BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC140916.14 - phase: 0 /pseudo
(541 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC213361 similar to UP|NRM6_ARATH (Q9S9N8) Metal transporter Nra... 251 8e-67
TC209111 similar to UP|Q84LR1 (Q84LR1) Root-specific metal trans... 238 7e-63
TC213928 similar to GB|AAM63430.1|21554325|AY086428 metal ion tr... 128 2e-59
TC227457 UP|Q7X9B8 (Q7X9B8) Ferrous ion membrane transport prote... 187 1e-47
BQ611085 similar to GP|21554325|gb metal ion transporter {Arabid... 176 2e-44
TC221971 similar to UP|Q7X9B8 (Q7X9B8) Ferrous ion membrane tran... 152 5e-37
TC218860 similar to UP|NRM2_ARATH (Q9C6B2) Metal transporter Nra... 111 9e-25
AW277420 similar to SP|Q9C6B2|NRM2 Metal transporter Nramp2. [Mo... 85 7e-17
AW201320 37 1e-04
CA801263 weakly similar to PIR|T48349|T48 EIN2 protein - Arabido... 44 2e-04
BM309278 homologue to GP|6468012|gb|A metal transporter Nramp3 {... 37 0.022
TC213991 similar to UP|Q6H976 (Q6H976) STYLOSA protein, partial ... 33 0.32
TC230381 33 0.42
TC220969 similar to UP|Q94IB3 (Q94IB3) WRKY DNA-binding protein,... 32 0.94
CA939026 31 1.2
TC232374 similar to UP|Q9SGQ7 (Q9SGQ7) T23E18.20, partial (5%) 31 1.6
BE330374 31 1.6
TC210901 similar to UP|Q9FZA4 (Q9FZA4) F3H9.4 protein, partial (... 31 1.6
TC233513 31 1.6
CO985160 31 1.6
>TC213361 similar to UP|NRM6_ARATH (Q9S9N8) Metal transporter Nramp6
(AtNramp6), partial (35%)
Length = 558
Score = 251 bits (640), Expect = 8e-67
Identities = 121/186 (65%), Positives = 158/186 (84%)
Frame = +1
Query: 267 RYFLYESGFALFVAFLINVAMISVSGTVCSANDLSGDNVERCNDLTLNSASFLLKNVLGR 326
R+++ ES FAL VAFLIN+ +ISVSGTVC++++L+ ++ C DL LN ASFLL+NVL +
Sbjct: 1 RFYMIESAFALMVAFLINICVISVSGTVCNSSNLNAEDQLSCQDLDLNKASFLLRNVLRK 180
Query: 327 SSSTIYAIALLASGQSSTITGTYAGQYIMQGFLDIRMKRWKRNLMTRCIAIAPSLAVAII 386
SS ++ IALLASGQSSTITGTYAGQY+MQGFLD+R++ W RN++TRC+AI PSL VA+I
Sbjct: 181 WSSKLFGIALLASGQSSTITGTYAGQYVMQGFLDLRLEPWIRNMLTRCLAIVPSLIVAVI 360
Query: 387 GGSSGSSRLIIIASMILSFELPFALIPLLKFSSSSTKMGPHKNSMIIITISWILGFGIIS 446
GGS+G+ +LIIIASMILSFELPFAL+PLLKF+SS TKMG H NS +I ++WI+G +++
Sbjct: 361 GGSAGAGKLIIIASMILSFELPFALVPLLKFTSS*TKMGTHVNSTMISAVTWIIGTLLMA 540
Query: 447 INVYYL 452
IN+YYL
Sbjct: 541 INIYYL 558
>TC209111 similar to UP|Q84LR1 (Q84LR1) Root-specific metal transporter,
partial (22%)
Length = 811
Score = 238 bits (606), Expect = 7e-63
Identities = 117/139 (84%), Positives = 127/139 (91%)
Frame = +3
Query: 403 LSFELPFALIPLLKFSSSSTKMGPHKNSMIIITISWILGFGIISINVYYLSTAFVKWIIH 462
LSFELPFALIPLLKFSSSSTKMGPHKNS+III ISWILG GII INVYYLSTAFV W+IH
Sbjct: 9 LSFELPFALIPLLKFSSSSTKMGPHKNSIIIIVISWILGLGIIGINVYYLSTAFVGWLIH 188
Query: 463 SSLPKVANVFIGIIVFPLMAIYIASVIYLTFRKDTVEMFIETKNDTVMQNQVEKGIVDNG 522
SSLPKVANVFIGIIVFPLMA+Y+A+VIYLTFRKDTV+ +IETKN+ MQ +EKG + NG
Sbjct: 189 SSLPKVANVFIGIIVFPLMALYVAAVIYLTFRKDTVKTYIETKNEPAMQTHMEKGFMANG 368
Query: 523 QLELSHVPYREDLADIPLP 541
QLELS VPYREDLADIPLP
Sbjct: 369 QLELSQVPYREDLADIPLP 425
>TC213928 similar to GB|AAM63430.1|21554325|AY086428 metal ion transporter
{Arabidopsis thaliana;} , partial (34%)
Length = 923
Score = 128 bits (322), Expect(2) = 2e-59
Identities = 70/153 (45%), Positives = 100/153 (64%), Gaps = 1/153 (0%)
Frame = +3
Query: 390 SGSSRLIIIASMILSFELPFALIPLLKFSSSSTKMGPHKNSMIIITISWILGFGIISINV 449
+G+ LIIIASMILSFELPFALIPLLKF+SS KMG H NS+ I I+WI+G I+ IN+
Sbjct: 231 AGAGELIIIASMILSFELPFALIPLLKFTSSKIKMGEHVNSITISAITWIIGSLIMGINI 410
Query: 450 YYLSTAFVKWIIHSSLPKVANVFIGIIVFPLMAIYIASVIYLTFRKDTVEMFIETKNDTV 509
YYL T+FVK ++H L V VF+GI+ F + +Y+ + YL FRK+ +T +
Sbjct: 411 YYLLTSFVKLLLHVHLKIVTKVFLGILGFSGVTLYMGGIAYLVFRKNK-----KTTHFLA 575
Query: 510 MQNQVEKGIV-DNGQLELSHVPYREDLADIPLP 541
+ E+ + + G + + ++P RED+ + LP
Sbjct: 576 FRTSEEQQVANEQGDISMYNLP-REDIVSMQLP 671
Score = 119 bits (298), Expect(2) = 2e-59
Identities = 57/74 (77%), Positives = 67/74 (90%)
Frame = +1
Query: 314 NSASFLLKNVLGRSSSTIYAIALLASGQSSTITGTYAGQYIMQGFLDIRMKRWKRNLMTR 373
N ASFLL+NVLG+ SS ++AIALLASGQSSTITGTYAGQY+MQGFLD+R+K W RNL+TR
Sbjct: 1 NKASFLLRNVLGKWSSKLFAIALLASGQSSTITGTYAGQYVMQGFLDLRLKSWIRNLLTR 180
Query: 374 CIAIAPSLAVAIIG 387
C+AI PSL VA+IG
Sbjct: 181 CLAIVPSLIVALIG 222
>TC227457 UP|Q7X9B8 (Q7X9B8) Ferrous ion membrane transport protein DMT1,
partial (63%)
Length = 1275
Score = 187 bits (475), Expect = 1e-47
Identities = 122/321 (38%), Positives = 182/321 (56%), Gaps = 6/321 (1%)
Frame = +3
Query: 183 LELLITILVFVMAGCFFAEMSYVNPPASGVLKGMFVPKLAGEGAVADAIALLGALIMPHN 242
LE IL+ VMA F P +L G+ +PKL+ + + A+ ++G LIMPHN
Sbjct: 6 LEAFFAILIGVMAISFAWMFGEAKPSGKELLLGVLIPKLSSK-TIQQAVGVVGCLIMPHN 182
Query: 243 LFLHSALVLSRKVPKSVRG-INEACRYFLYESGFALFVAFLINVAMISVSGTVCSANDLS 301
+FLHSALV SR+V +S +G + EA Y+ ES AL V+F+IN+ + +V ++L+
Sbjct: 183 VFLHSALVQSRQVDRSKKGRVQEALNYYSIESTLALVVSFIINIFVTTVFAKGFYGSELA 362
Query: 302 GDNVERCNDLTLNSASFLLKNVLGRSSSTI---YAIALLASGQSSTITGTYAGQYIMQGF 358
N + L +A L+ G I + I LLA+GQSSTITGTYAGQ+IM GF
Sbjct: 363 -------NSIGLVNAGQYLEETYGGGLFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGF 521
Query: 359 LDIRMKRWKRNLMTRCIAIAPSLAVAIIGGSSGSSRLII--IASMILSFELPFALIPLLK 416
L++R+K+W R L+TR AI P++ VA+I +S S ++ +++ S ++PFALIPLL
Sbjct: 522 LNLRLKKWMRALITRSCAIIPTMIVALIFDTSEESLDVLNEWLNVLQSVQIPFALIPLLC 701
Query: 417 FSSSSTKMGPHKNSMIIITISWILGFGIISINVYYLSTAFVKWIIHSSLPKVANVFIGII 476
S MG + ++ T SW++ +I IN Y L+ F +V IG +
Sbjct: 702 LVSKEQIMGTFRIGAVLKTTSWLVAALVIVINGYLLTEFFSS--------EVNGPMIGTV 857
Query: 477 VFPLMAIYIASVIYLTFRKDT 497
V + A Y+A V+YL ++ T
Sbjct: 858 VGAITAAYVAFVVYLIWQAIT 920
>BQ611085 similar to GP|21554325|gb metal ion transporter {Arabidopsis
thaliana}, partial (24%)
Length = 438
Score = 176 bits (447), Expect = 2e-44
Identities = 89/145 (61%), Positives = 107/145 (73%), Gaps = 17/145 (11%)
Frame = +3
Query: 142 EVIGTAFALNILFNIPLWAGVLLTGFSTLLLLSLQRFGVRKLELLITILVFVMAGCFFAE 201
EVIGTAFALN+LFNIP+W GVLLTG STL+LL+LQ++G+RKLE I LVF +AGCF AE
Sbjct: 3 EVIGTAFALNMLFNIPVWIGVLLTGSSTLILLALQQYGIRKLEFFIAFLVFTIAGCFMAE 182
Query: 202 MSYVNPPASGVLKGMFVPKLAGEGAVADAIALLGALIMPHNLFLHSALVLSRKVPKSVRG 261
+ Y P A V+ G+FVPKL G GA AI+LLGA++MPHNLFLHSALVLSRK+P+SVRG
Sbjct: 183 LGYAKPVAKEVVTGLFVPKLQGHGATGLAISLLGAMVMPHNLFLHSALVLSRKIPRSVRG 362
Query: 262 IN-----------------EACRYF 269
I EACR++
Sbjct: 363 IKVREYCERINL*ETAQTMEACRFY 437
>TC221971 similar to UP|Q7X9B8 (Q7X9B8) Ferrous ion membrane transport
protein DMT1, partial (53%)
Length = 835
Score = 152 bits (383), Expect = 5e-37
Identities = 105/275 (38%), Positives = 156/275 (56%), Gaps = 4/275 (1%)
Frame = +2
Query: 227 VADAIALLGALIMPHNLFLHSALVLSRKVPKSVRG-INEACRYFLYESGFALFVAFLINV 285
+ A+ ++G +IMPHN++LHSALV SR+V S +G + EA Y+ ES AL V+F+IN+
Sbjct: 20 IQQAVGVVGCIIMPHNVYLHSALVQSRQVDPSKKGRVQEALNYYSIESTIALIVSFVINI 199
Query: 286 AMISVSGTVCSANDLSGDNVERCNDLTLNSASFLLKNVLGRSSST-IYAIALLASGQSST 344
+ +V + A + + L + ++F K G I+ I LLA+GQSST
Sbjct: 200 FVTTV---LLRAFMVLK*QIALV--L*MQGSTFKKKYGGGLFPILYIWGIGLLAAGQSST 364
Query: 345 ITGTYAGQYIMQGFLDIRMKRWKRNLMTRCIAIAPSLAVAIIGGSSGSSRLII--IASMI 402
ITGTYAGQ+IM GFL++R+K+W R L+TR AI P++ VA+I +S S ++ +++
Sbjct: 365 ITGTYAGQFIMGGFLNLRLKKWIRALITRSFAIIPTIIVALIFDTSEESLDVLNEWLNVL 544
Query: 403 LSFELPFALIPLLKFSSSSTKMGPHKNSMIIITISWILGFGIISINVYYLSTAFVKWIIH 462
S ++PFALIPLL S MG + ++ ISW++ +I IN Y L F
Sbjct: 545 QSVQIPFALIPLLCLVSKEQIMGSFRIGPVLKIISWLVAALVIVINGYLLLEFFSS---- 712
Query: 463 SSLPKVANVFIGIIVFPLMAIYIASVIYLTFRKDT 497
+V +V L A Y+A V+YL R T
Sbjct: 713 ----EVNGAVFATVVCVLTAAYVAFVLYLISRAIT 805
>TC218860 similar to UP|NRM2_ARATH (Q9C6B2) Metal transporter Nramp2
(AtNramp2), partial (30%)
Length = 994
Score = 111 bits (277), Expect = 9e-25
Identities = 64/158 (40%), Positives = 94/158 (58%), Gaps = 2/158 (1%)
Frame = +3
Query: 336 LLASGQSSTITGTYAGQYIMQGFLDIRMKRWKRNLMTRCIAIAPSLAVAIIGGSSGSSRL 395
LLA+GQSSTITGTYAGQ+IM GFL++R+K+W R L+TR AI P++ VAI+ S S
Sbjct: 3 LLAAGQSSTITGTYAGQFIMGGFLNLRLKKWLRALITRSFAIVPTIIVAIVFNRSEGSLD 182
Query: 396 II--IASMILSFELPFALIPLLKFSSSSTKMGPHKNSMIIITISWILGFGIISINVYYLS 453
++ +++ S ++PFALIPLL S MG + ++ ++W + II IN Y L
Sbjct: 183 VLNEWLNVLQSMQIPFALIPLLTLVSKEQIMGTFRVGPVLERVAWTVAGLIIIINGYLLL 362
Query: 454 TAFVKWIIHSSLPKVANVFIGIIVFPLMAIYIASVIYL 491
FV +V + +G++ YIA ++YL
Sbjct: 363 DFFVS--------EVNGILLGLLACSCTTAYIAFIVYL 452
>AW277420 similar to SP|Q9C6B2|NRM2 Metal transporter Nramp2. [Mouse-ear
cress] {Arabidopsis thaliana}, partial (24%)
Length = 396
Score = 85.1 bits (209), Expect = 7e-17
Identities = 47/121 (38%), Positives = 70/121 (57%), Gaps = 1/121 (0%)
Frame = +2
Query: 176 QRFGVRKLELLITILVFVMAGCFFAEMSYVNPPASGVLKGMFVPKLAGEGAVADAIALLG 235
+ +GVRKLE +L+ VM F P +L G+ VP+L G + A+ ++G
Sbjct: 2 ENYGVRKLEAAFAVLIAVMGLSFAWMFGDAQPNREELLMGILVPRL-GSKTIRQAVGVVG 178
Query: 236 ALIMPHNLFLHSALVLSRKV-PKSVRGINEACRYFLYESGFALFVAFLINVAMISVSGTV 294
+IMPHN+FLHSALV S+KV PK + I EA Y+ +S L ++F+IN+ + +V
Sbjct: 179 CVIMPHNVFLHSALVXSKKVDPKKNKSIQEALNYYSIKSSTTLTISFIINLFITTVFTKD 358
Query: 295 C 295
C
Sbjct: 359 C 361
>AW201320
Length = 398
Score = 36.6 bits (83), Expect(2) = 1e-04
Identities = 17/24 (70%), Positives = 19/24 (78%)
Frame = +3
Query: 154 FNIPLWAGVLLTGFSTLLLLSLQR 177
F IP+WA VL+TG STLL L LQR
Sbjct: 327 FPIPVWARVLITGCSTLLFLGLQR 398
Score = 27.3 bits (59), Expect(2) = 1e-04
Identities = 12/13 (92%), Positives = 13/13 (99%)
Frame = +2
Query: 142 EVIGTAFALNILF 154
+VIGTAFALNILF
Sbjct: 290 QVIGTAFALNILF 328
>CA801263 weakly similar to PIR|T48349|T48 EIN2 protein - Arabidopsis
thaliana, partial (6%)
Length = 394
Score = 43.9 bits (102), Expect = 2e-04
Identities = 27/86 (31%), Positives = 48/86 (55%)
Frame = +2
Query: 51 VFVFVLIDRLFVISQFIVETDLQAGANHGYELLWLVLIGLIFALIIQSLAANLGVTTGKH 110
V +LI ++V V T ++ GA G++L+ ++LI A+ Q ++A +G TGK
Sbjct: 98 VVPMLLISTVYVDPGKWVAT-VEDGARFGFDLMAVMLIFNFAAIFCQYISARIGAITGKS 274
Query: 111 LSEVCEVEYPLFVKYCLWLLAEVAVI 136
L+++C EY + L + E++VI
Sbjct: 275 LAQICSDEYDTWTCMLLGVQTELSVI 352
>BM309278 homologue to GP|6468012|gb|A metal transporter Nramp3 {Arabidopsis
thaliana}, partial (12%)
Length = 414
Score = 37.0 bits (84), Expect = 0.022
Identities = 18/34 (52%), Positives = 23/34 (66%)
Frame = +3
Query: 68 VETDLQAGANHGYELLWLVLIGLIFALIIQSLAA 101
+E DLQAGA GY LLWL++ L+IQ L+A
Sbjct: 291 LEGDLQAGAIAGYSLLWLLMWATAMGLLIQLLSA 392
>TC213991 similar to UP|Q6H976 (Q6H976) STYLOSA protein, partial (12%)
Length = 440
Score = 33.1 bits (74), Expect = 0.32
Identities = 15/29 (51%), Positives = 19/29 (64%)
Frame = +3
Query: 6 QQQQQQQQQQQHQVMETSSNHEEP*SWKQ 34
QQQQQQQQQQQ Q + ++P S +Q
Sbjct: 6 QQQQQQQQQQQQQQQQQQQQQQQPQSQQQ 92
Score = 30.8 bits (68), Expect = 1.6
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = +3
Query: 6 QQQQQQQQQQQHQVMETSSNHEEP 29
QQQQQQQQQQQ Q ++ +P
Sbjct: 33 QQQQQQQQQQQQQQPQSQQQQSQP 104
Score = 30.4 bits (67), Expect = 2.1
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = +3
Query: 6 QQQQQQQQQQQHQVMETSSNHEE 28
QQQQQQQQQQQ Q + S ++
Sbjct: 27 QQQQQQQQQQQQQQQQPQSQQQQ 95
Score = 28.9 bits (63), Expect = 6.1
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +3
Query: 6 QQQQQQQQQQQHQVMETSSNHEE 28
QQQQQQQQQQQ Q + ++
Sbjct: 3 QQQQQQQQQQQQQQQQQQQQQQQ 71
Score = 28.9 bits (63), Expect = 6.1
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = +3
Query: 6 QQQQQQQQQQQHQVMETSSNHEE 28
QQQQQQQQQQQ Q + S ++
Sbjct: 42 QQQQQQQQQQQPQSQQQQSQPQQ 110
Score = 28.5 bits (62), Expect = 7.9
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +3
Query: 6 QQQQQQQQQQQHQVMETSSNHEEP*SWKQ 34
QQQQQQQQQQQ Q + ++ S Q
Sbjct: 21 QQQQQQQQQQQQQQQQQQPQSQQQQSQPQ 107
>TC230381
Length = 1316
Score = 32.7 bits (73), Expect = 0.42
Identities = 24/78 (30%), Positives = 38/78 (47%), Gaps = 16/78 (20%)
Frame = +2
Query: 95 IIQSLAANLGVTTGKHLS-EVCEV---------------EYPLFVKYCLWLLAEVAVIAA 138
+++ LA+ +G TTGKHL E+ E+ ++PL K C+ +L +A+
Sbjct: 326 LVKMLASTVG-TTGKHLRREIAEIVFTISNIRDILRHGEKHPLLQKLCIEILTSLALEED 502
Query: 139 DIPEVIGTAFALNILFNI 156
+ GT L LFNI
Sbjct: 503 ATERIGGTGGVLKELFNI 556
>TC220969 similar to UP|Q94IB3 (Q94IB3) WRKY DNA-binding protein, partial
(8%)
Length = 677
Score = 31.6 bits (70), Expect = 0.94
Identities = 13/20 (65%), Positives = 16/20 (80%)
Frame = +1
Query: 6 QQQQQQQQQQQHQVMETSSN 25
QQQQQ QQQQQHQ + ++N
Sbjct: 337 QQQQQHQQQQQHQQQQCAAN 396
Score = 28.9 bits (63), Expect = 6.1
Identities = 12/13 (92%), Positives = 12/13 (92%)
Frame = +1
Query: 6 QQQQQQQQQQQHQ 18
QQQQ QQQQQQHQ
Sbjct: 319 QQQQHQQQQQQHQ 357
>CA939026
Length = 426
Score = 31.2 bits (69), Expect = 1.2
Identities = 15/24 (62%), Positives = 16/24 (66%)
Frame = +3
Query: 6 QQQQQQQQQQQHQVMETSSNHEEP 29
QQQQQQQQQQQ V S N+ P
Sbjct: 246 QQQQQQQQQQQPLVSSNSMNNMNP 317
Score = 28.5 bits (62), Expect = 7.9
Identities = 12/19 (63%), Positives = 16/19 (84%)
Frame = +3
Query: 6 QQQQQQQQQQQHQVMETSS 24
QQQQQQQQQQQ ++ ++S
Sbjct: 243 QQQQQQQQQQQQPLVSSNS 299
>TC232374 similar to UP|Q9SGQ7 (Q9SGQ7) T23E18.20, partial (5%)
Length = 771
Score = 30.8 bits (68), Expect = 1.6
Identities = 22/73 (30%), Positives = 37/73 (50%)
Frame = -3
Query: 385 IIGGSSGSSRLIIIASMILSFELPFALIPLLKFSSSSTKMGPHKNSMIIITISWILGFGI 444
II +SGSS+ S I+S +PF+ SSSS+ M H +++ S+ F +
Sbjct: 328 IISSNSGSSKFRAS*SEIVSLNVPFSARSF*S-SSSSSSMSGHSDTLPTSGSSFATFFFV 152
Query: 445 ISINVYYLSTAFV 457
+ +Y+L F+
Sbjct: 151 VLSFLYFLDCEFL 113
>BE330374
Length = 467
Score = 30.8 bits (68), Expect = 1.6
Identities = 14/30 (46%), Positives = 22/30 (72%)
Frame = +2
Query: 221 LAGEGAVADAIALLGALIMPHNLFLHSALV 250
+ GEGA ++L GA ++PHN +LHS++V
Sbjct: 119 IPGEGAFV-LMSLPGANLVPHNFYLHSSIV 205
>TC210901 similar to UP|Q9FZA4 (Q9FZA4) F3H9.4 protein, partial (10%)
Length = 658
Score = 30.8 bits (68), Expect = 1.6
Identities = 14/27 (51%), Positives = 19/27 (69%)
Frame = +2
Query: 3 NLIQQQQQQQQQQQHQVMETSSNHEEP 29
NL+++QQQQQQQQQ Q S + + P
Sbjct: 539 NLMRKQQQQQQQQQQQTQPNSESLKCP 619
>TC233513
Length = 420
Score = 30.8 bits (68), Expect = 1.6
Identities = 22/73 (30%), Positives = 37/73 (50%)
Frame = -3
Query: 385 IIGGSSGSSRLIIIASMILSFELPFALIPLLKFSSSSTKMGPHKNSMIIITISWILGFGI 444
II +SGSS+ S I+S +PF+ SSSS+ M H +++ + S+ F +
Sbjct: 280 IISSNSGSSKFRAS*SEIVSLNVPFSARSF--*SSSSSSMSGHSDTLSTSSSSFATFFFV 107
Query: 445 ISINVYYLSTAFV 457
+ Y+L F+
Sbjct: 106 VLSFPYFLDCEFL 68
>CO985160
Length = 777
Score = 30.8 bits (68), Expect = 1.6
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = -2
Query: 5 IQQQQQQQQQQQHQVMETSSNH 26
+ QQQQQ QQQHQ M+ H
Sbjct: 770 LSSQQQQQMQQQHQQMQNQQQH 705
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.328 0.141 0.415
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,394,969
Number of Sequences: 63676
Number of extensions: 366752
Number of successful extensions: 6714
Number of sequences better than 10.0: 82
Number of HSP's better than 10.0 without gapping: 4145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5647
length of query: 541
length of database: 12,639,632
effective HSP length: 102
effective length of query: 439
effective length of database: 6,144,680
effective search space: 2697514520
effective search space used: 2697514520
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 61 (28.1 bits)
Medicago: description of AC140916.14