V++ +++ + +A+YQVDKVLLP +FG +APA +P
Sbjct: 456 NVTTSGNQVNVTTGVVDTTVSNTIYSDNQLAVYQVDKVLLPMKLFG-----AMAPAASPA 620
Query: 210 IAPAADSPTEQ----SADSKSSSPSSSPDRSSSYKIVSYGIWGNLVLATFGLVVV 260
APA P + +ADS S S +S D SS+ + + + G +A +++V
Sbjct: 621 EAPAPTKPEKNVRAGAADSPSGSSDTSADASSAVSLKRHTVEGVTFVAAVVVMIV 785
>TC204373 weakly similar to GB|AAM19981.1|20466119|AY098971 AT5g44130/MLN1_5
{Arabidopsis thaliana;} , partial (60%)
Length = 1283
Score = 132 bits (331), Expect = 2e-31
Identities = 86/252 (34%), Positives = 138/252 (54%), Gaps = 2/252 (0%)
Frame = +3
Query: 10 STLLLLSSSAFAKTVSPPSPPAESPTPAPAPAPTPDFVNLTELLTVAGPFHTFLQYLQST 69
STL+LL+ + F A++ APAP+P+ VNLT +L G + T ++ L+ T
Sbjct: 66 STLILLTLTTFLI--------AQAQAQAPAPSPS-GAVNLTAILEKGGQYTTLMKLLKDT 218
Query: 70 KVLDTFQNQANNTEEGITIFVPKDSSFASLKKPSLSKLKDDEIKQVILFHALPHFYSLAD 129
+ L ++Q + +G T+F P D++F SLK +L+KL DD+ ++ILFH P +Y+++D
Sbjct: 219 QQLTQIESQLKSNSQGFTLFAPTDNAFQSLKPGALNKLSDDQKVKLILFHVTPKYYTISD 398
Query: 130 FKNLSQTAST-PTFAGGDYTLNFTDNSGT-VKINSGWSITKVTSAVHATDPVAIYQVDKV 187
+S T T G + LNFT G V I++G T++ + + P+A+YQVDKV
Sbjct: 399 LLTVSNPVRTQATEKEGTWGLNFTGQGGNQVNISTGVVQTQLNNPLREKFPLAVYQVDKV 578
Query: 188 LLPEAIFGTDIPPVLAPAPTPEIAPAADSPTEQSADSKSSSPSSSPDRSSSYKIVSYGIW 247
LLP +FGT + AP+P+ + +P S S+PS SP +++ ++ G
Sbjct: 579 LLPLELFGTTKTRASSAAPSPK--GSKSTPEIPSVGKAGSAPSDSPKDTNAANGMNVG-- 746
Query: 248 GNLVLATFGLVV 259
FGLV+
Sbjct: 747 -------FGLVL 761
>TC217373 weakly similar to UP|Q7Y250 (Q7Y250) Arabinogalactan protein,
partial (66%)
Length = 982
Score = 129 bits (324), Expect = 1e-30
Identities = 92/261 (35%), Positives = 133/261 (50%), Gaps = 3/261 (1%)
Frame = +2
Query: 1 MKVSMIFLVSTLLLLSSSAFAKTVSPPSPPAESPTPAPAPAPTPDFVNLTELLTVAGPFH 60
MK ++F +S LL++ ++ T P P+P+ APT ++ +L AG F
Sbjct: 65 MKKHLLFSLSLLLMVLFTSAQTT----------PAPSPSSAPT----DIIRILKKAGGFT 202
Query: 61 TFLQYLQSTKVLDTFQNQANNTEEGITIFVPKDSSFASLKKPSLSKLKDDEIKQVILFHA 120
T ++ L +T+V Q N+ G+T+F P D++F SLK L+ L D + ++I FH
Sbjct: 203 TLIRLLTTTQVSTQINAQLLNSNNGLTVFAPNDNAFQSLKPGFLNSLNDQQKNELIQFHV 382
Query: 121 LPHFYSLADFKNLSQTASTPTFAGGD---YTLNFTDNSGTVKINSGWSITKVTSAVHATD 177
LP F S+++F LS T AG D LN T + V + +G T V +V++
Sbjct: 383 LPTFVSISNFDTLSNPVRTQ--AGDDPDRLALNITSSGNQVNLTTGVVNTTVGGSVYSDH 556
Query: 178 PVAIYQVDKVLLPEAIFGTDIPPVLAPAPTPEIAPAADSPTEQSADSKSSSPSSSPDRSS 237
+AIYQVDKVLLP F PP PAP P A A+ SA + PSS+ D S
Sbjct: 557 QLAIYQVDKVLLPRDFFVPKPPP---PAPAPAKAKAS------SAKKSTEGPSSAADNDS 709
Query: 238 SYKIVSYGIWGNLVLATFGLV 258
+ I GIW +L +AT V
Sbjct: 710 A-AISLNGIWLSLSVATIAAV 769
>TC204370 weakly similar to GB|AAM19981.1|20466119|AY098971 AT5g44130/MLN1_5
{Arabidopsis thaliana;} , partial (59%)
Length = 1002
Score = 125 bits (314), Expect = 2e-29
Identities = 83/248 (33%), Positives = 135/248 (53%), Gaps = 6/248 (2%)
Frame = +3
Query: 11 TLLLLSSSAFAKTVSPPSPPAESPTPAPAPAPTPDFVNLTELLTVAGPFHTFLQYLQSTK 70
TL+LL + F A++ APAPAP+ VNLT +L G + T ++ L+ T+
Sbjct: 39 TLILLILTTFLM--------AQTQAQAPAPAPS-GAVNLTAILEKGGQYTTLIKLLKDTQ 191
Query: 71 VLDTFQNQANNTEEGITIFVPKDSSFASLKKPSLSKLKDDEIKQVILFHALPHFYSLADF 130
L ++Q + +G T+F P D++F SLK +L+ L DD+ ++ILFH P +Y+++D
Sbjct: 192 QLTQIESQLKSNSQGFTLFAPTDNAFQSLKPGALNDLSDDKKVKLILFHVTPKYYTISDL 371
Query: 131 KNLSQTAST-PTFAGGDYTLNFTDNSGT-VKINSGWSITKVTSAVHATDPVAIYQVDKVL 188
+S T T G + LNFT G V I++G T++ +A+ P+A+YQVDKVL
Sbjct: 372 LTVSNPVRTQATEEEGTWGLNFTGQGGNQVNISTGVVQTQLNNALREKFPLAVYQVDKVL 551
Query: 189 LPEAIFGTDIPPVLAPAPTPEIAPAADSPTEQSADSKSSSPSSSPDR----SSSYKIVSY 244
LP +FGT + AP+P+ + +P S +PS D+ +++ + V++
Sbjct: 552 LPLELFGTTKTTHSSEAPSPK--GSKSTPEIPSVGKAGGAPSPHGDKKDTNAANGRNVAF 725
Query: 245 GIWGNLVL 252
G+ L L
Sbjct: 726 GLVVGLAL 749
>TC225286 weakly similar to UP|Q9SP59 (Q9SP59) Arabinogalactan protein
Pop14A9, partial (64%)
Length = 1207
Score = 121 bits (303), Expect = 4e-28
Identities = 83/239 (34%), Positives = 125/239 (51%), Gaps = 3/239 (1%)
Frame = +1
Query: 5 MIFLVSTLLLLSSSAFAKTVSPPSPPAESPTPAPAPAPTPDFVNLTELLTVAGPFHTFLQ 64
++F ST L S A A T P+ P+ + PAP P+ P ++ +L AG F T ++
Sbjct: 169 VLFSHSTTTLAQSPAAAPTA--PATPSTAAAPAPVPSAPP--TDIIRILKKAGGFTTLIR 336
Query: 65 YLQSTKVLDTFQNQANNTEEGITIFVPKDSSFASLKKPSLSKLKDDEIKQVILFHALPHF 124
LQ+T+V + +Q T G+T+F P D++F+SLK L+ L D + ++I FH LP +
Sbjct: 337 LLQATQVSNQINSQLLTTSGGLTLFAPNDNAFSSLKPGFLNSLNDQQKNELIQFHLLPTY 516
Query: 125 YSLADFKNLSQTASTPTFAGGD-YTLNFTDNSGTVKINSGWSITKVT--SAVHATDPVAI 181
S+++F LS T D LN T + G ++N + VT V+ +A+
Sbjct: 517 VSVSNFDTLSNPVRTQAGENPDRLALNITSSGGN-QVNMTTGVVNVTLGGTVYTDHQLAV 693
Query: 182 YQVDKVLLPEAIFGTDIPPVLAPAPTPEIAPAADSPTEQSADSKSSSPSSSPDRSSSYK 240
YQVDKVLLP F PPV PAP PE A ++SADS +++ + + S K
Sbjct: 694 YQVDKVLLPRDFFEAK-PPV--PAPAPE---KAKGSKKKSADSTATTADDAESDAISVK 852
>TC208218 weakly similar to UP|Q6J189 (Q6J189) Fasciclin-like AGP 15, partial
(46%)
Length = 1043
Score = 112 bits (281), Expect = 1e-25
Identities = 85/281 (30%), Positives = 140/281 (49%), Gaps = 19/281 (6%)
Frame = +2
Query: 1 MKVSMIFLVSTLLLLSSSAFAKTVSPPSPPAESPTP---APAPAP----------TPDFV 47
MK + +F S LLLSS+ A + +P + P PTP AP+P P +PD V
Sbjct: 65 MKQATLFSFSLFLLLSSTTMAISPAPAAAPKTPPTPKATAPSPKPLVPTLPQSPDSPDSV 244
Query: 48 --NLTELLTVAGPFHTFLQYLQSTKVLDTFQNQANNTEEG-ITIFVPKDSSFASLKKPSL 104
++T +L A F ++ L++T++++ +Q + G ITI P DS+F++LK L
Sbjct: 245 PDDITRILKKAKMFSVLIRLLKTTEIMNNINSQLITAKSGGITILAPDDSAFSNLKAGFL 424
Query: 105 SKLKDDEIKQVILFHALPHFYSLADFKNLSQTASTPTFAGGD---YTLNFTDNSGTVKIN 161
+ L + + +++ FH LP F S ++F +LS T AG D LN +V I+
Sbjct: 425 NSLNEGQKIELVQFHILPEFVSSSNFDSLSNPVQ--TVAGKDPARLPLNVNALGNSVNIS 598
Query: 162 SGWSITKVTSAVHATDPVAIYQVDKVLLPEAIFGTDIPPVLAPAPTPEIAPAADSPTEQS 221
+G V V++ + + IY VDKVLLP F T+ P AP+ +A + + + S
Sbjct: 599 TGVVNATVLGVVYSDNKLGIYHVDKVLLPLDFFITNKAPASAPS---TLAKSPKAAKDNS 769
Query: 222 ADSKSSSPSSSPDRSSSYKIVSYGIWGNLVLATFGLVVVIL 262
++ + ++S + +VS G L+ LV +L
Sbjct: 770 SEDDQEETNQHQNKSGAVSVVSIG-GATLMSLAIALVATML 889
>TC219315 weakly similar to UP|Q6J190 (Q6J190) Fasciclin-like AGP 14, partial
(32%)
Length = 1223
Score = 100 bits (250), Expect = 5e-22
Identities = 92/320 (28%), Positives = 145/320 (44%), Gaps = 58/320 (18%)
Frame = +3
Query: 1 MKVSMIFLVSTLLLLSSSAFAK----------TVSP--PSPPAESPTPA-------PAPA 41
M+ S F++ T +LL + + T SP PSPP P+P PA A
Sbjct: 72 MQESQSFIIPTTILLLALCYTTSGQLSPIQPPTTSPSLPSPPLSQPSPPSPALHSPPATA 251
Query: 42 PTPDF-------------------------VNLTELLTVAGPFHTFLQYLQSTKVLDTFQ 76
P P F +++ ++L A F + L++T++++
Sbjct: 252 PAPGFNTVPLVPVTPSGAPTPTTIIPKGPTIDIVQILRKAKRFSVLTRLLKTTQLINQLN 431
Query: 77 NQ-ANNTEEGITIFVPKDSSFASLKKPSLSKLKDDEIKQVILFHALPHFYSLADFKNLSQ 135
+Q ++ G+T+F P+DS+F+ LK L+ L D + +++ FH L S+++F L+
Sbjct: 432 SQLVTSSSGGLTLFAPEDSAFSKLKAGFLNSLTDRQKVELLQFHTLSSVISISNFDTLTN 611
Query: 136 TASTPTFAGGD---YTLNFTDNSGT-VKINSGWSITKVTSAVHATDPVAIYQVDKVLLPE 191
T AG D LN T G+ V + +G VT V++ + +AIYQVDKVLLP
Sbjct: 612 PVQTQ--AGDDPQRLQLNVTTYGGSQVSMATGAVNASVTGTVYSDNKLAIYQVDKVLLPL 785
Query: 192 AIFGTDIPPVLAPAPTPEIA----PAADSPTEQSADSKSSSPSSSPDRSSSYKIVSYGI- 246
+ + P APAP P +A P AD +AD + + D + VS G
Sbjct: 786 DL----VLPSKAPAPAPALARKGLPKADKGNSTAADDGTVDGNDDSDGKALPAGVSAGCT 953
Query: 247 --WGN--LVLATFGLVVVIL 262
W N +V+ GLV +L
Sbjct: 954 MKWVNNVVVVGVVGLVGGVL 1013
>TC227271 similar to GB|AAG24276.1|10880493|AF195889 fasciclin-like
arabinogalactan protein FLA8 {Arabidopsis thaliana;} ,
partial (75%)
Length = 1213
Score = 100 bits (249), Expect = 7e-22
Identities = 66/207 (31%), Positives = 107/207 (50%), Gaps = 1/207 (0%)
Frame = +2
Query: 28 SPPAESPTPAPAPAPTPDFVNLTELLTVAGPFHTFLQYLQSTKVLDTFQNQANNTEEGIT 87
S P SP AP P+ D VN+T L+ AG TF + S ++ TFQ+ A ++G+T
Sbjct: 170 SAPIISPGILAAPPPSAD-VNITALIEKAG-CKTFASLISSNGLIKTFQSTA---DKGLT 334
Query: 88 IFVPKDSSFASLKKPSLSKLKDDEIKQVILFHALPHFYSLADFKNLSQTASTPTFAG-GD 146
IF P D +F + P LSKL + E+ ++ +HA + + K + +T G G
Sbjct: 335 IFAPNDEAFKAKGVPDLSKLTNAEVVSLLQYHAAAKYLPVGSLKTTKDSINTLASNGAGK 514
Query: 147 YTLNFTDNSGTVKINSGWSITKVTSAVHATDPVAIYQVDKVLLPEAIFGTDIPPVLAPAP 206
+ L + ++ +++G +++ + + P++IY VD VLLP +F P APAP
Sbjct: 515 FDLTVSVAGDSLTLHTGVDSSRIAETILDSTPLSIYSVDSVLLPPELFAKSPSP--APAP 688
Query: 207 TPEIAPAADSPTEQSADSKSSSPSSSP 233
P AP + SP +++ S P+S P
Sbjct: 689 GPVTAP-SPSPVSTPSEAPSPLPASPP 766
Score = 29.6 bits (65), Expect = 1.5
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +2
Query: 21 AKTVSPPSPPAESPTPAPAPAPTP 44
A + SP S P+E+P+P PA P P
Sbjct: 701 APSPSPVSTPSEAPSPLPASPPAP 772
Score = 29.6 bits (65), Expect = 1.5
Identities = 13/32 (40%), Positives = 17/32 (52%)
Frame = +2
Query: 13 LLLSSSAFAKTVSPPSPPAESPTPAPAPAPTP 44
+LL FAK+ SP P P+P+P TP
Sbjct: 635 VLLPPELFAKSPSPAPAPGPVTAPSPSPVSTP 730
Score = 28.9 bits (63), Expect = 2.5
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +2
Query: 25 SPPSPPAESPTPAPAPAPTPD 45
SPP+P E+P APA AP+ +
Sbjct: 758 SPPAPAGETPAGAPADAPSSE 820
Score = 28.1 bits (61), Expect = 4.2
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +2
Query: 15 LSSSAFAKTVSPPSPPAESPTPAPAPAP 42
LS + + PP A+SP+PAPAP P
Sbjct: 611 LSIYSVDSVLLPPELFAKSPSPAPAPGP 694
>TC234339 similar to UP|Q6J196 (Q6J196) Fasciclin-like AGP 8, partial (22%)
Length = 895
Score = 98.6 bits (244), Expect = 3e-21
Identities = 74/246 (30%), Positives = 120/246 (48%), Gaps = 18/246 (7%)
Frame = +3
Query: 33 SPTPAPAPAPTPDFVNLTELLTVAGPFHTFLQYLQSTKVLDTFQNQANNTEEG-ITIFVP 91
+PTP P P+ ++ ++L A F+ FL+ +++T++++ +Q + G +TI P
Sbjct: 6 APTP---PQPSGGTTDIVQVLQQANSFNIFLRLMKTTQLINQLNSQLLTIKSGGLTILAP 176
Query: 92 KDSSFASLKKPSLSKLKDDEIKQVILFHALPHFYSLADFKNLSQTASTPTFAG---GDYT 148
D +F+ LK L+ L D + +++ FH LP F S ++F L T T AG G
Sbjct: 177 DDGAFSELKPGFLNSLSDGKKLELVQFHVLPDFVSASNFDTL--TNPVRTLAGNKPGKVE 350
Query: 149 LNFTDNSGTVKINSGWSITKVTSAVHATDPVAIYQVDKVLLPEAIFGTDIPPVLAPAPTP 208
LN G+V I++G + ++ +A+Y+V KVLLP T P LAPAP
Sbjct: 351 LNVISYGGSVNISTGAVNATMNGVIYTDKHLAVYRVGKVLLPSEFVATTKKP-LAPAPAL 527
Query: 209 EIAPAAD-SPTEQSADSKSSSPSSSPDRSS-------------SYKIVSYGIWGNLVLAT 254
+ AP + ++ + PS P++SS +I G+W +LVL
Sbjct: 528 KPAPVTSANDVAEAPKPEKEKPSPKPEQSSESSTQVVPTVTSGGVRIGVSGMWVSLVL-- 701
Query: 255 FGLVVV 260
GLV V
Sbjct: 702 -GLVFV 716
>TC217021 similar to UP|Q6J193 (Q6J193) Fasciclin-like AGP 11, partial (48%)
Length = 447
Score = 89.4 bits (220), Expect = 2e-18
Identities = 59/155 (38%), Positives = 90/155 (58%), Gaps = 7/155 (4%)
Frame = +1
Query: 5 MIFLVSTLLLLSSSAFAKTVSPPSPPAESPTPAPAPA-PTPDFVNLTELLTVAGPFHTFL 63
M L + L LL + F +T+S APAPA PT N+T++L AG F TF+
Sbjct: 31 MAKLFNFLPLLFLNIFIQTISAQV--------APAPAGPT----NITQVLEKAGQFTTFI 174
Query: 64 QYLQSTKVLDTFQNQANNTEEGITIFVPKDSSFASLKKPSLSKLKDDEIKQVILFHALPH 123
+ L+++++ D +Q NN+ +G+T+F P D++F+SLK +L+ + + Q+I FH LP
Sbjct: 175 KLLKASQIADRINSQLNNSNQGLTVFAPTDNAFSSLKAGTLNSINSQDQMQLIQFHILPT 354
Query: 124 FYSLADFKNLSQTASTP--TFAG----GDYTLNFT 152
Y+++ F QTAS P T AG G+Y LN T
Sbjct: 355 LYTISQF----QTASNPLHTQAGNSDDGEYPLNVT 447
>TC217372 weakly similar to UP|Q6J193 (Q6J193) Fasciclin-like AGP 11, partial
(42%)
Length = 451
Score = 80.9 bits (198), Expect = 6e-16
Identities = 49/146 (33%), Positives = 78/146 (52%)
Frame = +2
Query: 1 MKVSMIFLVSTLLLLSSSAFAKTVSPPSPPAESPTPAPAPAPTPDFVNLTELLTVAGPFH 60
MK +++F +S LL++ ++ TPAP+P+ TP ++ +L AG F
Sbjct: 59 MKKNLLFSLSLLLMVLFTS------------SQTTPAPSPSSTP--TDIIRILKKAGGFT 196
Query: 61 TFLQYLQSTKVLDTFQNQANNTEEGITIFVPKDSSFASLKKPSLSKLKDDEIKQVILFHA 120
T ++ L +T+V Q N+ G+T+F P D++F SLK L+ L D + ++I FH
Sbjct: 197 TLIRLLTTTQVSTQINAQLLNSNNGLTVFAPNDNAFQSLKPGFLNSLNDQQKNELIQFHV 376
Query: 121 LPHFYSLADFKNLSQTASTPTFAGGD 146
LP F S+++F LS T AG D
Sbjct: 377 LPTFVSISNFDTLSNPVRTQ--AGDD 448
>TC225828 weakly similar to UP|Q9C5Q6 (Q9C5Q6) Fasciclin-like
arabinogalactan-protein 2, partial (41%)
Length = 1108
Score = 75.1 bits (183), Expect = 3e-14
Identities = 62/241 (25%), Positives = 108/241 (44%), Gaps = 9/241 (3%)
Frame = +3
Query: 31 AESPTPAPAPAPTPDFVNLTELLTVAGPFHTFLQYLQSTKVLDTFQNQANNTEEGITIFV 90
A S A AP P ++L +++ G F L+ +K L F+ N + G+T+F
Sbjct: 51 AISSADAEAPTAAPSAIDLISIMSKQG-CKAFADLLRGSKALPAFKE---NVDGGLTVFC 218
Query: 91 PKDSSFASLKKPSLSKLKDDEIKQVILFHALPHFYSLADFKNLSQTASTPTFAGGD-YTL 149
P DS+ + P L + + ++L+HA P + SL K+ + +T G + Y
Sbjct: 219 PTDSAISGFA-PKYKNLTEAQKVSLLLYHATPVYESLQMLKSSNGIMNTLATEGANKYDF 395
Query: 150 NFTDNSGTVKINSGWSITKVTSAVHATDPVAIYQVDKVLLPEAIFGTDIPPVLAPAPTPE 209
V + + + + + DP Y++++VL+P +F APA +P+
Sbjct: 396 TVKSEGEDVSLKTKVNTASIVGTLIDQDPFVAYKINRVLMPRELFKASDALDQAPAESPK 575
Query: 210 IAPAADSPTEQSADSKSS-SPSSSP-DRSSSYKIV---SYGIWG---NLVLATFGLVVVI 261
A + + S DS ++ +P+ P D S K S G+ G LV+ FGL++
Sbjct: 576 PAKKKKNAKKGSEDSDAADAPADGPSDDSEDQKAADQDSNGVSGLHVRLVMVLFGLIMGF 755
Query: 262 L 262
L
Sbjct: 756 L 758
>BQ094318 weakly similar to GP|21553523|gb arabinogalactan protein-like
{Arabidopsis thaliana}, partial (45%)
Length = 421
Score = 75.1 bits (183), Expect = 3e-14
Identities = 51/134 (38%), Positives = 73/134 (54%), Gaps = 4/134 (2%)
Frame = +1
Query: 85 GITIFVPKDSSFASLKKPSLSKLKDDEIKQVILFHALPHFYSLADFKNLSQTASTPTFAG 144
G+T+F P+DS+F+ LK L+ L D + +++ FH L F S+++F L+ T AG
Sbjct: 34 GLTLFAPEDSAFSKLKAGFLNSLSDRQKVELLQFHTLSSFISISNFDTLTNPVQTQ--AG 207
Query: 145 GD---YTLNFTDNSGT-VKINSGWSITKVTSAVHATDPVAIYQVDKVLLPEAIFGTDIPP 200
D LN T G+ V + +G VT V+ + +AIYQVDKVLLP + + P
Sbjct: 208 DDPKRLQLNVTTFGGSQVSMATGAVNASVTGTVYTDNKLAIYQVDKVLLPLDL----VLP 375
Query: 201 VLAPAPTPEIAPAA 214
APAP P A A
Sbjct: 376 SEAPAPAPGKAKGA 417
>TC216483 similar to UP|FLA1_ARATH (Q9FM65) Fasciclin-like arabinogalactan
protein 1 precursor, partial (31%)
Length = 1084
Score = 73.9 bits (180), Expect = 7e-14
Identities = 69/223 (30%), Positives = 109/223 (47%), Gaps = 15/223 (6%)
Frame = +2
Query: 27 PSPPAESPTPAPAPAPTPDFVNLTELLTVAGPFHTFLQYLQSTK-VLDTFQNQANNTEEG 85
PS AE APAPAPT NLT +++ G F L + L+TF + N + G
Sbjct: 104 PSAAAE----APAPAPTQQ--NLTNIMSKHG-CKVFADTLSAQPDALNTFND---NLDGG 253
Query: 86 ITIFVPKDSSFASLKKPSLSKLKDDEIKQVILFHALPHFYSLADFKN---LSQTASTPTF 142
+T+F P D +F + P L ++ FHA+P + S A K+ L T +T
Sbjct: 254 LTVFCPLDDAFKAFL-PKFKNLTKSGKAALLEFHAVPVYQSKATLKSNNGLQNTLATDGA 430
Query: 143 AGGDYTLNFTDNSGTVKINSGWSITKVTSAVHATDPVAIYQVDKVLLPEAIFGTDIPPVL 202
D+T+ ++ V + + + K+T + P+AI+ ++KVL P+ +F +
Sbjct: 431 NKFDFTVQ--NDGEDVTLKTKLTTAKITDTLIDEHPLAIFAINKVLXPKELFKGEAE--- 595
Query: 203 APAPTPEIAPAADSPT--------EQSADS---KSSSPSSSPD 234
APAP PE AAD+P +++AD+ S +P+ SPD
Sbjct: 596 APAPAPE-PSAADAPAPAKKGKKKKKAADAPADDSDAPADSPD 721
>TC227272 similar to GB|AAK55685.1|14190409|AF378882 AT3g60900/T4C21_310
{Arabidopsis thaliana;} , partial (30%)
Length = 678
Score = 69.7 bits (169), Expect = 1e-12
Identities = 43/160 (26%), Positives = 79/160 (48%), Gaps = 16/160 (10%)
Frame = +1
Query: 95 SFASLKKPSLSKLKDDEIKQVILFHALPHFYSLADFKNLSQTASTPTFAG-GDYTLNFTD 153
+F + P LSKL + E+ ++ +HA + + K + +T G G + L +
Sbjct: 1 AFKAKGVPDLSKLTNAEVVSLLQYHAAAKYLPVGSLKTTKDSINTLASNGAGKFDLTVSV 180
Query: 154 NSGTVKINSGWSITKVTSAVHATDPVAIYQVDKVLLPEAIFGTDIPPVLAP----APTPE 209
++ +++G +++ + + P++IY VD VLLP+ +F P AP +PTP
Sbjct: 181 AGDSLTLHTGVDSSRIADTILDSSPLSIYSVDSVLLPQELFAKSPSPAPAPESVSSPTPA 360
Query: 210 IAPAADSPT-----------EQSADSKSSSPSSSPDRSSS 238
+P A++P+ E A + + +PSS +RSSS
Sbjct: 361 PSPVAEAPSPFPASPPAPAGESPAGAPAEAPSSEAERSSS 480
Score = 31.6 bits (70), Expect = 0.38
Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 13/45 (28%)
Frame = +1
Query: 13 LLLSSSAFAKTVSP-------------PSPPAESPTPAPAPAPTP 44
+LL FAK+ SP PSP AE+P+P PA P P
Sbjct: 280 VLLPQELFAKSPSPAPAPESVSSPTPAPSPVAEAPSPFPASPPAP 414
Score = 30.0 bits (66), Expect = 1.1
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +1
Query: 25 SPPSPPAESPTPAPAPAPTPD 45
SPP+P ESP APA AP+ +
Sbjct: 400 SPPAPAGESPAGAPAEAPSSE 462
>TC216484 similar to UP|FLA1_ARATH (Q9FM65) Fasciclin-like arabinogalactan
protein 1 precursor, partial (58%)
Length = 1213
Score = 58.9 bits (141), Expect = 2e-09
Identities = 55/187 (29%), Positives = 87/187 (46%), Gaps = 5/187 (2%)
Frame = +3
Query: 27 PSPPAESPTPAPAPAPTPDFVNLTELLTVAGPFHTFLQYLQSTK-VLDTFQNQANNTEEG 85
PS AE APAPAPT NLT +++ G F L + L+TF + N + G
Sbjct: 555 PSAAAE----APAPAPTQQ--NLTNIMSKHG-CKVFADALSAQPDALNTFND---NLDGG 704
Query: 86 ITIFVPKDSSFASLKKPSLSKLKDDEIKQVILFHALPHFYSLADFKN---LSQTASTPTF 142
+T+F P D +F + P L ++ FH +P + S A K+ L T +T
Sbjct: 705 LTVFCPLDDAFKAFL-PKFKNLTKSGKVALLEFHGVPVYQSKATLKSNNGLQNTLATDGA 881
Query: 143 AGGDYTLNFTDNSGTVKINSGWSITKVTSAVHATDPVAIYQVDKVLLPEAIF-GTDIPPV 201
D+T+ ++ V + + + K+T + P+AI+ + KVL P+ +F G + P
Sbjct: 882 NKFDFTVQ--NDGEDVTLKTKLTTAKITDTLIDEQPLAIFAISKVLQPKELFKGGESXPX 1055
Query: 202 LAPAPTP 208
L P
Sbjct: 1056LXRXLLP 1076
Score = 28.1 bits (61), Expect = 4.2
Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Frame = +1
Query: 204 PAPTPEIAPAADSPTEQSADSKSSSPS-SSPDRSSS 238
P+PT +PA+ T S S ++SPS +SP +S++
Sbjct: 97 PSPTRTTSPASSQSTPSSPPSTTTSPSPTSPPKSTA 204
>BE804797
Length = 370
Score = 53.1 bits (126), Expect = 1e-07
Identities = 34/118 (28%), Positives = 62/118 (51%), Gaps = 6/118 (5%)
Frame = +2
Query: 70 KVLDTFQNQANNTEEGITIFVPKDSSFASLKKPSLSKLKDDEIKQVILFHALPHFYSLAD 129
++ D + Q N +++G+T F D +F+SLK +L+ + + Q+I H LP Y+++
Sbjct: 29 QISDRIRYQLNISDQGLTGFALTDHAFSSLKARTLNYINSQDQMQLIQIHILPTLYTISQ 208
Query: 130 FKNLSQTASTP--TFAG----GDYTLNFTDNSGTVKINSGWSITKVTSAVHATDPVAI 181
TAS P T AG G+Y LN V + +G T V++++++ +P +
Sbjct: 209 L----LTASNPLHTQAGNSDDGEYPLNVNTLWNQVNVTTGVVDTTVSNSIYSDNPTCV 370
>BG405050
Length = 418
Score = 50.8 bits (120), Expect = 6e-07
Identities = 35/120 (29%), Positives = 59/120 (49%), Gaps = 22/120 (18%)
Frame = +2
Query: 1 MKVSMIFLVSTLLLLSSSAF-----------AKTVSPPSPPAESPTPAP----------A 39
MK + +F S LLLSS+ A +PP+P A +P+P P +
Sbjct: 65 MKQATLFFFSLFLLLSSTTMAISPAPAAAPKATAKTPPTPKATAPSPKPLVPTIPQSPDS 244
Query: 40 PAPTPDFVNLTELLTVAGPFHTFLQYLQSTKVLDTFQNQANNTEE-GITIFVPKDSSFAS 98
P PD ++T +L A F ++ L++T++++ +Q + GITI P DS+F++
Sbjct: 245 PDSVPD--DITRILKKAKMFSVLIRLLKTTEIMNNINSQLITAKSGGITILAPDDSAFSN 418
>BI471377
Length = 421
Score = 50.4 bits (119), Expect = 8e-07
Identities = 38/120 (31%), Positives = 57/120 (46%), Gaps = 6/120 (5%)
Frame = +2
Query: 133 LSQTASTPTFAGGDYTLNFTDNSGTVKINSGWSITKVTSAVHATDPVAIYQVDKVLLPEA 192
L+ + +PT Y LN T +V I++G +T V+ +AIY VDKVL+P
Sbjct: 14 LTLASDSPT----GYQLNVTAYGNSVNISTGVVNATLTGIVYTDKTLAIYHVDKVLIP-- 175
Query: 193 IFGTDIPPVLAPAPTPEIAPAADSPT------EQSADSKSSSPSSSPDRSSSYKIVSYGI 246
P +APAP AP AD +Q+ +K SS + S + +VS+G+
Sbjct: 176 -LDFSKPKPIAPAPAVAKAPKADKENASAEDDDQAQAAKDSSGAMSLVSTQGTTLVSFGV 352
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.313 0.130 0.369
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,095,574
Number of Sequences: 63676
Number of extensions: 248773
Number of successful extensions: 11355
Number of sequences better than 10.0: 660
Number of HSP's better than 10.0 without gapping: 4747
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9386
length of query: 262
length of database: 12,639,632
effective HSP length: 95
effective length of query: 167
effective length of database: 6,590,412
effective search space: 1100598804
effective search space used: 1100598804
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 58 (26.9 bits)
Medicago: description of AC141110.2