BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC140916.11 - phase: 0
(363 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC231505 similar to UP|Q9FNY7 (Q9FNY7) 8-oxoguanine DNA glycosyl... 418 e-117
TC230046 similar to UP|Q9LU79 (Q9LU79) Gb|AAF21150.1, partial (28%) 34 0.12
TC232122 weakly similar to UP|ME12_ARATH (Q9FK28) Membrin 12 (At... 34 0.12
BQ299355 33 0.16
TC214888 homologue to PIR|C86216|C86216 protein T23G18.6 [import... 33 0.20
BQ296694 similar to GP|14030681|gb| AT3g10030/T22K18_15 {Arabido... 33 0.26
TC209712 similar to GB|AAO63297.1|28950747|BT005233 At2g45360 {A... 33 0.26
TC227291 weakly similar to UP|Q9SFY4 (Q9SFY4) T22C5.20, partial ... 32 0.35
TC229173 32 0.45
BQ453481 similar to GP|17939907|em UL36 protein {Pseudorabies vi... 32 0.45
TC229172 similar to UP|Q8IP68 (Q8IP68) CG31813-PA, partial (8%) 32 0.45
TC216083 similar to UP|Q84P21 (Q84P21) 4-coumarate-CoA ligase-li... 32 0.59
TC213779 similar to UP|Q6FW57 (Q6FW57) Strain CBS138 chromosome ... 32 0.59
TC226636 UP|4CL2_SOYBN (P31687) 4-coumarate--CoA ligase 2 (4CL ... 32 0.59
BI893397 32 0.59
TC218078 similar to UP|Q71VM2 (Q71VM2) Plakoglobin/armadillo/bet... 31 0.77
BU091023 31 0.77
TC203363 similar to UP|Q94K24 (Q94K24) Ran binding protein-1, pa... 31 0.77
TC231605 weakly similar to UP|O49346 (O49346) PP7 , partial (23%) 31 1.0
TC220571 similar to UP|Q8L553 (Q8L553) SCARECROW transcriptional... 31 1.0
>TC231505 similar to UP|Q9FNY7 (Q9FNY7) 8-oxoguanine DNA glycosylase, partial
(65%)
Length = 806
Score = 418 bits (1075), Expect = e-117
Identities = 210/269 (78%), Positives = 230/269 (85%)
Frame = +2
Query: 81 ISLKHLHNGDVCYTLHSQSPSNDDCKTALLDFLNADVSLADTWKVFSDSDERFAELAQHL 140
+SLKHL NGDV Y LHS S S D +TALLDFLNA VSLAD WK FS SD RFAELA HL
Sbjct: 2 VSLKHLQNGDVSYCLHSPSHS-DTAETALLDFLNATVSLADLWKTFSASDARFAELAHHL 178
Query: 141 SGARVLRQDPFECLIQFMCSSNNHISRITKMVDYVSSLGTYLGCVEGFDFHAFPTLNQLS 200
SGARVLRQDPFECLIQF+CSSNN+I RITKMV+YVSSLGT++G V F FHAFP+L QLS
Sbjct: 179 SGARVLRQDPFECLIQFLCSSNNNIGRITKMVNYVSSLGTHVGDVGEFQFHAFPSLEQLS 358
Query: 201 LVSEQQLRDAGFGYRAKYITGTVNVLQSKPEGGEEWLYSLRKLELEDVISELIKLPGVGP 260
VSEQQLRDAGFGYRAKYI GT+N L+SKP GGEEWL SLRK+EL DVIS L LPGVGP
Sbjct: 359 SVSEQQLRDAGFGYRAKYIIGTINALKSKPGGGEEWLRSLRKMELRDVISALCTLPGVGP 538
Query: 261 KVAACIALYSLDQHHAIPVDVHIWRIAQKYILPELAGSKLTQKLHSRVAEAFVTKFGKYA 320
KVAACIAL+SLDQHHA+PVD H+WRIA KY+LPELAGS+LT KL RVAEAFVTK+GKYA
Sbjct: 539 KVAACIALFSLDQHHAVPVDTHVWRIATKYLLPELAGSQLTPKLCDRVAEAFVTKYGKYA 718
Query: 321 GWAQAVLFIAELPSQKAILPSHLRATKQQ 349
WAQ +LFIAELPSQKA+LPSHL KQ+
Sbjct: 719 SWAQTLLFIAELPSQKALLPSHLLTVKQR 805
>TC230046 similar to UP|Q9LU79 (Q9LU79) Gb|AAF21150.1, partial (28%)
Length = 1798
Score = 33.9 bits (76), Expect = 0.12
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = +3
Query: 8 PIKSLPPPLPPSTPPTPHTQTRHST 32
P+KS PP PP PP P RH+T
Sbjct: 777 PVKSTSPPPPPPPPPPPPESARHNT 851
>TC232122 weakly similar to UP|ME12_ARATH (Q9FK28) Membrin 12 (AtMEMB12)
(Golgi SNAP receptor complex member 2-2), partial (26%)
Length = 407
Score = 33.9 bits (76), Expect = 0.12
Identities = 20/45 (44%), Positives = 25/45 (55%), Gaps = 5/45 (11%)
Frame = +2
Query: 12 LPPPLPPSTPPTPH-----TQTRHSTNLSKSRAWIPLNITRQELS 51
LPPPLPPS PTP +T H +N S SR +++ Q LS
Sbjct: 170 LPPPLPPSPAPTPSCRSP*KRTSHRSNPSASRWTDSGDLSPQNLS 304
>BQ299355
Length = 422
Score = 33.5 bits (75), Expect = 0.16
Identities = 25/63 (39%), Positives = 29/63 (45%)
Frame = +2
Query: 8 PIKSLPPPLPPSTPPTPHTQTRHSTNLSKSRAWIPLNITRQELSLPLTFPTGQTFRWKNT 67
PI S PPPLPP+ PTP +T+ S S + P LPL P T N
Sbjct: 2 PIPSHPPPLPPNPTPTPTLTLAPNTSPSPSPSRTP---PLPLWVLPLLPPMAST--CSNA 166
Query: 68 APS 70
APS
Sbjct: 167APS 175
>TC214888 homologue to PIR|C86216|C86216 protein T23G18.6 [imported] -
Arabidopsis thaliana {Arabidopsis thaliana;} , partial
(37%)
Length = 545
Score = 33.1 bits (74), Expect = 0.20
Identities = 20/68 (29%), Positives = 28/68 (40%), Gaps = 12/68 (17%)
Frame = +1
Query: 14 PPLPPSTPPTPHTQTRHSTNLSKSRA---------WIPL---NITRQELSLPLTFPTGQT 61
PP+PP +P T + +T L+ + W+P IT LS P T +
Sbjct: 196 PPIPPGPAASPSTASTSNTTLASKASSRWQISLLIWLPFALPRITTPALSTPFTAISSTR 375
Query: 62 FRWKNTAP 69
W NT P
Sbjct: 376 SPW*NTVP 399
>BQ296694 similar to GP|14030681|gb| AT3g10030/T22K18_15 {Arabidopsis
thaliana}, partial (7%)
Length = 421
Score = 32.7 bits (73), Expect = 0.26
Identities = 24/70 (34%), Positives = 32/70 (45%), Gaps = 5/70 (7%)
Frame = +1
Query: 5 KRSPIKSLPPPLPPSTPPTPHTQTRHSTNLSKSRAWIPL----NITRQELSLPLTFPTGQ 60
+R+ SLPPP PP P+P + R S SK+ P + TR P T T +
Sbjct: 46 RRTTTTSLPPPSPPPCRPSPLPKLRTSPTPSKTTTVAPARSARSATRSVREPPRTDSTTR 225
Query: 61 TF-RWKNTAP 69
R + TAP
Sbjct: 226 DLRRLRRTAP 255
>TC209712 similar to GB|AAO63297.1|28950747|BT005233 At2g45360 {Arabidopsis
thaliana;} , partial (63%)
Length = 873
Score = 32.7 bits (73), Expect = 0.26
Identities = 19/48 (39%), Positives = 25/48 (51%)
Frame = -1
Query: 6 RSPIKSLPPPLPPSTPPTPHTQTRHSTNLSKSRAWIPLNITRQELSLP 53
RSP S PPP P TPP+ ++ T S++ + P R LSLP
Sbjct: 273 RSPATSPPPPFSPRTPPST-SRRAPRTRASRTCEFSPRLNPRSSLSLP 133
>TC227291 weakly similar to UP|Q9SFY4 (Q9SFY4) T22C5.20, partial (7%)
Length = 1393
Score = 32.3 bits (72), Expect = 0.35
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +1
Query: 8 PIKSLPPPLPPSTPPTPHTQ 27
P +PPPLPPS PP P Q
Sbjct: 532 PQPEMPPPLPPSPPPLPQVQ 591
>TC229173
Length = 924
Score = 32.0 bits (71), Expect = 0.45
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +1
Query: 13 PPPLPPSTPPTPHTQTRHSTNLSKSRAWIPLNITRQELS 51
PP P P P T + S+N SR WIP + TR+ L+
Sbjct: 796 PPRTTPRWTPRPTTSSTSSSNS*SSRGWIPSSGTRK*LA 912
>BQ453481 similar to GP|17939907|em UL36 protein {Pseudorabies virus},
partial (0%)
Length = 414
Score = 32.0 bits (71), Expect = 0.45
Identities = 16/32 (50%), Positives = 18/32 (56%)
Frame = +1
Query: 11 SLPPPLPPSTPPTPHTQTRHSTNLSKSRAWIP 42
S PPLPPS P P T T S++L R IP
Sbjct: 256 SRKPPLPPSPPSPPPTLTAPSSDLCHHRRLIP 351
>TC229172 similar to UP|Q8IP68 (Q8IP68) CG31813-PA, partial (8%)
Length = 618
Score = 32.0 bits (71), Expect = 0.45
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +2
Query: 13 PPPLPPSTPPTPHTQTRHSTNLSKSRAWIPLNITRQELS 51
PP P P P T + S+N SR WIP + TR+ L+
Sbjct: 380 PPRTTPRWTPRPTTSSTSSSNS*SSRGWIPSSGTRK*LA 496
>TC216083 similar to UP|Q84P21 (Q84P21) 4-coumarate-CoA ligase-like protein,
partial (80%)
Length = 1411
Score = 31.6 bits (70), Expect = 0.59
Identities = 26/71 (36%), Positives = 33/71 (45%), Gaps = 8/71 (11%)
Frame = +3
Query: 7 SPIKSLP--PPLPPSTPPTPHTQTRHSTNLSKSRAWIPLNITRQELSL------PLTFPT 58
SP+ + P P P S PPTP T S SR+ IP +++ SL P P
Sbjct: 276 SPLCAWPSCPSAPSSPPPTPSTPPAKSP----SRSPIP-SLSSPSRSLIYSPKSPQLHPL 440
Query: 59 GQTFRWKNTAP 69
Q+F W TAP
Sbjct: 441 YQSFSWTTTAP 473
Score = 28.1 bits (61), Expect = 6.5
Identities = 16/38 (42%), Positives = 18/38 (47%)
Frame = +3
Query: 7 SPIKSLPPPLPPSTPPTPHTQTRHSTNLSKSRAWIPLN 44
SP PP P STPP P S + RAW PL+
Sbjct: 102 SPPAPTAPPQPSSTPPPPAASPTPSYGV-PWRAWQPLS 212
>TC213779 similar to UP|Q6FW57 (Q6FW57) Strain CBS138 chromosome D complete
sequence, partial (6%)
Length = 515
Score = 31.6 bits (70), Expect = 0.59
Identities = 27/96 (28%), Positives = 42/96 (43%), Gaps = 10/96 (10%)
Frame = +3
Query: 7 SPIKSLPP-PLPPSTPP-------TPHTQTRHSTNLSK--SRAWIPLNITRQELSLPLTF 56
SP ++PP P PP+T P TP + + STN +R P + R+ S
Sbjct: 3 SPTPTMPPSPPPPTTTPLTESPHRTPSSTSNSSTNFLNVTTRRSRPRSANRRRRSSSTFS 182
Query: 57 PTGQTFRWKNTAPSQYTGVVGSHLISLKHLHNGDVC 92
P+ +T+ ++ V+ S S K +H D C
Sbjct: 183PSLPPSSTSSTSSPRFVLVLDSRCWSFKSVHVLDSC 290
>TC226636 UP|4CL2_SOYBN (P31687) 4-coumarate--CoA ligase 2 (4CL 2)
(4-coumaroyl-CoA synthase 2) (Clone 4CL16) , complete
Length = 1973
Score = 31.6 bits (70), Expect = 0.59
Identities = 13/23 (56%), Positives = 15/23 (64%)
Frame = +3
Query: 7 SPIKSLPPPLPPSTPPTPHTQTR 29
SP+ LP PLP PP PH +TR
Sbjct: 156 SPLLLLPEPLPICPPPLPHRRTR 224
>BI893397
Length = 429
Score = 31.6 bits (70), Expect = 0.59
Identities = 17/36 (47%), Positives = 22/36 (60%)
Frame = +2
Query: 3 KRKRSPIKSLPPPLPPSTPPTPHTQTRHSTNLSKSR 38
KR+R+P PPP PPS P P T + ++ L KSR
Sbjct: 200 KRRRNP----PPPPPPSRSPFPPT*SAPASFLGKSR 295
>TC218078 similar to UP|Q71VM2 (Q71VM2)
Plakoglobin/armadillo/beta-catenin-like protein
(Fragment), partial (88%)
Length = 1310
Score = 31.2 bits (69), Expect = 0.77
Identities = 17/38 (44%), Positives = 21/38 (54%), Gaps = 2/38 (5%)
Frame = +1
Query: 6 RSPIKSLP--PPLPPSTPPTPHTQTRHSTNLSKSRAWI 41
R PI SLP PP PP TPPT +R ++ R W+
Sbjct: 61 RVPIHSLPLPPPPPPLTPPTASPASRRR---NRGRRWL 165
>BU091023
Length = 431
Score = 31.2 bits (69), Expect = 0.77
Identities = 18/51 (35%), Positives = 25/51 (48%)
Frame = +2
Query: 8 PIKSLPPPLPPSTPPTPHTQTRHSTNLSKSRAWIPLNITRQELSLPLTFPT 58
P++ PP PP+TP P SKS IPL+ Q ++P +PT
Sbjct: 38 PMEGEAPPPPPTTPLVP-------PGSSKSEKRIPLHHPPQLRAMPAAYPT 169
>TC203363 similar to UP|Q94K24 (Q94K24) Ran binding protein-1, partial (68%)
Length = 1089
Score = 31.2 bits (69), Expect = 0.77
Identities = 21/65 (32%), Positives = 33/65 (50%)
Frame = -3
Query: 242 KLELEDVISELIKLPGVGPKVAACIALYSLDQHHAIPVDVHIWRIAQKYILPELAGSKLT 301
+L LE IS++ +P G V + + Q+ I D+ R+ + P LAGS +
Sbjct: 472 ELVLEFTISKIPSMPNAGFLVPSVLLHTHRRQNEMISADLE--RLGLPHEKPNLAGSLML 299
Query: 302 QKLHS 306
Q+LHS
Sbjct: 298 QELHS 284
>TC231605 weakly similar to UP|O49346 (O49346) PP7 , partial (23%)
Length = 516
Score = 30.8 bits (68), Expect = 1.0
Identities = 29/102 (28%), Positives = 40/102 (38%), Gaps = 8/102 (7%)
Frame = +2
Query: 14 PPLPPSTPPTPHTQTRHSTNLSKSRAWIPLNITRQELSLPLTFPTGQTFRW--KNTAPSQ 71
PP PP PTP + R W P + LS+ + F W +N PS+
Sbjct: 98 PPSPPPPHPTPPPELRVPI-------WWPED---GNLSMDWVDNLMRCFDWSSRNVPPSE 247
Query: 72 YTGVV------GSHLISLKHLHNGDVCYTLHSQSPSNDDCKT 107
V+ L++ K LH C T+ PS+DD T
Sbjct: 248 LPSVLPVGVFDSLILVASKMLHKEPNCVTVDPFRPSSDDDNT 373
>TC220571 similar to UP|Q8L553 (Q8L553) SCARECROW transcriptional
regulator-like, partial (32%)
Length = 569
Score = 30.8 bits (68), Expect = 1.0
Identities = 20/53 (37%), Positives = 25/53 (46%), Gaps = 4/53 (7%)
Frame = -1
Query: 21 PPTPHTQTR----HSTNLSKSRAWIPLNITRQELSLPLTFPTGQTFRWKNTAP 69
P T H TR H+T L R ++TR EL + L+FPT N AP
Sbjct: 251 PNTSHRSTRSLPSHATELCNFRLSPSSSLTRSELLMLLSFPTVVASMDSNNAP 93
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.318 0.133 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,031,971
Number of Sequences: 63676
Number of extensions: 300322
Number of successful extensions: 7322
Number of sequences better than 10.0: 183
Number of HSP's better than 10.0 without gapping: 4519
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6517
length of query: 363
length of database: 12,639,632
effective HSP length: 98
effective length of query: 265
effective length of database: 6,399,384
effective search space: 1695836760
effective search space used: 1695836760
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)
Medicago: description of AC140916.11