TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC140773.5 - phase: 0 /pseudo
         (194 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC234928 homologue to GB|AAM55302.1|28624758|AY115841 auxin infl...    31  0.31
BQ740416                                                               30  0.70
TC220240 similar to UP|TNF6_HUMAN (P48023) Tumor necrosis factor...    28  2.7
TC231789 similar to GB|AAN31090.1|23506157|AY149936 At1g80510/T2...    28  2.7
TC221876 similar to UP|Q9LU01 (Q9LU01) Arabidopsis thaliana geno...    28  2.7
BI969700                                                               28  2.7
TC205307 similar to GB|AAQ73179.1|34485583|AY341888 extracellula...    27  4.5
AW459912 similar to GP|12580867|em 60S ribosomal protein L13E {P...    27  4.5
TC221918 weakly similar to UP|Q6H890 (Q6H890) BRAP2-like protein...    27  4.5
AW185036 similar to GP|27413633|gb xanthine dehydrogenase 1 {Ara...    27  7.7
CA801082 similar to GP|15294212|gb| AT5g17550/K10A8_30 {Arabidop...    27  7.7
TC203574 weakly similar to UP|Q850I3 (Q850I3) Gag-pol polyprotei...    27  7.7
TC206966 similar to UP|Q94EI3 (Q94EI3) AT5g17550/K10A8_30, parti...    27  7.7

>TC234928 homologue to GB|AAM55302.1|28624758|AY115841 auxin influx carrier
           protein {Medicago truncatula;} , partial (28%)
          Length = 459

 Score = 31.2 bits (69), Expect = 0.31
 Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
 Frame = +1

Query: 139 LIFSKGPYDLSFLKSKFRTEPKIEN---NEKYLDWLDKVEKIKGPFWKEMGV 187
           L+ S   Y +S L  ++R+  + EN       + W + +E + GP+WK +G+
Sbjct: 271 LLGSYTAYLISILYIEYRSRKEKENVSFKNHVIQWFEVLEGLLGPYWKAIGL 426


>BQ740416 
          Length = 286

 Score = 30.0 bits (66), Expect = 0.70
 Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
 Frame = -3

Query: 8   SKAIYMTLSHIF---TLTSFLLSLLLLFSPSPSSTLRFQNIVHNSTKNFEI 55
           S AIY+ + HIF   + T+ LLSL+  FS   ++T       H+S KNF +
Sbjct: 260 SLAIYIFVLHIFIGYSHTATLLSLIKAFSSYSNTTPVQSKSDHHSKKNFHL 108


>TC220240 similar to UP|TNF6_HUMAN (P48023) Tumor necrosis factor ligand
           superfamily member 6 (FAS antigen ligand) (Apoptosis
           antigen ligand) (APTL) (CD178 antigen), partial (7%)
          Length = 837

 Score = 28.1 bits (61), Expect = 2.7
 Identities = 22/77 (28%), Positives = 37/77 (47%), Gaps = 5/77 (6%)
 Frame = +3

Query: 11  IYMTLSHIFTLTSFLLSLLLLFSPSPSSTLRFQNIVHNSTKNFEIFMARVEGSSSQPTKQ 70
           I++ L H  +LTS   S ++   PSPSS+++F +I+      F   +      +S   +Q
Sbjct: 390 IFLRLLHRSSLTSS--SDVVFLFPSPSSSIKFTHIILQENTAFSSLLHLHAHLNSTRWRQ 563

Query: 71  H-----EPNVNLPVNTQ 82
           H     +PN  +   TQ
Sbjct: 564 HPKSTFDPNRFISKTTQ 614


>TC231789 similar to GB|AAN31090.1|23506157|AY149936 At1g80510/T21F11_16
           {Arabidopsis thaliana;} , partial (42%)
          Length = 1044

 Score = 28.1 bits (61), Expect = 2.7
 Identities = 13/27 (48%), Positives = 19/27 (70%)
 Frame = -1

Query: 129 VFPWNEAQLPLIFSKGPYDLSFLKSKF 155
           V+P N+ Q+PLI ++   + SFLK KF
Sbjct: 900 VWPNNQPQIPLILNQSVINSSFLK*KF 820


>TC221876 similar to UP|Q9LU01 (Q9LU01) Arabidopsis thaliana genomic DNA,
          chromosome 5, TAC clone:K15C23, partial (22%)
          Length = 468

 Score = 28.1 bits (61), Expect = 2.7
 Identities = 14/24 (58%), Positives = 16/24 (66%)
 Frame = +1

Query: 16 SHIFTLTSFLLSLLLLFSPSPSST 39
          SH   L  FLL LLLLF PS ++T
Sbjct: 25 SHCHRLLPFLLLLLLLFPPSTTTT 96


>BI969700 
          Length = 757

 Score = 28.1 bits (61), Expect = 2.7
 Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 6/84 (7%)
 Frame = +2

Query: 4   ICPISKAIYMTLSHIFTLTSFLLSLLLLFSPS----PSSTLRFQNIVHNSTKNFEIFM-- 57
           +C I K  +  LS+ FTL    LS+L L SPS    P+  LR      N  ++F I    
Sbjct: 314 LCHILKRDFFDLSNPFTLLMTALSMLGLLSPSLSLFPTPLLRL-----NEARSFLIAFSS 478

Query: 58  ARVEGSSSQPTKQHEPNVNLPVNT 81
           + V  + +  +    P++ LP+++
Sbjct: 479 SAVATAYNSSSGLDVPDLELPLDS 550


>TC205307 similar to GB|AAQ73179.1|34485583|AY341888 extracellular calcium
           sensing receptor {Arabidopsis thaliana;} , partial (26%)
          Length = 540

 Score = 27.3 bits (59), Expect = 4.5
 Identities = 15/29 (51%), Positives = 18/29 (61%)
 Frame = +3

Query: 16  SHIFTLTSFLLSLLLLFSPSPSSTLRFQN 44
           SHI   TS  +SLL LF+PS  S  R Q+
Sbjct: 198 SHIALPTSTTISLLALFAPSKRSQSRCQH 284


>AW459912 similar to GP|12580867|em 60S ribosomal protein L13E {Picea abies},
           partial (56%)
          Length = 349

 Score = 27.3 bits (59), Expect = 4.5
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +3

Query: 90  KEAEDKIWKSQVIISCPNSSHEYLGPLSDESD 121
           K  +D  WK++++  CP + H+ LG L   +D
Sbjct: 204 KPGKDFHWKNRMLQECPRNLHQLLGLLLITAD 299


>TC221918 weakly similar to UP|Q6H890 (Q6H890) BRAP2-like protein, partial
           (15%)
          Length = 692

 Score = 27.3 bits (59), Expect = 4.5
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -1

Query: 109 SHEYLGPLSDESDDQKKLDAVFPWNE 134
           SH YLGP S +  D+     VFP+N+
Sbjct: 599 SHSYLGPTSQDKQDK----LVFPYNQ 534


>AW185036 similar to GP|27413633|gb xanthine dehydrogenase 1 {Arabidopsis
           thaliana}, partial (3%)
          Length = 450

 Score = 26.6 bits (57), Expect = 7.7
 Identities = 12/35 (34%), Positives = 20/35 (56%)
 Frame = -3

Query: 75  VNLPVNTQFMEEPDVKEAEDKIWKSQVIISCPNSS 109
           +N  + T F+E+  + +AE  IW + V   CP S+
Sbjct: 397 LNRLIRTSFIEQRGI*KAEAAIWATLVCKPCPIST 293


>CA801082 similar to GP|15294212|gb| AT5g17550/K10A8_30 {Arabidopsis
          thaliana}, partial (29%)
          Length = 345

 Score = 26.6 bits (57), Expect = 7.7
 Identities = 11/22 (50%), Positives = 17/22 (77%)
 Frame = +3

Query: 16 SHIFTLTSFLLSLLLLFSPSPS 37
          +H+ TLT+F + L ++FSPS S
Sbjct: 54 THLKTLTNFSIVLWMIFSPSTS 119


>TC203574 weakly similar to UP|Q850I3 (Q850I3) Gag-pol polyprotein
           (Fragment), partial (25%)
          Length = 1037

 Score = 26.6 bits (57), Expect = 7.7
 Identities = 7/13 (53%), Positives = 12/13 (91%)
 Frame = -2

Query: 95  KIWKSQVIISCPN 107
           ++W+S V++SCPN
Sbjct: 439 QVWRSSVVVSCPN 401


>TC206966 similar to UP|Q94EI3 (Q94EI3) AT5g17550/K10A8_30, partial (87%)
          Length = 1018

 Score = 26.6 bits (57), Expect = 7.7
 Identities = 11/22 (50%), Positives = 17/22 (77%)
 Frame = +3

Query: 16 SHIFTLTSFLLSLLLLFSPSPS 37
          +H+ TLT+F + L ++FSPS S
Sbjct: 66 THLKTLTNFSIVLWMIFSPSTS 131


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.317    0.134    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,172,457
Number of Sequences: 63676
Number of extensions: 126092
Number of successful extensions: 917
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 912
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 914
length of query: 194
length of database: 12,639,632
effective HSP length: 92
effective length of query: 102
effective length of database: 6,781,440
effective search space: 691706880
effective search space used: 691706880
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.2 bits)