BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC140913.1 - phase: 0 /pseudo
(695 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC233691 similar to UP|O04238 (O04238) Transcription factor, par... 123 3e-28
TC230967 similar to UP|Q9ZUM1 (Q9ZUM1) Expressed protein (At2g02... 34 0.19
TC214082 similar to UP|Q75QC2 (Q75QC2) Glutamate-rich protein, p... 31 2.1
TC207509 30 2.8
AI938695 30 2.8
TC215037 similar to UP|Q8RWP9 (Q8RWP9) Deetiolated 1-like protei... 30 4.7
TC213618 similar to UP|Q9FZ06 (Q9FZ06) Kinesin-like protein, par... 30 4.7
CA801268 29 8.0
>TC233691 similar to UP|O04238 (O04238) Transcription factor, partial (5%)
Length = 558
Score = 123 bits (308), Expect = 3e-28
Identities = 87/163 (53%), Positives = 114/163 (69%), Gaps = 8/163 (4%)
Frame = +2
Query: 457 SLFRLLLLLAFK*RRTFGLVFILPTVGLVPLQLLL-RFLNWLMLFLLYLIKKQRVMT--- 512
+L L+ +L K R TFGL FIL V L+P QL+ +L +LFLL+L++ +V+T
Sbjct: 65 TLLVLIKMLPLK-RMTFGLEFILAVVVLIPQQLVTPSYLFCPILFLLHLVRNLQVVTITL 241
Query: 513 -MFLPCITSF*DRVI*R*-*II*IQ-TSMGGHPRQRDLFIGLLQLFRPSQSNLRH*DHSK 569
+ LPCI +F D+ R *II*IQ TSM GHP+++++FIGL LF+PSQ NLRH DH K
Sbjct: 242 LLILPCIINFQDQATCRCR*II*IQLTSMVGHPQRQNIFIGLR*LFKPSQFNLRHWDHRK 421
Query: 570 IQQLI-WIP**PAIRLLLLMFLCPTLPLQILTMPF*VMQKDSN 611
IQ LI +P AI LLLL+FLCPTLPL IL MP+*V++K S+
Sbjct: 422 IQ*LI*IVPCYLAIPLLLLIFLCPTLPL*IL*MPY*VIRKVSD 550
>TC230967 similar to UP|Q9ZUM1 (Q9ZUM1) Expressed protein (At2g02170/F5O4.6),
partial (32%)
Length = 790
Score = 34.3 bits (77), Expect = 0.19
Identities = 25/66 (37%), Positives = 38/66 (56%), Gaps = 5/66 (7%)
Frame = -1
Query: 442 IMIWT*CALMKLQIESLFRLLLLLAFK*RRTFGLVFILPTVG-----LVPLQLLLRFLNW 496
I ++T AL LQ++ + LLLLLAF R + L ++ ++ LV QLL +F +
Sbjct: 601 IFVYTLLALQLLQLDDFYWLLLLLAFP--RLYALQLLICSLAYHAPYLVFFQLLPQFFSS 428
Query: 497 LMLFLL 502
+LFLL
Sbjct: 427 WLLFLL 410
>TC214082 similar to UP|Q75QC2 (Q75QC2) Glutamate-rich protein, partial (34%)
Length = 1032
Score = 30.8 bits (68), Expect = 2.1
Identities = 26/67 (38%), Positives = 34/67 (49%), Gaps = 5/67 (7%)
Frame = -3
Query: 457 SLFRLLLLLAFK*RRTFGLVFILPTVGLVP-----LQLLLRFLNWLMLFLLYLIKKQRVM 511
+L LL LL F + L+ LP L P LQLL L WL+L LL+L+ V+
Sbjct: 508 ALLLLLSLLQFSPLISLLLLASLPLSPLSPPPRSQLQLL*APLAWLLL*LLFLLFLLLVL 329
Query: 512 TMFLPCI 518
FLP +
Sbjct: 328 RWFLPLV 308
>TC207509
Length = 641
Score = 30.4 bits (67), Expect = 2.8
Identities = 18/43 (41%), Positives = 22/43 (50%)
Frame = -1
Query: 58 FNLCLSLSRGIDYALANGEVPLKANELPILMKQMYQRKTDDHS 100
FN + L GI LANG V +K L +L+ QRK HS
Sbjct: 638 FNSFIKLCLGIGLNLANGFVQIKRRRLLVLLGLNQQRKRHLHS 510
>AI938695
Length = 421
Score = 30.4 bits (67), Expect = 2.8
Identities = 19/61 (31%), Positives = 33/61 (53%), Gaps = 1/61 (1%)
Frame = +1
Query: 445 WT*CALMKLQIESLFRLLLLLAFK*RRTFGLVFIL-PTVGLVPLQLLLRFLNWLMLFLLY 503
WT C + + + F++ L FK +F LVF+ T G L+LL +++ + L++ Y
Sbjct: 133 WTNCRI*DFCLLNFFKIFFLFFFKKGFSFILVFVC*TTGGF*TLKLLNKYIVYKHLYISY 312
Query: 504 L 504
L
Sbjct: 313 L 315
>TC215037 similar to UP|Q8RWP9 (Q8RWP9) Deetiolated 1-like protein, partial
(44%)
Length = 785
Score = 29.6 bits (65), Expect = 4.7
Identities = 14/37 (37%), Positives = 24/37 (64%)
Frame = +1
Query: 484 LVPLQLLLRFLNWLMLFLLYLIKKQRVMTMFLPCITS 520
L+ QLLL ++ W+ L L + I+ Q+ T F+ C++S
Sbjct: 130 LITTQLLLLYITWIQLKLYHFIRIQQ--TSFICCLSS 234
>TC213618 similar to UP|Q9FZ06 (Q9FZ06) Kinesin-like protein, partial (9%)
Length = 626
Score = 29.6 bits (65), Expect = 4.7
Identities = 22/71 (30%), Positives = 36/71 (49%), Gaps = 8/71 (11%)
Frame = -1
Query: 255 NLGQIFFKLWVSSMGIILY---LLPI*VLDPCLRIQFFHQIMFSL--LYLLMQIQILSRE 309
N+GQ++ KLW S ++ P+ PC + FF +F L LY+ + ++ R
Sbjct: 590 NIGQLYVKLW*SKFDQPIFNNIFSPL----PCPKTSFFSPSIFPLYQLYIHSFLSVMDRY 423
Query: 310 NQ---KSLLIV 317
N+ K LL+V
Sbjct: 422 NKYHPKPLLLV 390
>CA801268
Length = 409
Score = 28.9 bits (63), Expect = 8.0
Identities = 18/39 (46%), Positives = 21/39 (53%)
Frame = +1
Query: 639 LYWVRVLGMHSLFNLHLKWQLSIFYIIFP*KENITTAHI 677
LYWV +L L H QL +F FP*KEN+ A I
Sbjct: 181 LYWVSLLIEDELSF*HHY*QLKLF*DNFP*KENVKAADI 297
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.357 0.160 0.557
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,277,186
Number of Sequences: 63676
Number of extensions: 522528
Number of successful extensions: 6341
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 3535
Number of HSP's successfully gapped in prelim test: 287
Number of HSP's that attempted gapping in prelim test: 2702
Number of HSP's gapped (non-prelim): 3992
length of query: 695
length of database: 12,639,632
effective HSP length: 104
effective length of query: 591
effective length of database: 6,017,328
effective search space: 3556240848
effective search space used: 3556240848
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 14 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (21.7 bits)
S2: 62 (28.5 bits)
Medicago: description of AC140913.1