BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC140913.13 + phase: 0 /pseudo
(676 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC213439 201 9e-52
TC230774 similar to UP|Q945L6 (Q945L6) AT3g11590/F24K9_26, parti... 186 3e-47
BI316130 135 8e-32
BU927326 91 1e-18
TC203786 86 4e-17
TC220965 72 6e-13
TC213530 similar to UP|Q7TP80 (Q7TP80) Aa2-166, partial (7%) 50 2e-06
TC231795 similar to UP|Q6K230 (Q6K230) Intracellular protein tra... 50 4e-06
CO983198 45 8e-05
BM528393 43 5e-04
TC230862 39 0.008
TC228989 similar to UP|Q9LSS5 (Q9LSS5) Myosin heavy chain-like, ... 39 0.010
TC221619 similar to GB|AAP37732.1|30725420|BT008373 At1g14690 {A... 35 0.14
TC214018 weakly similar to UP|Q9FXI1 (Q9FXI1) F6F9.12 protein, p... 34 0.18
TC206569 weakly similar to UP|Q9LT25 (Q9LT25) Similarity to tran... 33 0.32
CA853080 weakly similar to GP|9759160|dbj| contains similarity t... 33 0.32
TC228985 weakly similar to UP|Q9LUC0 (Q9LUC0) Gb|AAD10662.1, par... 33 0.54
TC219070 weakly similar to UP|Q70KS2 (Q70KS2) BSD protein (Fragm... 32 0.70
TC211489 similar to UP|Q9M1T3 (Q9M1T3) Structural maintenance of... 32 0.70
TC231832 weakly similar to UP|Q8TVZ4 (Q8TVZ4) Uncharacterized pr... 32 0.92
>TC213439
Length = 719
Score = 201 bits (511), Expect = 9e-52
Identities = 113/155 (72%), Positives = 128/155 (81%), Gaps = 7/155 (4%)
Frame = +2
Query: 366 SNSNKKSQSVDAEEGLTTNIRLVEGTRISEEPEHFEISESGGFERKNNLSELHSTSKNHI 425
S+S+KKSQS+DA++G TT+ R VEG +SE+ EHFEI E+ ERKN +ELHS+SKNHI
Sbjct: 29 SDSHKKSQSIDADQGKTTDTRPVEGI-VSEKSEHFEIYENDDSERKNIPTELHSSSKNHI 205
Query: 426 IDNLIRGQLLASESGKNNKHAEHNNYGEASCSNAGWRNQASPVRQWMA-----SLDISEA 480
IDNL+RGQLLASE G N HAE NNYGEASCSNAGWRNQASPV+QWMA LDISEA
Sbjct: 206 IDNLLRGQLLASEGG--NMHAE-NNYGEASCSNAGWRNQASPVKQWMAKLASQDLDISEA 376
Query: 481 SKVHSGSKD--NTLKAKLLEARSKGQRSRLRTLKG 513
SKV SGSK+ NTLKAKLLEARSKGQRSRL+ LKG
Sbjct: 377 SKVPSGSKESNNTLKAKLLEARSKGQRSRLKALKG 481
>TC230774 similar to UP|Q945L6 (Q945L6) AT3g11590/F24K9_26, partial (43%)
Length = 1176
Score = 186 bits (472), Expect = 3e-47
Identities = 110/316 (34%), Positives = 193/316 (60%), Gaps = 11/316 (3%)
Frame = +3
Query: 26 MEMTPYNPAATPNSS-LDFKGRIGEPHYSLKTSTELLKVLNRIWSLEEQHSSNISLIKAL 84
ME+ + A TP SS + K R+ + +L TS ELL+++NR+W E++ SS++SLI AL
Sbjct: 3 MEIETRSRAQTPASSAVAVKARLKDVSNALMTSKELLRIINRMWGHEDRPSSSMSLISAL 182
Query: 85 KTELDRTRIKVKELLRDRQADRHEVDDLMKQIAEDKLVRKSKEQDRLHAAVQSVRDELED 144
TEL+R R++V +L++++++D++E++ LMK AE+K K KEQ+ + AA++S+ EL+
Sbjct: 183 HTELERARLQVNQLIQEQRSDQNEINYLMKCFAEEKAAWKKKEQEIVEAAIESIAGELDV 362
Query: 145 ERKLRKRSESIHRKLARELSEMKSSFTSALKDLEQERTRRKLLEDLCDEFARGINEYEQE 204
ERKLR+R ES+++KL REL++ K+S +K+LE E+ R+++E +CDE AR +E + +
Sbjct: 363 ERKLRRRLESLNKKLGRELADTKTSLLKVVKELESEKRAREIIEQVCDELARDADEDKSD 542
Query: 205 VHTLKQKSEKDWVQRADHDRLVLHISESWLDERMQMQLEAAQNGFMDKNSIVDKLSLEIE 264
+ K+ S K + + ++ ++ +++ +ER Q +L A+ +KN+ VDKL ++E
Sbjct: 543 IEKQKRVSTK-VCEEVEKEKEIMQLTDRLREERAQKKLSEAKYQLEEKNAAVDKLRNQLE 719
Query: 265 TFIKAKQ-NSRSAENQVIRDR-------RNSLESVPLNDAVSAPQAM--GDDDDDDSVGS 314
F+ KQ +S + + D R+ L S + D + G + +++S S
Sbjct: 720 AFLGGKQVREKSRSSTHLSDEEIAAYLSRSRLGSHLVEDKEDDRGEVDNGVECEEESAES 899
Query: 315 DSHCFELNKPSHMGAK 330
D H ELN ++ K
Sbjct: 900 DLHSIELNMDNNKSYK 947
>BI316130
Length = 338
Score = 135 bits (339), Expect = 8e-32
Identities = 65/97 (67%), Positives = 84/97 (86%)
Frame = +3
Query: 117 AEDKLVRKSKEQDRLHAAVQSVRDELEDERKLRKRSESIHRKLARELSEMKSSFTSALKD 176
A KL+RK+KE R+ AAVQS+R+ELEDER+LR+ SES+HRKLARELSE+KSSF+ L++
Sbjct: 9 ARGKLIRKNKEHGRIKAAVQSIREELEDERRLRQHSESLHRKLARELSEVKSSFSGCLRN 188
Query: 177 LEQERTRRKLLEDLCDEFARGINEYEQEVHTLKQKSE 213
LE+ER R LLE+LCDEFA+GI +YEQEVH+L++ SE
Sbjct: 189 LERERKARILLENLCDEFAKGIRDYEQEVHSLRRSSE 299
>BU927326
Length = 445
Score = 91.3 bits (225), Expect = 1e-18
Identities = 47/147 (31%), Positives = 92/147 (61%)
Frame = +2
Query: 113 MKQIAEDKLVRKSKEQDRLHAAVQSVRDELEDERKLRKRSESIHRKLARELSEMKSSFTS 172
+K+++E++ +SKE +++ A V ++ E+ ERK +R ++ +L EL+++K
Sbjct: 5 LKKVSEERASWRSKEHEKIRAYVDDIKSEMSRERKSLQRIGIVNSRLVNELADVKLLAKR 184
Query: 173 ALKDLEQERTRRKLLEDLCDEFARGINEYEQEVHTLKQKSEKDWVQRADHDRLVLHISES 232
++D E+ER R+L+E++CDE A+ I E + E+ LK++S K + + +R +L ++E
Sbjct: 185 YMQDYEKERKARELIEEICDELAKEIGEDKAEIEALKRESMK-LREEVEEERRMLQMAEV 361
Query: 233 WLDERMQMQLEAAQNGFMDKNSIVDKL 259
W +ER+ M+L A+ +K S ++KL
Sbjct: 362 WREERVHMKLIDAKVALDEKYSQMNKL 442
>TC203786
Length = 799
Score = 86.3 bits (212), Expect = 4e-17
Identities = 44/54 (81%), Positives = 48/54 (88%)
Frame = +3
Query: 592 DQSTQKGYSSLLSFTVTDINSTVTKLMALGAELDGPIKYEVHGKVLSSNHAMQC 645
+Q+TQKGYSSLLSFTV D+NSTVTKLMALGAELDGPIKYEVHGKV AM+C
Sbjct: 243 EQATQKGYSSLLSFTVPDMNSTVTKLMALGAELDGPIKYEVHGKVA----AMRC 392
Score = 40.8 bits (94), Expect = 0.002
Identities = 27/52 (51%), Positives = 30/52 (56%), Gaps = 1/52 (1%)
Frame = +2
Query: 553 VQVVITTTQRCSKSCTFLFRRLRLHSQRLHSPLG*TSI-CDQSTQKGYSSLL 603
VQV ITTTQ CSKS T L RRL L Q L LG T I Q+ +S +L
Sbjct: 8 VQVDITTTQGCSKSRTLLLRRLGLQHQCLQPSLGRTPIRFSQACPHAFSQVL 163
>TC220965
Length = 721
Score = 72.4 bits (176), Expect = 6e-13
Identities = 35/41 (85%), Positives = 38/41 (92%)
Frame = -3
Query: 596 QKGYSSLLSFTVTDINSTVTKLMALGAELDGPIKYEVHGKV 636
QK YSSLLSFTVTDINSTVTKL ALGA+L+ PIKYE+HGKV
Sbjct: 677 QKEYSSLLSFTVTDINSTVTKLKALGAQLNSPIKYEIHGKV 555
>TC213530 similar to UP|Q7TP80 (Q7TP80) Aa2-166, partial (7%)
Length = 550
Score = 50.4 bits (119), Expect = 2e-06
Identities = 34/87 (39%), Positives = 50/87 (57%), Gaps = 5/87 (5%)
Frame = +3
Query: 428 NLIRGQLLASESGKNNKHAEHNNYGEASCSNAGWRNQASPVRQWMASLDISEASKVHSGS 487
+++R L+SE G +NK + + E S ++ SPV+QW ++L I + K S S
Sbjct: 72 HVVRNSSLSSE-GNDNKVYPESIFREDSFVHSAVTGNGSPVKQWKSTLIIPDFDKSESCS 248
Query: 488 K-----DNTLKAKLLEARSKGQRSRLR 509
K +NTL AKLLEAR + Q+SR R
Sbjct: 249 KLPTKDNNTLMAKLLEARLERQKSRSR 329
>TC231795 similar to UP|Q6K230 (Q6K230) Intracellular protein transport
protein USO1-like, partial (4%)
Length = 724
Score = 49.7 bits (117), Expect = 4e-06
Identities = 30/83 (36%), Positives = 44/83 (52%), Gaps = 6/83 (7%)
Frame = +1
Query: 436 ASESGKNNKHAEHNNYGEASCSNAGWRNQASPVRQWMASLDISE------ASKVHSGSKD 489
+S S +K + + E SC + SP R W + L +S+ ++K+ G K+
Sbjct: 157 SSLSSVGDKVYPESIFKEDSCVQSAVTANGSPARLWKSKLSVSDFNKSEFSTKLPKGVKE 336
Query: 490 NTLKAKLLEARSKGQRSRLRTLK 512
NTL AKLLEAR + Q+SR R K
Sbjct: 337 NTLMAKLLEARLEAQKSRSRAYK 405
>CO983198
Length = 736
Score = 45.4 bits (106), Expect = 8e-05
Identities = 23/29 (79%), Positives = 24/29 (82%)
Frame = -2
Query: 617 LMALGAELDGPIKYEVHGKVLSSNHAMQC 645
LMALGAELDGPIKYEVHGKV AM+C
Sbjct: 735 LMALGAELDGPIKYEVHGKVA----AMRC 661
>BM528393
Length = 425
Score = 42.7 bits (99), Expect = 5e-04
Identities = 26/64 (40%), Positives = 36/64 (55%), Gaps = 8/64 (12%)
Frame = +2
Query: 256 VDKLSLEIETFIKAKQN--------SRSAENQVIRDRRNSLESVPLNDAVSAPQAMGDDD 307
VDKL +IETF+ AK++ S E + I + SL+S PL +A SAPQ M +D
Sbjct: 2 VDKLGFDIETFLHAKRSVDLKKYGYSSPKELKEIHPCQQSLDSFPLKEAGSAPQNMAQED 181
Query: 308 DDDS 311
D+
Sbjct: 182 SIDT 193
>TC230862
Length = 868
Score = 38.9 bits (89), Expect = 0.008
Identities = 35/145 (24%), Positives = 71/145 (48%), Gaps = 17/145 (11%)
Frame = +1
Query: 53 SLKTSTELLKVLNRIWSLEEQHSSNISLIKALKTELDRTRIKVKELLRD----RQADRH- 107
S+KT ++++ +L +Q + I+ KT + + ++K +L D Q ++H
Sbjct: 127 SVKTKQAHNTLMSQKQALAKQLQQINTSIENSKTRITHSEEQMKAILSDAIKCNQEEKHL 306
Query: 108 ---------EVDDLMKQIA--EDKLVRKSKEQDRLHAAVQSVRDELEDERKLRKRSESIH 156
E+ D K++ + + KE D++ +++ ELE ER LRK+ E
Sbjct: 307 AVTLEFAKWELADAEKELKLLKSAVSSSEKEYDQIQKDTEAIEMELESERSLRKKLEEEL 486
Query: 157 RKLARELSEMKS-SFTSALKDLEQE 180
R+L ++ E+ S + + ++ LE+E
Sbjct: 487 RELNCKIDELTSETGETTIQKLEKE 561
>TC228989 similar to UP|Q9LSS5 (Q9LSS5) Myosin heavy chain-like, partial
(23%)
Length = 884
Score = 38.5 bits (88), Expect = 0.010
Identities = 54/242 (22%), Positives = 111/242 (45%), Gaps = 13/242 (5%)
Frame = +1
Query: 80 LIKALKTELDRTRIKVKELLRDRQADRHEVD-DLMKQIAEDKLVRKSKEQDRLHAAVQSV 138
L++ +K+E + +++ L+ ++AD E+ +LM + E +L +E D L+ ++
Sbjct: 163 LVEQIKSESGKRECELEAELKKKKADIEELKANLMDK--ETELQGIVEENDNLNLKLEES 336
Query: 139 RDELEDERKLRKRSESIHRKLARELSEMKSSFTSALKDLEQERTRRKLLEDLCDEFARGI 198
++E KL++ ++LA ++E+K+ L+ ++L+ + +
Sbjct: 337 MSS-KNEHKLKREI----KRLAECVAELKADMMDKETTLQSISEENEMLKSEINNSGKAR 501
Query: 199 NEYEQEVHTLKQKSEKDWVQRADHDRLV-LHISESWLDE------RMQMQLEAAQNGFMD 251
E EV K A+H+ L+ L I D+ R+ QLEAAQ ++
Sbjct: 502 EEVAAEVEGAKA---------AEHEALMKLGIVMEEADKSNKKAARVAEQLEAAQAANLE 654
Query: 252 KNSIVDKLSLEIETFIKAKQN-----SRSAENQVIRDRRNSLESVPLNDAVSAPQAMGDD 306
+ + +L ++ + + KA + S N + +R SL++ N+ + +P A D
Sbjct: 655 MEAELRRLKVQSDQWRKAAEAAAAMISTGNNNGRLTERTVSLDN---NNYMCSPYAEDMD 825
Query: 307 DD 308
DD
Sbjct: 826 DD 831
>TC221619 similar to GB|AAP37732.1|30725420|BT008373 At1g14690 {Arabidopsis
thaliana;} , partial (33%)
Length = 1044
Score = 34.7 bits (78), Expect = 0.14
Identities = 46/198 (23%), Positives = 78/198 (39%), Gaps = 25/198 (12%)
Frame = +2
Query: 47 IGEPHYSLKTS---TELLKVLNRIWSLEEQHSSNISLIKALKTELDRTRIKVKELLRDRQ 103
IG S++TS T LL+ L +IW+ +TE+++ R+ ++ +
Sbjct: 104 IGAHGTSIRTSSTCTALLRELEQIWN------------DIGETEVEKDRMLMELERECLE 247
Query: 104 ADRHEVDDLMKQIAEDKLVRKSKEQDRLHAAVQSVRDELEDERKLRKRSESIHRKLAR-- 161
R +VD+ A +KE + ++ K KRS S+ +KLA
Sbjct: 248 VYRRKVDEAANTKARFHQTVAAKEAELATLMAALGEHDIHSPIKTEKRSASLKQKLASIT 427
Query: 162 -ELSEMKSSFTSALKDLEQERTR-------------------RKLLEDLCDEFARGINEY 201
+ E+K LK E + + +ED D R +NEY
Sbjct: 428 PWVEELKKKKDERLKQFEDVKAQIEKISGEIFGFHSVNNALSSTTVEDDQDLSLRRLNEY 607
Query: 202 EQEVHTLKQKSEKDWVQR 219
+ + TL QK + D +Q+
Sbjct: 608 QTHLRTL-QKEKSDRLQK 658
>TC214018 weakly similar to UP|Q9FXI1 (Q9FXI1) F6F9.12 protein, partial (13%)
Length = 460
Score = 34.3 bits (77), Expect = 0.18
Identities = 24/115 (20%), Positives = 57/115 (48%), Gaps = 6/115 (5%)
Frame = +1
Query: 75 SSNISLIKALKTELDRTRIKVKELLRDRQADRHEVDDLMKQIAEDKLVRKSK------EQ 128
+ N+ + K+ E ++ +VK L Q + +K + E +++ E
Sbjct: 91 AENLEMTKSRLLETEQHLAEVKSQLTSAQRSNSLAETQLKCMTESYRTIEARTKEFETEL 270
Query: 129 DRLHAAVQSVRDELEDERKLRKRSESIHRKLARELSEMKSSFTSALKDLEQERTR 183
+ L +++ +ELEDE+K + + + ++++ +L +SS +A KD++ ++ R
Sbjct: 271 NHLQMKTETLENELEDEKKAHEEALAKYKEIEEQLQRNESS--AADKDIKTKQER 429
>TC206569 weakly similar to UP|Q9LT25 (Q9LT25) Similarity to transcription
factor CA150b, partial (19%)
Length = 760
Score = 33.5 bits (75), Expect = 0.32
Identities = 38/159 (23%), Positives = 69/159 (42%), Gaps = 3/159 (1%)
Frame = +3
Query: 94 KVKELLRDR---QADRHEVDDLMKQIAEDKLVRKSKEQDRLHAAVQSVRDELEDERKLRK 150
+VKE LRD + RHE +++ ++ + + K + HAA + + ++E++ KLR+
Sbjct: 54 RVKENLRDDPRYKCVRHED----REVLFNEYISELKAAE--HAAERETKAKMEEQDKLRE 215
Query: 151 RSESIHRKLARELSEMKSSFTSALKDLEQERTRRKLLEDLCDEFARGINEYEQEVHTLKQ 210
R + ++ RE EM+ + + L+E + D K
Sbjct: 216 RERELRKRKEREEQEMERVRLKIRRKDAVTLFQALLVETIKDPLVSWTES--------KP 371
Query: 211 KSEKDWVQRADHDRLVLHISESWLDERMQMQLEAAQNGF 249
K EKD +RA + L +E E ++M E + F
Sbjct: 372 KLEKDAQRRATNPDLDPLDTEKLFREHVKMLQERCAHEF 488
>CA853080 weakly similar to GP|9759160|dbj| contains similarity to myosin
heavy chain~gene_id:MEE6.21 {Arabidopsis thaliana},
partial (10%)
Length = 583
Score = 33.5 bits (75), Expect = 0.32
Identities = 46/213 (21%), Positives = 91/213 (42%), Gaps = 5/213 (2%)
Frame = +1
Query: 91 TRIKVKELLRDRQADRHEVDDLMKQIAEDKLVRKSKEQDRLHAAVQSVRDELEDERKLRK 150
+ I+ E ++QA E D ++ + DK+ ++ + A+Q+ + K K
Sbjct: 22 SHIRGLEKEMEKQAQGFEAD--LEAVMHDKVEQEQR-------AIQAEEALRKTRLKNAK 174
Query: 151 RSESIHRKLARELSEMKSSFTSALKDLEQERTRRKLLEDLCDEFARGINEYEQEVHTLKQ 210
+E + + R ++M ++F D ++ T + L E E E++VH +K+
Sbjct: 175 TAERLQEEFRRLSTQMTTTF-----DANEKATMKALTE--ASEVRAQKMLLEEKVHKVKE 333
Query: 211 KSEKDWVQRADHDRLVLHISESWLDERMQMQLEAAQNGFMDKNSIVDKLSLEIETFIKAK 270
+ E +A ++ + +S ++Q+Q ++ LEIE K
Sbjct: 334 EVEST---KAGYEVKLNQLSNQIDTMKVQIQ----------------QMLLEIEDKSKQL 456
Query: 271 QNSRSAENQVIRDRRNSL-----ESVPLNDAVS 298
QN + + QVIRD + E+ LN+ +S
Sbjct: 457 QNQKKHQEQVIRDFSEEIALLKAENGKLNEEIS 555
>TC228985 weakly similar to UP|Q9LUC0 (Q9LUC0) Gb|AAD10662.1, partial (50%)
Length = 941
Score = 32.7 bits (73), Expect = 0.54
Identities = 33/144 (22%), Positives = 66/144 (44%), Gaps = 14/144 (9%)
Frame = +2
Query: 46 RIGEPHYSLKTSTELLKVLNRIWSLEEQHSSNISLIKALKTELDRTRIKVKELLRDRQAD 105
R+ SL+ TE + ++ Q + + +A +TEL + R VKEL RQ
Sbjct: 65 RVAHFRESLRADTEAR--MRELYDKAAQLEAELRGAEAARTELLQVRSDVKELTAVRQDL 238
Query: 106 RHEVDDLMKQIAEDKLVRKSKEQDRLHAAVQSVRDELEDER-----------KLRKRSES 154
+V + + +A ++ +K L A V++++ EL+ R + + +
Sbjct: 239 SGQVQAMTQDLA--RMTADAKRVPALRADVEAMKQELQCARAAIEYEKKGFAENYEHGQV 412
Query: 155 IHRKL---ARELSEMKSSFTSALK 175
+ +KL ARE+ ++++ +A K
Sbjct: 413 MEKKLVAMAREMEKLRAEIANAEK 484
>TC219070 weakly similar to UP|Q70KS2 (Q70KS2) BSD protein (Fragment),
partial (12%)
Length = 930
Score = 32.3 bits (72), Expect = 0.70
Identities = 14/54 (25%), Positives = 34/54 (62%), Gaps = 5/54 (9%)
Frame = +3
Query: 263 IETFIKAKQNSR-----SAENQVIRDRRNSLESVPLNDAVSAPQAMGDDDDDDS 311
++T+ + +++S S +NQ++ + N++E + ++D +S+ + +GD D D S
Sbjct: 279 VDTYQEGREDSERESISSEQNQILTEVTNAVEGLEVDDTISSEKWLGDTDIDAS 440
>TC211489 similar to UP|Q9M1T3 (Q9M1T3) Structural maintenance of chromosomes
(SMC)-like protein, partial (15%)
Length = 633
Score = 32.3 bits (72), Expect = 0.70
Identities = 27/120 (22%), Positives = 54/120 (44%), Gaps = 11/120 (9%)
Frame = +3
Query: 111 DLMKQIAEDKLVRKSKEQDRLHAAVQSVRDELE-----------DERKLRKRSESIHRKL 159
++ K+ EDKL S+E+ + ++ + +L+ D RKL KR I ++
Sbjct: 285 EIEKRSIEDKLSNLSQEKKTIKERIECISPDLQKLNDAVNKSNADVRKLEKRINEITDRI 464
Query: 160 ARELSEMKSSFTSALKDLEQERTRRKLLEDLCDEFARGINEYEQEVHTLKQKSEKDWVQR 219
R+ S KS + ++ E E R K + + +E ++ + + L+ + +D R
Sbjct: 465 YRDFS--KSVGVANIR--EYEENRLKAAQSIAEERLNLSSQLSKLKYQLEYEQNRDMTSR 632
>TC231832 weakly similar to UP|Q8TVZ4 (Q8TVZ4) Uncharacterized protein
conserved in archaea, partial (14%)
Length = 679
Score = 32.0 bits (71), Expect = 0.92
Identities = 31/97 (31%), Positives = 48/97 (48%), Gaps = 11/97 (11%)
Frame = +1
Query: 84 LKTELDRTRIKVKELLRDRQADRHEVDDLMKQIAEDKLVRKSKEQDRL-------HAAVQ 136
L+TEL++ +++ R+ +A + EVD L +AE K V SKEQD L AAV
Sbjct: 340 LETELNKKLEELEAKEREYEAKQVEVDTL---LAERKTVIASKEQDLLDRLQELKDAAVA 510
Query: 137 SVRDELEDERKLRKRS----ESIHRKLARELSEMKSS 169
S+ + + R S E+ K++ L + SS
Sbjct: 511 SIVEAHANHRNATLESVYDGENKDNKVSNSLGDTNSS 621
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.317 0.131 0.368
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,313,802
Number of Sequences: 63676
Number of extensions: 335819
Number of successful extensions: 2201
Number of sequences better than 10.0: 59
Number of HSP's better than 10.0 without gapping: 2160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2185
length of query: 676
length of database: 12,639,632
effective HSP length: 104
effective length of query: 572
effective length of database: 6,017,328
effective search space: 3441911616
effective search space used: 3441911616
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)
Medicago: description of AC140913.13