TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC140850.4 - phase: 0 /pseudo
         (1010 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

NP395547 reverse transcriptase [Glycine max]                          102  8e-22
NP395548 reverse transcriptase [Glycine max]                           94  4e-19
BI321666                                                               60  5e-09
BE802896                                                               56  9e-08
TC234722 similar to UP|Q6WAY9 (Q6WAY9) Pol (Fragment), partial (...    37  0.033
TC228833 similar to UP|Q9ZPI4 (Q9ZPI4) Molybdopterin synthase su...    33  0.82
BM525895                                                               30  4.1

>NP395547 reverse transcriptase [Glycine max]
          Length = 762

 Score =  102 bits (254), Expect = 8e-22
 Identities = 90/251 (35%), Positives = 118/251 (46%)
 Frame = +2

Query: 255 RRWLS*LKSA*SIQSRIVHG*ARCK*CRRRVV*R*SKLRRMSSSLQEPSSGGGCVLITED 314
           +R+ S  +   S Q +I  G  R K  +++  *+  K+  MS  LQE S  G CVLI   
Sbjct: 8   KRYSSY*RQGSSTQFQIAPGLVRFKLFQKKEG*QW*KMIEMS*FLQEESPDGECVLIIGS 187

Query: 315 LTKLQGKIISHCLSWTKCLNAFPVKLIIVSLMATRAITKSQSIRRTMRRQLLHVL*ESLH 374
             K Q K I+H  SW KCL         VS   T+   + Q I R  ++QLLHVL   L 
Sbjct: 188 SMKPQEKTITHFPSWIKCLRDLQGNPSTVSWTDTQVTIRLQWILRIKKKQLLHVLSVFLL 367

Query: 375 IEECCLVYPMRLQHSNDVCKRYSPT*LRRVLRYSWMIFLFLDHPMMFA*TTWTPC*SGVK 434
           I  C  VY M L    DV  ++  T  R VL+  WMIF  L H +  A*     C + VK
Sbjct: 368 IAACRSVYVMPLLLFRDV*WQFLMTW*RNVLKSLWMIFRSLVHLLEIA*QI*RKCYNVVK 547

Query: 435 KPILCLIGKNVI*W*PRALFLVTRFHQEALKLTRERLM*SESSHHG*MSMGSVAFLVMPS 494
             I CL GKNV  W  + L   T+  +E L+  ++  M   + H   M      F VM  
Sbjct: 548 NLIWCLTGKNVTLWYKKVLC*DTKSLKEELRWLKKN*MLLINFHPQLM*KAYTVFWVMLD 727

Query: 495 FTGDLSKTSQR 505
           F GD  +TS +
Sbjct: 728 FIGDS*RTSPK 760


>NP395548 reverse transcriptase [Glycine max]
          Length = 762

 Score = 93.6 bits (231), Expect = 4e-19
 Identities = 87/252 (34%), Positives = 114/252 (44%)
 Frame = +2

Query: 254 ARRWLS*LKSA*SIQSRIVHG*ARCK*CRRRVV*R*SKLRRMSSSLQEPSSGGGCVLITE 313
           ARR+ S  +   S  S    G*A+   CRR+  *+  +++RM+    E S  G    IT 
Sbjct: 5   ARRF*SF*RLGLSTPSPTALG*AQSWWCRRKRA*QSFEMKRMT*YQHELSLVGNYASITA 184

Query: 314 DLTKLQGKIISHCLSWTKCLNAFPVKLIIVSLMATRAITKSQSIRRTMRRQLLHVL*ESL 373
             TK QGK IS   SW +C       LII S M T  I +     R  RR   H L  SL
Sbjct: 185 SSTKPQGKTISLYPSWIRCWRDLQDTLIIASWMHTLDIIRLL*TPRIRRRWPSHALLVSL 364

Query: 374 HIEECCLVYPMRLQHSNDVCKRYSPT*LRRVLRYSWMIFLFLDHPMMFA*TTWTPC*SGV 433
            I+   L   M L HS   C  +   * R+  +YSWM F +L       * +W       
Sbjct: 365 PIDGFHLGCAMHLPHSKCACWPFLQI*WRKASKYSWMTFQYLCPH*KVV*RSWRWYYKDA 544

Query: 434 KKPILCLIGKNVI*W*PRALFLVTRFHQEALKLTRERLM*SESSHHG*MSMGSVAFLVMP 493
            K     IG++V  W  +A     +F  E L+ T++RLM  +S HH  M   S A    P
Sbjct: 545 WKQT*Y*IGRSVTSWFEKA*S*AIKFRPEELR*TKQRLMSLKSCHHHQMLKASGAS*DKP 724

Query: 494 SFTGDLSKTSQR 505
             T D S+TSQ+
Sbjct: 725 GSTEDSSRTSQK 760


>BI321666 
          Length = 430

 Score = 60.1 bits (144), Expect = 5e-09
 Identities = 37/83 (44%), Positives = 45/83 (53%)
 Frame = +3

Query: 748 LQKYSNPVSIGQNFSKMLTLIASFVMNVKEPDQCQSGMKCLYKVFLKWKCLIVGVLILLA 807
           LQ Y N   I   FSKM   + S V+N KE +    GM C    F +W+ L +G LILL 
Sbjct: 6   LQMYFNLDFICHPFSKMHMFMLSHVINAKELEVFPRGMNCHCIPFWRWRSLTIGALILLV 185

Query: 808 PSHHRTQMNTSW*P*IMSQSGWK 830
           P  H + MNT  * *IM  SGW+
Sbjct: 186 PFLHHSPMNTF****IM*ASGWR 254


>BE802896 
          Length = 416

 Score = 55.8 bits (133), Expect = 9e-08
 Identities = 42/99 (42%), Positives = 57/99 (57%), Gaps = 4/99 (4%)
 Frame = +3

Query: 24  AWSV*TTILEPTRYERNFSNAYTIASNSFLVVA*LICASFKTLLA*CIAWKILFLR*PST 83
           AWS+*T +  P++ E NFS A T+A++SF VV *   A+ K L  * I    L + *  T
Sbjct: 3   AWSI*TIMRVPSK*E*NFSRAKTMANSSFSVVV*FAWAASKVLEE*YITLGNLSIF*ART 182

Query: 84  TPTT*SLASHINSEFKFQFGA----VIIGAEVNRSPTHL 118
           TP  *  ASHI+S+   Q GA    V+I A + +S  +L
Sbjct: 183 TPNA*FDASHISSKGAVQSGAWMMGVVISALLRQSKAYL 299



 Score = 37.4 bits (85), Expect = 0.033
 Identities = 44/136 (32%), Positives = 62/136 (45%)
 Frame = -3

Query: 489 FLVMPSFTGDLSKTSQR*QSH*EICSTKISLFSLIMIV*MLLKL*RSG*PPHQ*SQLQIG 548
           FLVM   TG L +  ++*  H   C  +    +L++    LL   +  * P   S+   G
Sbjct: 411 FLVMQDSTGAL*EILEK*PFHYPTCCKRR*SLTLMINANRLLIASKEH*LPPPSSRHPTG 232

Query: 549 T*TLN*CVMLVIMLLVSC*VNARTKFSMLYIMRVKF*MKNKLIMLPLKKSCSQ*YMHWKN 608
              L+ CVM  IM      +         YI+ +  *M  K I+L L+KS   *++  KN
Sbjct: 231 QPLLSLCVMHQIMHWGLSLLRKLINCLG*YIILLGL*MLPKRIILLLRKSY*P*FLLLKN 52

Query: 609 FVHTS*VPKLLFTLTM 624
           F+    V  LLF LTM
Sbjct: 51  FILICLVLALLFILTM 4


>TC234722 similar to UP|Q6WAY9 (Q6WAY9) Pol (Fragment), partial (32%)
          Length = 482

 Score = 37.4 bits (85), Expect = 0.033
 Identities = 25/71 (35%), Positives = 32/71 (44%)
 Frame = -1

Query: 891 ILKPTVKPRSQTEKLKELWRK*SQHLGRIGRRSLMTPCGLIG*HTSLL*VTHHFKWFTTS 950
           I K   K + Q ++  E  R    H  +IG  S M   GL G H+ L *  HHF W    
Sbjct: 230 IPKQMAKQKFQIKR*SEYLRILLCHQEKIGL*SWMMLSGLTGLHSRLP*ACHHFNWSMVK 51

Query: 951 HVIYQ*ISNTK 961
           H  Y+   +TK
Sbjct: 50  HATYRWSWSTK 18


>TC228833 similar to UP|Q9ZPI4 (Q9ZPI4) Molybdopterin synthase sulphurylase
           (Fragment), partial (94%)
          Length = 1414

 Score = 32.7 bits (73), Expect = 0.82
 Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
 Frame = +2

Query: 315 LTKLQGKIISH----CLSWTKCLNAFPVKLIIVSLMATRAITKSQSIRRTMRRQLLHVL* 370
           L +LQ  ++SH    CLSW  CL+ F +  +   L + + + K Q +  +    L  ++ 
Sbjct: 596 LLRLQLLLVSHSQEGCLSWMHCLDGFVLSKLEEGLCSVKLVEKMQHLPNSNSENL--IMR 769

Query: 371 ESLHIEECCLV 381
            SL +   CL+
Sbjct: 770 SSLRLPCVCLL 802


>BM525895 
          Length = 428

 Score = 30.4 bits (67), Expect = 4.1
 Identities = 30/84 (35%), Positives = 43/84 (50%), Gaps = 1/84 (1%)
 Frame = +3

Query: 124 RKRRN*KNA*TSWKP*RRFLQRKQKWRS*KRKKRLKNQIMN*KCCRHILIMCS-LKKTAL 182
           RKR+N*K A    K  R   QR++K R  KR+++L+NQ M     R +    S LK + +
Sbjct: 24  RKRKN*KKAKRRTKKQRN--QRRKKRR--KRREKLRNQKMTKNLRRKLRRQKSCLKCSCI 191

Query: 183 NKSLLATLYQAMKKTS*LKFLSKI 206
            K +LA      K +   K  S+I
Sbjct: 192 VKGVLARFVAPSKDSQGSKIYSQI 263


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.358    0.155    0.550 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,939,457
Number of Sequences: 63676
Number of extensions: 700114
Number of successful extensions: 7037
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 3836
Number of HSP's successfully gapped in prelim test: 278
Number of HSP's that attempted gapping in prelim test: 3093
Number of HSP's gapped (non-prelim): 4322
length of query: 1010
length of database: 12,639,632
effective HSP length: 107
effective length of query: 903
effective length of database: 5,826,300
effective search space: 5261148900
effective search space used: 5261148900
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 14 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (21.8 bits)
S2: 64 (29.3 bits)