BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC140721.8 + phase: 0 /pseudo
(59 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC206635 similar to UP|Q9SC39 (Q9SC39) Germin-like protein (Frag... 58 1e-09
TC206636 homologue to UP|Q9SC39 (Q9SC39) Germin-like protein (Fr... 57 2e-09
BI427150 47 2e-06
TC227306 similar to GB|AAB51752.1|1934730|ATU95036 germin-like p... 31 0.15
TC221249 weakly similar to UP|GL32_ARATH (Q9SR72) Germin-like pr... 30 0.33
TC224703 similar to UP|RHRE_PEA (Q9S8P4) Rhicadhesin receptor pr... 29 0.43
TC232400 weakly similar to UP|Q8W2K5 (Q8W2K5) Phragmoplastin-int... 29 0.56
AW233823 weakly similar to SP|Q9S8P4|RHRE Rhicadhesin receptor p... 28 0.74
TC227305 similar to GB|AAB51752.1|1934730|ATU95036 germin-like p... 28 0.74
BI424039 homologue to GP|23093676|gb| CG32071-PA {Drosophila mel... 27 1.6
TC213376 27 1.6
TC211313 weakly similar to UP|Q9SC38 (Q9SC38) Germin-like protei... 26 3.7
AI440812 similar to GP|11692852|gb| At1g09560 {Arabidopsis thali... 26 4.8
BI320231 weakly similar to GP|22086620|gb S-locus receptor-like ... 25 8.1
>TC206635 similar to UP|Q9SC39 (Q9SC39) Germin-like protein (Fragment),
partial (95%)
Length = 897
Score = 57.8 bits (138), Expect = 1e-09
Identities = 27/39 (69%), Positives = 34/39 (86%)
Frame = +3
Query: 1 MKILYLLVSILALASSIAFAYDPSPLQDFCVAIKDPKDG 39
MK++YLLV++LAL S++ AYDPSPLQDFCVA K+ KDG
Sbjct: 66 MKVVYLLVALLALTSTVVSAYDPSPLQDFCVAAKE-KDG 179
>TC206636 homologue to UP|Q9SC39 (Q9SC39) Germin-like protein (Fragment),
complete
Length = 931
Score = 57.0 bits (136), Expect = 2e-09
Identities = 27/39 (69%), Positives = 33/39 (84%)
Frame = +2
Query: 1 MKILYLLVSILALASSIAFAYDPSPLQDFCVAIKDPKDG 39
MK++Y LV+ILAL S++ AYDPSPLQDFCVA K+ KDG
Sbjct: 59 MKVVYFLVAILALTSTVVSAYDPSPLQDFCVAAKE-KDG 172
>BI427150
Length = 422
Score = 47.0 bits (110), Expect = 2e-06
Identities = 21/24 (87%), Positives = 21/24 (87%)
Frame = +2
Query: 16 SIAFAYDPSPLQDFCVAIKDPKDG 39
SIAFAYDPSPLQDFCVAI D K G
Sbjct: 2 SIAFAYDPSPLQDFCVAINDTKTG 73
>TC227306 similar to GB|AAB51752.1|1934730|ATU95036 germin-like protein
{Arabidopsis thaliana;} , partial (46%)
Length = 446
Score = 30.8 bits (68), Expect = 0.15
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +1
Query: 5 YLLVSILALASSIAFAYDPSPLQDFCVAI 33
+ + I A S AFA DP LQD CVA+
Sbjct: 118 FAIFVIFCCAISFAFASDPDTLQDLCVAL 204
>TC221249 weakly similar to UP|GL32_ARATH (Q9SR72) Germin-like protein
subfamily 3 member 2 precursor, partial (58%)
Length = 1000
Score = 29.6 bits (65), Expect = 0.33
Identities = 18/41 (43%), Positives = 25/41 (60%)
Frame = +2
Query: 2 KILYLLVSILALASSIAFAYDPSPLQDFCVAIKDPKDGDYS 42
K+ LLV +L + + A A DP P+ DFC+A K P D +S
Sbjct: 95 KVAVLLVVLLFIIA--ALASDPDPVMDFCIA-KSP-DNSFS 205
>TC224703 similar to UP|RHRE_PEA (Q9S8P4) Rhicadhesin receptor precursor
(Germin-like protein), partial (91%)
Length = 1092
Score = 29.3 bits (64), Expect = 0.43
Identities = 14/28 (50%), Positives = 16/28 (57%)
Frame = +1
Query: 5 YLLVSILALASSIAFAYDPSPLQDFCVA 32
+L LAL + A DP PLQD CVA
Sbjct: 145 FLQAVTLALVLATVSASDPDPLQDLCVA 228
>TC232400 weakly similar to UP|Q8W2K5 (Q8W2K5) Phragmoplastin-interacting
protein PHIP1, partial (8%)
Length = 621
Score = 28.9 bits (63), Expect = 0.56
Identities = 14/32 (43%), Positives = 18/32 (55%)
Frame = -1
Query: 4 LYLLVSILALASSIAFAYDPSPLQDFCVAIKD 35
L LLV +L L +S+A P PL F A+ D
Sbjct: 459 LSLLVVVLVLVNSVASGISPPPLDSFSSAVVD 364
>AW233823 weakly similar to SP|Q9S8P4|RHRE Rhicadhesin receptor precursor
(Germin-like protein). [Garden pea] {Pisum sativum},
partial (64%)
Length = 454
Score = 28.5 bits (62), Expect = 0.74
Identities = 13/22 (59%), Positives = 14/22 (63%)
Frame = +2
Query: 11 LALASSIAFAYDPSPLQDFCVA 32
LAL + A DP PLQD CVA
Sbjct: 8 LALVLATVSASDPDPLQDLCVA 73
>TC227305 similar to GB|AAB51752.1|1934730|ATU95036 germin-like protein
{Arabidopsis thaliana;} , partial (96%)
Length = 1034
Score = 28.5 bits (62), Expect = 0.74
Identities = 12/29 (41%), Positives = 16/29 (54%)
Frame = +3
Query: 5 YLLVSILALASSIAFAYDPSPLQDFCVAI 33
+ ++ A S FA DP LQD CVA+
Sbjct: 126 FAILVFFCCAISFTFASDPDTLQDLCVAL 212
>BI424039 homologue to GP|23093676|gb| CG32071-PA {Drosophila melanogaster},
partial (6%)
Length = 380
Score = 27.3 bits (59), Expect = 1.6
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = +2
Query: 45 THLVYLWLALILPL 58
THL Y+W AL+LPL
Sbjct: 296 THLCYIWRALLLPL 337
>TC213376
Length = 390
Score = 27.3 bits (59), Expect = 1.6
Identities = 14/25 (56%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
Frame = +3
Query: 26 LQDFC-VAIKDPKDGDYSDLTHLVY 49
LQ C AI++PK+GDYS HL+Y
Sbjct: 51 LQFLCYAAIRNPKEGDYS---HLIY 116
>TC211313 weakly similar to UP|Q9SC38 (Q9SC38) Germin-like protein
(Fragment), partial (88%)
Length = 737
Score = 26.2 bits (56), Expect = 3.7
Identities = 11/17 (64%), Positives = 13/17 (75%)
Frame = +3
Query: 40 DYSDLTHLVYLWLALIL 56
+Y THLVYLWLA I+
Sbjct: 114 NYQG*THLVYLWLA*IM 164
>AI440812 similar to GP|11692852|gb| At1g09560 {Arabidopsis thaliana},
partial (23%)
Length = 367
Score = 25.8 bits (55), Expect = 4.8
Identities = 15/32 (46%), Positives = 20/32 (61%)
Frame = +2
Query: 1 MKILYLLVSILALASSIAFAYDPSPLQDFCVA 32
M L LLV++ L ++ A + DP LQD CVA
Sbjct: 161 MANLLLLVTLAQLLAT-AISSDPDLLQDLCVA 253
>BI320231 weakly similar to GP|22086620|gb S-locus receptor-like kinase
RLK14 {Oryza sativa}, partial (15%)
Length = 422
Score = 25.0 bits (53), Expect = 8.1
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +3
Query: 26 LQDFCVAIKDPKDGDYSDLTHLVYLWL 52
L+DFC++IK P G + +++ V +L
Sbjct: 21 LEDFCISIKIPD*GLFIEISKQVMFYL 101
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.328 0.145 0.443
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,241,250
Number of Sequences: 63676
Number of extensions: 35559
Number of successful extensions: 224
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 224
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 224
length of query: 59
length of database: 12,639,632
effective HSP length: 35
effective length of query: 24
effective length of database: 10,410,972
effective search space: 249863328
effective search space used: 249863328
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 52 (24.6 bits)
Medicago: description of AC140721.8