BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC140849.7 + phase: 0 /pseudo/partial
(191 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC234715 similar to UP|SYT_ARATH (O04630) Threonyl-tRNA syntheta... 141 2e-34
TC225598 similar to UP|Q84TG4 (Q84TG4) At5g26830/F2P16_90, parti... 105 2e-23
TC208198 32 0.18
TC218219 similar to UP|MT70_ARATH (O82486) Probable N6-adenosine... 30 0.52
TC218098 weakly similar to UP|Q8K1Y5 (Q8K1Y5) Carm1-pending prot... 30 0.68
TC214890 homologue to PIR|C86216|C86216 protein T23G18.6 [import... 27 4.4
TC211335 similar to UP|Q9FI68 (Q9FI68) Arginine methyltransferas... 27 4.4
TC209853 similar to UP|Q9SAC4 (Q9SAC4) T16B5.8, partial (37%) 27 5.8
>TC234715 similar to UP|SYT_ARATH (O04630) Threonyl-tRNA synthetase,
mitochondrial precursor (Threonine--tRNA ligase)
(ThrRS) , partial (25%)
Length = 536
Score = 141 bits (356), Expect = 2e-34
Identities = 69/95 (72%), Positives = 78/95 (81%), Gaps = 3/95 (3%)
Frame = +3
Query: 4 TKHGCKLCIGPCTTTENGFYYDAIYCNLGLKDYQFKIIESGAFKVVVEKQP---IEVTRD 60
T++GCKLCIGPCTT GFYYDA Y +LGL D FK IE+GA K V EKQP IEVTRD
Sbjct: 252 TEYGCKLCIGPCTTRGEGFYYDAFYGDLGLNDDHFKQIEAGALKAVAEKQPFERIEVTRD 431
Query: 61 QALEIFSDDKFKVEIINNLAPDETITVYRCGPLVD 95
QALE+FSD+KFK+EIIN+L D+TITVYRCGPLVD
Sbjct: 432 QALEMFSDNKFKIEIINDLPADKTITVYRCGPLVD 536
>TC225598 similar to UP|Q84TG4 (Q84TG4) At5g26830/F2P16_90, partial (59%)
Length = 1582
Score = 105 bits (261), Expect = 2e-23
Identities = 47/55 (85%), Positives = 49/55 (88%)
Frame = +1
Query: 136 AKKYDHRILGLKQELVSLHEWSPGSWFFLPHGALIYNKLMDFIRNQYRHRGYQEV 190
AKKYDHRILG+KQEL+ HEWSPGSWFFLP G IYNKLMDFIRNQYR RGYQEV
Sbjct: 1 AKKYDHRILGVKQELILHHEWSPGSWFFLPQGTRIYNKLMDFIRNQYRDRGYQEV 165
>TC208198
Length = 1020
Score = 32.0 bits (71), Expect = 0.18
Identities = 17/63 (26%), Positives = 32/63 (49%)
Frame = +3
Query: 19 ENGFYYDAIYCNLGLKDYQFKIIESGAFKVVVEKQPIEVTRDQALEIFSDDKFKVEIINN 78
E G C L LK+ +++ + A+ + ++QP + Q ++I S D +VEI+
Sbjct: 582 EQGGILQTSSCKLDLKEPYYRMSQPQAYPLTQDQQPQPFLQTQDIDIQSQDLDEVEIMQQ 761
Query: 79 LAP 81
+P
Sbjct: 762 PSP 770
>TC218219 similar to UP|MT70_ARATH (O82486) Probable
N6-adenosine-methyltransferase MT-A70-like protein ,
partial (40%)
Length = 1364
Score = 30.4 bits (67), Expect = 0.52
Identities = 21/97 (21%), Positives = 46/97 (46%)
Frame = +3
Query: 15 CTTTENGFYYDAIYCNLGLKDYQFKIIESGAFKVVVEKQPIEVTRDQALEIFSDDKFKVE 74
C+ E G + + N +++++ I+ G F V++ P ++ + +DD+ +
Sbjct: 357 CSEVELG---EPQWINCDIRNFRMDIL--GQFGVIMADPPWDIHMELPYGTMADDEMRSL 521
Query: 75 IINNLAPDETITVYRCGPLVDLYRACLEFPGFFSILE 111
+ L D I ++ G ++L R CL+ G+ + E
Sbjct: 522 NVPALQTDGLIFLWVTGRAMELGRECLDLWGYKRVEE 632
>TC218098 weakly similar to UP|Q8K1Y5 (Q8K1Y5) Carm1-pending protein, partial
(6%)
Length = 1369
Score = 30.0 bits (66), Expect = 0.68
Identities = 16/64 (25%), Positives = 31/64 (48%)
Frame = +3
Query: 19 ENGFYYDAIYCNLGLKDYQFKIIESGAFKVVVEKQPIEVTRDQALEIFSDDKFKVEIINN 78
E G C L LK+ +++ + A+ + ++QP + + Q + I S D + EI+
Sbjct: 786 EQGGILQTSSCKLDLKEPYYRMSQPQAYALAQDQQPQPLIQTQDIHIQSQDLDEPEIVQQ 965
Query: 79 LAPD 82
P+
Sbjct: 966 PLPN 977
>TC214890 homologue to PIR|C86216|C86216 protein T23G18.6 [imported] -
Arabidopsis thaliana {Arabidopsis thaliana;} , partial
(98%)
Length = 1567
Score = 27.3 bits (59), Expect = 4.4
Identities = 11/16 (68%), Positives = 14/16 (86%)
Frame = +1
Query: 163 FLPHGALIYNKLMDFI 178
FLP GALIY+ ++DFI
Sbjct: 1219 FLPIGALIYSSMVDFI 1266
>TC211335 similar to UP|Q9FI68 (Q9FI68) Arginine methyltransferase-like
protein, partial (8%)
Length = 594
Score = 27.3 bits (59), Expect = 4.4
Identities = 14/58 (24%), Positives = 30/58 (51%)
Frame = +2
Query: 19 ENGFYYDAIYCNLGLKDYQFKIIESGAFKVVVEKQPIEVTRDQALEIFSDDKFKVEII 76
E G C L LK+ +++ + A+ + ++QP + + Q + I S + +VE++
Sbjct: 11 ERGGILQTSSCKLDLKEPYYRMSQPQAYPLAQDQQPQPLLQTQDIHIQSQELDEVEMM 184
>TC209853 similar to UP|Q9SAC4 (Q9SAC4) T16B5.8, partial (37%)
Length = 842
Score = 26.9 bits (58), Expect = 5.8
Identities = 10/28 (35%), Positives = 16/28 (56%)
Frame = +2
Query: 143 ILGLKQELVSLHEWSPGSWFFLPHGALI 170
+ GL + L+S H W SW F+ G ++
Sbjct: 77 VKGLGRSLLSCHVWRSVSWIFMGWGTVL 160
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.329 0.146 0.474
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,882,731
Number of Sequences: 63676
Number of extensions: 138566
Number of successful extensions: 708
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 705
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 707
length of query: 191
length of database: 12,639,632
effective HSP length: 92
effective length of query: 99
effective length of database: 6,781,440
effective search space: 671362560
effective search space used: 671362560
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 56 (26.2 bits)
Medicago: description of AC140849.7