BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC140916.1 - phase: 0
(108 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BG239594 similar to PIR|T47764|T477 responce reactor 4 - Arabido... 94 8e-21
TC233853 similar to UP|Q71BZ2 (Q71BZ2) Type-A response regulator... 91 1e-19
TC226685 similar to UP|Q9FRY9 (Q9FRY9) Response regulator 6, par... 69 3e-13
TC226682 similar to UP|O80366 (O80366) Responce reactor4 (AT3g57... 65 5e-12
TC227924 similar to UP|Q71BZ4 (Q71BZ4) Type-A response regulator... 63 2e-11
BM527175 similar to GP|11870065|gb response regulator 15 {Arabid... 63 2e-11
BM270854 62 4e-11
BF424305 similar to PIR|T06673|T066 response reactor 2 [imported... 59 5e-10
TC221088 similar to UP|Q71BZ3 (Q71BZ3) Type-A response regulator... 59 5e-10
TC228371 similar to UP|Q9AXD7 (Q9AXD7) Response regulator protei... 58 6e-10
TC228370 similar to UP|Q9AXD7 (Q9AXD7) Response regulator protei... 57 1e-09
TC229270 similar to PIR|T48853|T48853 response reactor 3 [import... 57 2e-09
BG882852 homologue to PIR|T50854|T508 response regulator 7 [impo... 39 5e-04
TC228019 similar to UP|Q9C5T8 (Q9C5T8) Cytokinin receptor CRE1b,... 35 0.007
BU760906 28 0.67
BU964842 28 0.88
CO979010 27 1.1
TC230782 similar to UP|Q9C5U1 (Q9C5U1) Histidine kinase, partial... 27 1.1
TC214126 homologue to UP|ERF4_ARATH (O80340) Ethylene responsive... 27 1.5
BE661800 27 1.5
>BG239594 similar to PIR|T47764|T477 responce reactor 4 - Arabidopsis
thaliana, partial (17%)
Length = 421
Score = 94.4 bits (233), Expect = 8e-21
Identities = 51/67 (76%), Positives = 57/67 (84%), Gaps = 3/67 (4%)
Frame = +2
Query: 5 LDSRKLQLQPQNLKQE---HFHVLAVDDSVIDRMLLERLLRDSSCKVTCVDSGDKALKYL 61
+D+RKLQLQ Q Q+ HFHVLAVDDSVIDR LL+RLLR S+CKVTCVDSGDKALKYL
Sbjct: 221 VDTRKLQLQHQQQLQQQPQHFHVLAVDDSVIDRKLLKRLLRGSTCKVTCVDSGDKALKYL 400
Query: 62 GLNIDEI 68
GL IDE+
Sbjct: 401 GL-IDEL 418
>TC233853 similar to UP|Q71BZ2 (Q71BZ2) Type-A response regulator, partial
(46%)
Length = 856
Score = 90.5 bits (223), Expect = 1e-19
Identities = 50/78 (64%), Positives = 63/78 (80%)
Frame = +1
Query: 1 MELGLDSRKLQLQPQNLKQEHFHVLAVDDSVIDRMLLERLLRDSSCKVTCVDSGDKALKY 60
MEL ++S+KL+ Q+ +Q+HFHVL VDDSVIDR LLERLLRDSSCK T VDSGDKALK+
Sbjct: 133 MEL-VNSQKLK---QHEQQQHFHVLVVDDSVIDRKLLERLLRDSSCKATFVDSGDKALKF 300
Query: 61 LGLNIDEISSTKSSILES 78
LGL D++ ++ S+ ES
Sbjct: 301 LGLLDDDLDNSSSTSSES 354
>TC226685 similar to UP|Q9FRY9 (Q9FRY9) Response regulator 6, partial (42%)
Length = 1190
Score = 69.3 bits (168), Expect = 3e-13
Identities = 37/77 (48%), Positives = 54/77 (70%)
Frame = +1
Query: 19 QEHFHVLAVDDSVIDRMLLERLLRDSSCKVTCVDSGDKALKYLGLNIDEISSTKSSILES 78
+ FHVLAVDDS+IDR L+ERLLR SS +VT VDSG KAL++LGL ++ S+ + S
Sbjct: 355 ESQFHVLAVDDSIIDRKLIERLLRTSSYQVTTVDSGSKALEFLGLRENDESNPS---IPS 525
Query: 79 SSPSLPQPLQLQEVIIL 95
P+ QP +++ +++
Sbjct: 526 VCPNNHQPQEVEVNLVI 576
>TC226682 similar to UP|O80366 (O80366) Responce reactor4
(AT3g57040/F24I3_120), partial (60%)
Length = 1343
Score = 65.1 bits (157), Expect = 5e-12
Identities = 32/45 (71%), Positives = 38/45 (84%)
Frame = +3
Query: 19 QEHFHVLAVDDSVIDRMLLERLLRDSSCKVTCVDSGDKALKYLGL 63
+ FHVLAVDDS+IDR L+ERLLR SS +VT VDSG KAL++LGL
Sbjct: 372 ESQFHVLAVDDSLIDRKLIERLLRTSSYEVTTVDSGSKALEFLGL 506
>TC227924 similar to UP|Q71BZ4 (Q71BZ4) Type-A response regulator, partial
(50%)
Length = 994
Score = 62.8 bits (151), Expect = 2e-11
Identities = 31/53 (58%), Positives = 42/53 (78%)
Frame = +1
Query: 23 HVLAVDDSVIDRMLLERLLRDSSCKVTCVDSGDKALKYLGLNIDEISSTKSSI 75
HVLAVDDS +DR ++ERLL+ SSCKVT V+SG +AL+YLGL+ ++ S S+
Sbjct: 211 HVLAVDDSHVDRKVIERLLKISSCKVTVVESGSRALQYLGLDGEKSSIGLDSV 369
>BM527175 similar to GP|11870065|gb response regulator 15 {Arabidopsis
thaliana}, partial (49%)
Length = 421
Score = 62.8 bits (151), Expect = 2e-11
Identities = 29/41 (70%), Positives = 37/41 (89%)
Frame = +2
Query: 23 HVLAVDDSVIDRMLLERLLRDSSCKVTCVDSGDKALKYLGL 63
HVLAVDDS++DR ++ERLL+ SSCKVT V+SG +AL+YLGL
Sbjct: 137 HVLAVDDSLVDRKVIERLLKISSCKVTVVESGTRALQYLGL 259
>BM270854
Length = 397
Score = 62.0 bits (149), Expect = 4e-11
Identities = 32/52 (61%), Positives = 41/52 (78%)
Frame = +1
Query: 23 HVLAVDDSVIDRMLLERLLRDSSCKVTCVDSGDKALKYLGLNIDEISSTKSS 74
HVLAVDDS++DR ++ERLL+ S+CKVT VDSG +AL++LGL DE T S
Sbjct: 100 HVLAVDDSLVDRKVIERLLKISACKVTAVDSGIRALQFLGL--DEQRRTSES 249
>BF424305 similar to PIR|T06673|T066 response reactor 2 [imported] -
Arabidopsis thaliana, partial (44%)
Length = 265
Score = 58.5 bits (140), Expect = 5e-10
Identities = 27/45 (60%), Positives = 37/45 (82%)
Frame = +2
Query: 19 QEHFHVLAVDDSVIDRMLLERLLRDSSCKVTCVDSGDKALKYLGL 63
+ + HVL V DS++DR ++ERLL+ SSCKVT V+SG +AL+YLGL
Sbjct: 14 RHNLHVLVVYDSLVDRKVIERLLKISSCKVTVVESGTRALQYLGL 148
>TC221088 similar to UP|Q71BZ3 (Q71BZ3) Type-A response regulator, partial
(75%)
Length = 874
Score = 58.5 bits (140), Expect = 5e-10
Identities = 27/41 (65%), Positives = 36/41 (86%)
Frame = +3
Query: 23 HVLAVDDSVIDRMLLERLLRDSSCKVTCVDSGDKALKYLGL 63
HVLAVDD++IDR L+E+LLR+SSCKVT ++G +AL+ LGL
Sbjct: 216 HVLAVDDNLIDRKLVEKLLRNSSCKVTTAENGPRALELLGL 338
>TC228371 similar to UP|Q9AXD7 (Q9AXD7) Response regulator protein, partial
(53%)
Length = 1068
Score = 58.2 bits (139), Expect = 6e-10
Identities = 29/50 (58%), Positives = 39/50 (78%)
Frame = +2
Query: 18 KQEHFHVLAVDDSVIDRMLLERLLRDSSCKVTCVDSGDKALKYLGLNIDE 67
+ E HVLAVDDS++DR ++E LL+ +CKVT VDSG +AL+ LGL +DE
Sbjct: 104 QSEEVHVLAVDDSIVDRKVIEHLLKVLACKVTAVDSGLRALQLLGL-LDE 250
>TC228370 similar to UP|Q9AXD7 (Q9AXD7) Response regulator protein, partial
(48%)
Length = 877
Score = 57.0 bits (136), Expect = 1e-09
Identities = 29/50 (58%), Positives = 38/50 (76%)
Frame = +2
Query: 18 KQEHFHVLAVDDSVIDRMLLERLLRDSSCKVTCVDSGDKALKYLGLNIDE 67
+ E HVLAVDDS +DR ++E LL+ +CKVT VDSG +AL+ LGL +DE
Sbjct: 119 QSEEVHVLAVDDSTVDRKVIEHLLKVLACKVTAVDSGLRALQLLGL-LDE 265
>TC229270 similar to PIR|T48853|T48853 response reactor 3 [imported] -
Arabidopsis thaliana {Arabidopsis thaliana;} , partial
(62%)
Length = 752
Score = 56.6 bits (135), Expect = 2e-09
Identities = 28/37 (75%), Positives = 32/37 (85%)
Frame = +3
Query: 27 VDDSVIDRMLLERLLRDSSCKVTCVDSGDKALKYLGL 63
VDDS+IDRML+ERLL+ SS VT VDSG KALK+LGL
Sbjct: 3 VDDSLIDRMLIERLLKTSSFHVTAVDSGSKALKFLGL 113
>BG882852 homologue to PIR|T50854|T508 response regulator 7 [imported] -
Arabidopsis thaliana, partial (13%)
Length = 189
Score = 38.5 bits (88), Expect = 5e-04
Identities = 21/45 (46%), Positives = 27/45 (59%)
Frame = +2
Query: 2 ELGLDSRKLQLQPQNLKQEHFHVLAVDDSVIDRMLLERLLRDSSC 46
E+ S K L+ VLAVDDS++DR ++ERLLR SSC
Sbjct: 53 EIFRQSIKEMLEESPSGAPELQVLAVDDSLVDRKVIERLLRISSC 187
>TC228019 similar to UP|Q9C5T8 (Q9C5T8) Cytokinin receptor CRE1b, partial
(21%)
Length = 1344
Score = 34.7 bits (78), Expect = 0.007
Identities = 16/40 (40%), Positives = 25/40 (62%)
Frame = +3
Query: 24 VLAVDDSVIDRMLLERLLRDSSCKVTCVDSGDKALKYLGL 63
+L VDD+V++R + L++ VTC +SG AL+ L L
Sbjct: 507 ILVVDDNVVNRRVAAGALKNFGADVTCAESGKTALEMLQL 626
>BU760906
Length = 445
Score = 28.1 bits (61), Expect = 0.67
Identities = 19/52 (36%), Positives = 25/52 (47%)
Frame = +1
Query: 24 VLAVDDSVIDRMLLERLLRDSSCKVTCVDSGDKALKYLGLNIDEISSTKSSI 75
VLAVDD I +LE LLR VT + +AL L N ++ S +
Sbjct: 256 VLAVDDDPICLKVLENLLRKCQYHVTTTNQAVEALTMLRENRNKFDLVISDV 411
>BU964842
Length = 405
Score = 27.7 bits (60), Expect = 0.88
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = -1
Query: 45 SCKVTCVDSGDKALKYLGLNIDEISSTKSSILESSSPSLP 84
SCKVT ++ G+K +K + L I TKS I S P
Sbjct: 264 SCKVTTLEKGEKKVKEVMLGIIRHLFTKSIIFRCPHDS*P 145
>CO979010
Length = 712
Score = 27.3 bits (59), Expect = 1.1
Identities = 25/69 (36%), Positives = 33/69 (47%)
Frame = +1
Query: 36 LLERLLRDSSCKVTCVDSGDKALKYLGLNIDEISSTKSSILESSSPSLPQPLQLQEVIIL 95
LL L SS ++C S A+ L + +ISS +SIL SSS S L + +
Sbjct: 268 LLLSLSSSSSINLSCSSSSLLAIISLRFSSLKISSKPASILSSSSSS----TNLLGL*LK 435
Query: 96 IFFFLILKS 104
IF LKS
Sbjct: 436 IFLITFLKS 462
>TC230782 similar to UP|Q9C5U1 (Q9C5U1) Histidine kinase, partial (14%)
Length = 869
Score = 27.3 bits (59), Expect = 1.1
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +1
Query: 24 VLAVDDSVIDRMLLERLLRDSSCKVTCVDSGDKALKYL 61
+L VDD+ ++R + L+ V CV SG A+ L
Sbjct: 472 ILIVDDNGVNRAVAAGALKKYGADVVCVSSGKDAISSL 585
>TC214126 homologue to UP|ERF4_ARATH (O80340) Ethylene responsive element
binding factor 4 (AtERF4), partial (36%)
Length = 989
Score = 26.9 bits (58), Expect = 1.5
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = +2
Query: 64 NIDEISSTKSSILESSSPSLPQPLQL 89
NI+ S +++S L+SSSP P PL L
Sbjct: 362 NINARSPSQTSTLDSSSPPPPPPLDL 439
>BE661800
Length = 713
Score = 26.9 bits (58), Expect = 1.5
Identities = 18/52 (34%), Positives = 24/52 (45%)
Frame = +1
Query: 24 VLAVDDSVIDRMLLERLLRDSSCKVTCVDSGDKALKYLGLNIDEISSTKSSI 75
VLAVDD +LE LLR VT + AL+ L N ++ S +
Sbjct: 403 VLAVDDDKTCLTVLENLLRKCQYNVTTTNQAIXALEMLRKNRNKFDLXISDV 558
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.322 0.139 0.376
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,563,995
Number of Sequences: 63676
Number of extensions: 56591
Number of successful extensions: 420
Number of sequences better than 10.0: 65
Number of HSP's better than 10.0 without gapping: 419
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 419
length of query: 108
length of database: 12,639,632
effective HSP length: 84
effective length of query: 24
effective length of database: 7,290,848
effective search space: 174980352
effective search space used: 174980352
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)
Medicago: description of AC140916.1