BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC140721.3 + phase: 0 /pseudo
(1439 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BI317550 weakly similar to GP|9759590|dbj| polyprotein-like {Ara... 61 3e-09
TC207027 weakly similar to UP|Q9LW95 (Q9LW95) KED, partial (17%) 60 5e-09
TC231899 similar to UP|Q850H7 (Q850H7) Gag-pol polyprotein (Frag... 57 4e-08
BM731380 46 1e-04
CO985160 44 4e-04
TC204439 UP|Q84VI4 (Q84VI4) Gag-pol polyprotein, complete 41 0.003
TC203439 weakly similar to UP|Q9LX02 (Q9LX02) ESTs AU082316(E336... 40 0.007
TC214570 homologue to PIR|T05766|T05766 peptidylprolyl isomerase... 40 0.007
TC207029 weakly similar to UP|Q7R8E7 (Q7R8E7) Ran-binding protei... 39 0.013
TC231544 weakly similar to UP|Q9FLR2 (Q9FLR2) Polyprotein-like, ... 38 0.037
TC223605 38 0.037
TC213885 weakly similar to UP|Q9VUB7 (Q9VUB7) CG32133-PA, partia... 37 0.048
TC220333 weakly similar to UP|MNN4_YEAST (P36044) MNN4 protein, ... 37 0.063
BF008677 similar to PIR|T51328|T513 transcription initiation fac... 37 0.063
BE807600 similar to GP|24461867|gb CTV.22 {Poncirus trifoliata},... 37 0.082
AW396581 37 0.082
TC207028 similar to UP|Q9LW95 (Q9LW95) KED, partial (13%) 32 0.099
TC205192 36 0.11
TC204168 UP|Q7XXT2 (Q7XXT2) Prepro beta-conglycinin alpha prime ... 36 0.11
BU550032 similar to GP|27901696|gb| gag-pol polyprotein {Vitis v... 36 0.14
>BI317550 weakly similar to GP|9759590|dbj| polyprotein-like {Arabidopsis
thaliana}, partial (18%)
Length = 421
Score = 61.2 bits (147), Expect = 3e-09
Identities = 53/134 (39%), Positives = 70/134 (51%), Gaps = 1/134 (0%)
Frame = -3
Query: 1080 NRLVESGMRN*LLLFWLKTIYKLHLIIPCLSRKLNHYSQFFWCMLMISFLLEIL*VNLII 1139
++ V SGM++*L+ F K Y I P L S W M M SFL I +NL
Sbjct: 401 SKQVGSGMKS*LICFSKKVTYNQFQITPYLLSPKEILSLHCWYM*MTSFLQVIQLMNLTG 222
Query: 1140 SSLFWILYSKSKT*VN*NTS*VLRLLIPNWGFLCVKGNIV*TYFLIQEL*VPNQFLLHLI 1199
S +F I SK K V+*NT L+LLI +W +GNIV IQ+ N L HL+
Sbjct: 221 SRMFLI*LSKLKIWVS*NTFLGLKLLILDWVLPSHRGNIVWICLRIQDYLGAN-LLAHLL 45
Query: 1200 S-P*SCIMI*VLLL 1212
+ P*SC ++ LL+
Sbjct: 44 THP*SCTVLQALLM 3
>TC207027 weakly similar to UP|Q9LW95 (Q9LW95) KED, partial (17%)
Length = 1005
Score = 60.5 bits (145), Expect = 5e-09
Identities = 94/373 (25%), Positives = 165/373 (44%)
Frame = -2
Query: 553 CILILLLIIIKMLVIFAILPSTNIYLSILVPHMLLLNLNFSI*IFGVLFQLLQFMVIDIF 612
C IL+L+I M F + Y+S+L L ++NF F +L Q + + + +
Sbjct: 884 CSSILVLLIDHMTFSFNFF-NLPFYISLLFKEWLYFSVNF----FKLLLQSAKILGLVL- 723
Query: 613 SPF*MTTPDFSGSFFLKPKLKCLHMLRILLL*FRIIFTPPLNSLELIMALNSCYLLFMLH 672
S +FFL +LLL F F + L I++ F+
Sbjct: 722 ----------SSNFFL-----------LLLLVFVFFFLLLFHFLPTILS-------FIFF 627
Query: 673 MALFTRNLV*KLPNKMVELKENINTF*MLVELCFISLNFLLPFGLMLYIMLFSS*IEFLH 732
F +PN+ N N + + F++L F+L F + I+LF I FL
Sbjct: 626 FTFFFYFFYINIPNR------NFN-----LAILFLTLLFILLF--LFVILLFLLLILFL- 489
Query: 733 HYFITNHLTSFFIINSLILPFSKFLVVYVMLPLYILIEPNCNLELESLYS*VTSLVIRVL 792
F+ + + FII SL L F + +++L L++L+ L+ + L+ +
Sbjct: 488 --FLISFIILTFIIFSLFL*CVCFFI-FILLFLFLLL----------LFIFLFLLLFTIT 348
Query: 793 LSMIFNLERFLCQDMLLFMKTISLTLILHPLLLLIGNIFLIFPLYLILILLSLPVNLQSL 852
+S F +LLF+ +I PL L N ++F L+L+L ++ LP+ + L
Sbjct: 347 VSFFF---------VLLFLIPFIFPIIFFPLDFLCINFVILFLLFLLLFII-LPI-IFFL 201
Query: 853 MILLLLLHQLYLLLLLLHLFHLLFPDILPETPLLHLTSKIIFVTIFKLRHIIFLIFFPII 912
+ LL + + + LLL LF LLF + P++ +++++ L +F+ FF
Sbjct: 200 LDLLCISFAILVFLLLFLLFLLLFIIL----PIIFFPLDLLYISFVTL---VFVFFF--- 51
Query: 913 IFLTIILLLLCLY 925
L +++LLL L+
Sbjct: 50 -LLLLLILLLFLF 15
Score = 56.2 bits (134), Expect = 1e-07
Identities = 69/237 (29%), Positives = 105/237 (44%), Gaps = 13/237 (5%)
Frame = -2
Query: 703 ELCFISLNF---LLPFGLMLYIMLFSS*IEFLHHYFITNHLTSFFIINSLILPFSKFLVV 759
E + S+NF LL +L ++L S+ L F+ L F + + IL F F
Sbjct: 794 EWLYFSVNFFKLLLQSAKILGLVLSSNFFLLLLLVFVFFFLLLFHFLPT-ILSFIFFFTF 618
Query: 760 YVMLPLYILIEPNCNLELESLYS*VTSLVIRVLLSMIFNLERFLCQDMLLFMKT-ISLTL 818
+ YI I PN N L L+ L + +L +F + FL + LF+ + I LT
Sbjct: 617 FFYF-FYINI-PNRNFNLAILF-----LTLLFILLFLFVILLFLLLILFLFLISFIILTF 459
Query: 819 ILHPLLLLIGNIFLIFPLYLILILLSLPVNLQSLMILLLLLHQLYLLLLLLHLFHLLFPD 878
I+ L L F+ L+L L+LL + + LLL + +LL L +FP
Sbjct: 458 IIFSLFL*CVCFFIFILLFLFLLLLFI------FLFLLLFTITVSFFFVLLFLIPFIFPI 297
Query: 879 ILPETPLLHLTSKIIFVTIFKLRHIIFLIF---------FPIIIFLTIILLLLCLYI 926
I L + I+F+ L I+ +IF F I++FL + LL L L+I
Sbjct: 296 IFFPLDFLCINFVILFLLFLLLFIILPIIFFLLDLLCISFAILVFLLLFLLFLLLFI 126
Score = 43.5 bits (101), Expect = 7e-04
Identities = 71/265 (26%), Positives = 116/265 (42%), Gaps = 6/265 (2%)
Frame = -2
Query: 501 LLILSFLLYLKVL------VMLFLFPIVIRIVNMYLTMPYGTLDLVICLIKDFI*CLACI 554
LL+L F+ + +L ++ F+F Y+ +P +L I F+ L +
Sbjct: 704 LLLLVFVFFFLLLFHFLPTILSFIFFFTFFFYFFYINIPNRNFNLAIL----FLTLLFIL 537
Query: 555 LILLLIIIKMLVIFAILPSTNIYLSILVPHMLLLNLNFSI*IFGVLFQLLQFMVIDIFSP 614
L L +I++ +L+I + + I L+ ++ + L + F I I LF LL F+ + +
Sbjct: 536 LFLFVILLFLLLILFLFLISFIILTFIIFSLFL*CVCFFIFILLFLFLLLLFIFLFLLL- 360
Query: 615 F*MTTPDFSGSFFLKPKLKCLHMLRILLL*FRIIFTPPLNSLELIMALNSCYLLFMLHMA 674
F +T F FL P + F IIF P L + +LF+L +
Sbjct: 359 FTITVSFFFVLLFLIPFI------------FPIIFFP------LDFLCINFVILFLLFLL 234
Query: 675 LFTRNLV*KLPNKMVELKENINTF*MLVELCFISLNFLLPFGLMLYIMLFSS*IEFLHHY 734
LF LP L +F +LV L L FLL F ++L I+ F ++ L+
Sbjct: 233 LFII-----LPIIFFLLDLLCISFAILVFLLLFLL-FLLLF-IILPIIFFP--LDLLYIS 81
Query: 735 FITNHLTSFFIINSLILPFSKFLVV 759
F+T FF++ LIL F +V
Sbjct: 80 FVTLVFVFFFLLLLLILLLFLFTIV 6
Score = 38.5 bits (88), Expect = 0.022
Identities = 52/196 (26%), Positives = 82/196 (41%), Gaps = 3/196 (1%)
Frame = -2
Query: 749 LILPFSKFLVVYVMLPLYILIEPNCNLELESLYS*VTSLVIRVLLSMIFNLERFLCQDML 808
L++ F + LP YI + L E LY V + + + I L +L
Sbjct: 866 LLIDHMTFSFNFFNLPFYISL-----LFKEWLYFSVNFFKLLLQSAKILGLVLSSNFFLL 702
Query: 809 LFMKTISLTLILHPLLLLIGNIFLIFPLYLILILLSLP---VNLQSLMILLLLLHQLYLL 865
L + + L+L L I + F + +++P NL +++ L LL L+L
Sbjct: 701 LLLVFVFFFLLLFHFLPTILSFIFFFTFFFYFFYINIPNRNFNL-AILFLTLLFILLFLF 525
Query: 866 LLLLHLFHLLFPDILPETPLLHLTSKIIFVTIFKLRHIIFLIFFPIIIFLTIILLLLCLY 925
++LL L +LF L L S II L IIF +F + F ILL L L
Sbjct: 524 VILLFLLLILF---------LFLISFII------LTFIIFSLFL*CVCFFIFILLFLFLL 390
Query: 926 IHNLSLNPMLKQVNMS 941
+ + L +L + +S
Sbjct: 389 LLFIFLFLLLFTITVS 342
Score = 31.6 bits (70), Expect = 2.6
Identities = 66/280 (23%), Positives = 120/280 (42%), Gaps = 7/280 (2%)
Frame = -2
Query: 162 LIVLVFILVVVLHL--KLLRFIEMRIRLCNFLQD*MINFLLLELKFFSL-ILFLL*TKFI 218
L+V VF +++ H +L FI F ++ + + F+L ILFL +
Sbjct: 698 LLVFVFFFLLLFHFLPTILSFIFFFTFFFYFF------YINIPNRNFNLAILFLTLLFIL 537
Query: 219 L*LFRKKVIMLLLLL*VYLLIPPFKSMLLIIENLKVVAKASLQISLLDSVLSVIVQIIL* 278
L LF VI+L LLL ++L + F + II +L + + +L + ++L
Sbjct: 536 LFLF---VILLFLLLILFLFLISFIILTFIIFSLFL*C-----VCFFIFILLFLFLLLLF 381
Query: 279 IFVT*NMVITMLTNLHQV*MLLLKKILKMV----QCLLLDWVLLQALLLLVFLKSN*LNL 334
IF+ ++ T+ + V + L+ I ++ L +++V+L L LL+F+
Sbjct: 380 IFLF-LLLFTITVSFFFVLLFLIPFIFPIIFFPLDFLCINFVILFLLFLLLFII------ 222
Query: 335 CPCYNNQIWLFQHLLLHKLPPITLHLPAFPLQILLKVYLLLFLL*QVNLLFG*LIMVLMN 394
LP I L + + V+LLLF LLF L ++L
Sbjct: 221 ------------------LPIIFFLLDLLCISFAILVFLLLF------LLFLLLFIILPI 114
Query: 395 IYVVILLHLVPFIE*NLFMFPYPMVTLC*LILLVMSLSIP 434
I+ + L + F+ +F + + L ++LL + +P
Sbjct: 113 IFFPLDLLYISFV---TLVFVFFFLLLLLILLLFLFTIVP 3
>TC231899 similar to UP|Q850H7 (Q850H7) Gag-pol polyprotein (Fragment), partial
(30%)
Length = 687
Score = 57.4 bits (137), Expect = 4e-08
Identities = 48/128 (37%), Positives = 64/128 (49%), Gaps = 3/128 (2%)
Frame = +3
Query: 1282 YKDFQMLAGLAV*ILENLFQVNVSS*VTL*SLGEQRNKSQYLDLPLKLNIGHWLQLLVNY 1341
Y+D ML GLAV + L Q VSS + LG+ RN+ L L KLNI WL LLVN
Sbjct: 18 YQDIVMLIGLAVPWIGGLHQAIVSSLEEILFLGKARNRRL*LGLVQKLNIDRWLWLLVNS 197
Query: 1342 NGFYTFSEIYMFHAPSCLFYTVIIKVQYTLLLTLFFMSALNTWKLTVT*LEKSY---KVG 1398
G F + F VII++ + L T FM L+ +L V E+S+ ++
Sbjct: 198 CGLNNFCKN*GFVKSCK*SCIVIIRLLFILPQTQSFMKGLSI*RLIVISFERSFCPRRLS 377
Query: 1399 LSSCFLFL 1406
LSS L +
Sbjct: 378 LSSLVLMI 401
>BM731380
Length = 433
Score = 46.2 bits (108), Expect = 1e-04
Identities = 29/67 (43%), Positives = 44/67 (65%)
Frame = +2
Query: 809 LFMKTISLTLILHPLLLLIGNIFLIFPLYLILILLSLPVNLQSLMILLLLLHQLYLLLLL 868
+F+ + + + LH LLLL+ + L+ LYL+L+LL L + L L++LLLLL L LLL+
Sbjct: 197 IFLGRLPVMMHLHLLLLLLLLLVLVLGLYLVLVLLLLVLLL--LLVLLLLLQVLLLLLVF 370
Query: 869 LHLFHLL 875
L L +L
Sbjct: 371 LLLLQVL 391
Score = 41.2 bits (95), Expect = 0.003
Identities = 33/79 (41%), Positives = 45/79 (56%)
Frame = +2
Query: 802 FLCQDMLLFMKTISLTLILHPLLLLIGNIFLIFPLYLILILLSLPVNLQSLMILLLLLHQ 861
F+ L M + L L+L LL+L+ ++L+ L L+L+LL L V L L +LLLLL
Sbjct: 194 FIFLGRLPVMMHLHLLLLLLLLLVLVLGLYLVLVL-LLLVLLLLLVLLLLLQVLLLLLVF 370
Query: 862 LYLLLLLLHLFHLLFPDIL 880
L LL +LL L LL L
Sbjct: 371 LLLLQVLLLLLVLLLAQFL 427
Score = 33.1 bits (74), Expect = 0.91
Identities = 25/62 (40%), Positives = 35/62 (56%)
Frame = +2
Query: 807 MLLFMKTISLTLILHPLLLLIGNIFLIFPLYLILILLSLPVNLQSLMILLLLLHQLYLLL 866
+LL + + L L L +LLL+ + L+ L L+ +LL L V L L +LLLLL L
Sbjct: 245 LLLLLLVLVLGLYLVLVLLLLVLLLLLVLLLLLQVLLLLLVFLLLLQVLLLLLVLLLAQF 424
Query: 867 LL 868
LL
Sbjct: 425 LL 430
Score = 33.1 bits (74), Expect = 0.91
Identities = 26/85 (30%), Positives = 48/85 (55%)
Frame = +2
Query: 840 LILLSLPVNLQSLMILLLLLHQLYLLLLLLHLFHLLFPDILPETPLLHLTSKIIFVTIFK 899
+ L LPV + ++LLLLL LL+L+L L+ +L LL L ++ V +
Sbjct: 197 IFLGRLPVMMHLHLLLLLLL----LLVLVLGLYLVLV--------LLLLVLLLLLVLLLL 340
Query: 900 LRHIIFLIFFPIIIFLTIILLLLCL 924
L+ ++ L+ F +++ + ++LL+L L
Sbjct: 341 LQVLLLLLVFLLLLQVLLLLLVLLL 415
Score = 32.3 bits (72), Expect = 1.5
Identities = 17/65 (26%), Positives = 40/65 (61%)
Frame = +2
Query: 551 LACILILLLIIIKMLVIFAILPSTNIYLSILVPHMLLLNLNFSI*IFGVLFQLLQFMVID 610
L +L+LLL+++ +L ++ +L + L +L+ +LLL + + +F +L Q+L +++
Sbjct: 230 LHLLLLLLLLLVLVLGLYLVLVLLLLVLLLLLVLLLLLQVLLLLLVFLLLLQVLLLLLVL 409
Query: 611 IFSPF 615
+ + F
Sbjct: 410 LLAQF 424
>CO985160
Length = 777
Score = 44.3 bits (103), Expect = 4e-04
Identities = 40/124 (32%), Positives = 65/124 (52%), Gaps = 10/124 (8%)
Frame = +3
Query: 808 LLFMKTISLTLILHPLLLLIGNIFLIFPLYLILI----LLSLPVNLQSLMILLLLLHQLY 863
LL ++ + L L L LLLL L+ L L+L+ LL L + L+ L++LLL L +L
Sbjct: 390 LLKLR*LLLLLDLRKLLLLQLRKLLLLDLLLLLLQLRKLLLLLLQLRKLLLLLLQLRKLL 569
Query: 864 LLLLLLHLFHLLFPDILPETPLLHLTSKII------FVTIFKLRHIIFLIFFPIIIFLTI 917
LLLL L LL + LL K++ + + +LR ++ L+ +++ L +
Sbjct: 570 LLLLELRKLLLLLLQLRKLLLLLLELRKLLLLHVR*LLLLLQLRKMLLLVLHLLMLLLHL 749
Query: 918 ILLL 921
+LLL
Sbjct: 750 LLLL 761
Score = 36.2 bits (82), Expect = 0.11
Identities = 39/131 (29%), Positives = 67/131 (50%), Gaps = 4/131 (3%)
Frame = +3
Query: 199 LLLELKFFSLI----LFLL*TKFIL*LFRKKVIMLLLLL*VYLLIPPFKSMLLIIENLKV 254
LLL+L+ L+ L LL +L RK +++LL L + LL+ + +LL++ L+
Sbjct: 414 LLLDLRKLLLLQLRKLLLLDLLLLLLQLRKLLLLLLQLRKLLLLLLQLRKLLLLLLELRK 593
Query: 255 VAKASLQISLLDSVLSVIVQIIL*IFVT*NMVITMLTNLHQV*MLLLKKILKMVQCLLLD 314
+ LQ+ L +L + +++L LH *+LLL ++ KM+ +L
Sbjct: 594 LLLLLLQLRKLLLLLLELRKLLL---------------LHVR*LLLLLQLRKMLLLVLHL 728
Query: 315 WVLLQALLLLV 325
+LL LLLL+
Sbjct: 729 LMLLLHLLLLL 761
Score = 36.2 bits (82), Expect = 0.11
Identities = 32/102 (31%), Positives = 59/102 (57%), Gaps = 2/102 (1%)
Frame = +3
Query: 153 RNYLHIDISLIVLVFILVVVLHLK--LLRFIEMRIRLCNFLQD*MINFLLLELKFFSLIL 210
R L + + ++L+ +L+++L L+ LL +++R L LQ + LLLEL+ L+L
Sbjct: 429 RKLLLLQLRKLLLLDLLLLLLQLRKLLLLLLQLRKLLLLLLQLRKLLLLLLELRKLLLLL 608
Query: 211 FLL*TKFIL*LFRKKVIMLLLLL*VYLLIPPFKSMLLIIENL 252
L K +L L + ++LL + *+ LL+ + MLL++ +L
Sbjct: 609 LQL-RKLLLLLLELRKLLLLHVR*LLLLLQ-LRKMLLLVLHL 728
Score = 35.4 bits (80), Expect = 0.18
Identities = 46/155 (29%), Positives = 75/155 (47%)
Frame = +3
Query: 818 LILHPLLLLIGNIFLIFPLYLILILLSLPVNLQSLMILLLLLHQLYLLLLLLHLFHLLFP 877
L+L LL + + L+ L+ +L L L + L +LLL L +L LL LLL L
Sbjct: 327 LLLRLQLL*LRKLLLLL*LWELLKLR*LLLLLDLRKLLLLQLRKLLLLDLLLLLLQ---- 494
Query: 878 DILPETPLLHLTSKIIFVTIFKLRHIIFLIFFPIIIFLTIILLLLCLYIHNLSLNPMLKQ 937
L + LL L + + + + +LR ++ L ++ ++LLLL L L L + K
Sbjct: 495 --LRKLLLLLLQLRKLLLLLLQLRKLLLL----LLELRKLLLLLLQLRKLLLLLLELRKL 656
Query: 938 VNMSVGCMLCKLNFKLLRKLVLGNLWIYHQMLSLL 972
+ + V +L L + + LVL L + +L LL
Sbjct: 657 LLLHVR*LLLLLQLRKMLLLVLHLLMLLLHLLLLL 761
Score = 35.0 bits (79), Expect = 0.24
Identities = 39/125 (31%), Positives = 64/125 (51%), Gaps = 1/125 (0%)
Frame = +3
Query: 808 LLFMKTISLTLILHPLLLLIGNIFLIFPLYLILILLSLPVNLQSLMILLLLLHQLYLLLL 867
LL ++ + L L L LL L + L+ L +L+L + L L++LLL L +L LLLL
Sbjct: 345 LL*LRKLLLLL*LWELLKL-R*LLLLLDLRKLLLLQLRKLLLLDLLLLLLQLRKLLLLLL 521
Query: 868 LLHLFHLLFPDILPETPLLHLTSKIIFVTIFKLRHIIFLIF-FPIIIFLTIILLLLCLYI 926
L LL L + LL L + + + + +LR ++ L+ ++ L + LLL L +
Sbjct: 522 QLRKLLLLLLQ-LRKLLLLLLELRKLLLLLLQLRKLLLLLLELRKLLLLHVR*LLLLLQL 698
Query: 927 HNLSL 931
+ L
Sbjct: 699 RKMLL 713
Score = 34.7 bits (78), Expect = 0.31
Identities = 34/98 (34%), Positives = 52/98 (52%), Gaps = 9/98 (9%)
Frame = +3
Query: 787 LVIRVLLSMIFNLERFLCQDMLLFMKTISLTLILHPLLLLIGNI----FLIFPLYLILIL 842
L++ LL ++ L + L +L K + L L L LLLL+ + L+ L +L+L
Sbjct: 459 LLLLDLLLLLLQLRKLLLL-LLQLRKLLLLLLQLRKLLLLLLELRKLLLLLLQLRKLLLL 635
Query: 843 LSLPVNLQSLMI-----LLLLLHQLYLLLLLLHLFHLL 875
L + L+ L++ LLLLL +LLL+LHL LL
Sbjct: 636 L---LELRKLLLLHVR*LLLLLQLRKMLLLVLHLLMLL 740
Score = 32.7 bits (73), Expect = 1.2
Identities = 38/106 (35%), Positives = 53/106 (49%), Gaps = 12/106 (11%)
Frame = +3
Query: 795 MIFNLERFLCQDMLLFM----KTISLTLILHPLLLLIGNIFLIFPLYLILI-LLSLPVNL 849
++ L + L D+LL + K + L L L LLLL+ + + L L L LL L + L
Sbjct: 438 LLLQLRKLLLLDLLLLLLQLRKLLLLLLQLRKLLLLLLQLRKLLLLLLELRKLLLLLLQL 617
Query: 850 QSLMILLLLLHQLYLL-------LLLLHLFHLLFPDILPETPLLHL 888
+ L++LLL L +L LL LL L LL +L LLHL
Sbjct: 618 RKLLLLLLELRKLLLLHVR*LLLLLQLRKMLLLVLHLL--MLLLHL 749
Score = 31.2 bits (69), Expect = 3.4
Identities = 31/109 (28%), Positives = 58/109 (52%), Gaps = 9/109 (8%)
Frame = +3
Query: 156 LHIDISLIVLVFILVVVLHLKLLRFIEMRIRLCNFLQD*MINFLLLELKFFSLILFLL*T 215
L +D+ ++L+ + ++L LL +++R L LQ + LLL+L+ L+L L
Sbjct: 414 LLLDLRKLLLLQLRKLLLLDLLLLLLQLRKLLLLLLQLRKLLLLLLQLRKLLLLLLELRK 593
Query: 216 KFIL*LFRKKVIMLLLLL---------*VYLLIPPFKSMLLIIENLKVV 255
+L L +K+++LLL L *+ LL+ K +LL++ L ++
Sbjct: 594 LLLLLLQLRKLLLLLLELRKLLLLHVR*LLLLLQLRKMLLLVLHLLMLL 740
>TC204439 UP|Q84VI4 (Q84VI4) Gag-pol polyprotein, complete
Length = 4731
Score = 41.2 bits (95), Expect = 0.003
Identities = 49/180 (27%), Positives = 80/180 (44%), Gaps = 6/180 (3%)
Frame = +2
Query: 940 MSVGCMLCKLNFKLLRKLVLGNLWIYHQMLSLLDVDGFTKSNFMLMALLRDIKQDWLPKV 999
MS G MLCK N+ + + G+ ++ + L L G +++ M + + DWL K
Sbjct: 3230 MSSGSMLCKKNWSNSKGMKSGS*FLGLRELM*LAPSGSSRTKPMKKVS*PETRPDWLLKA 3409
Query: 1000 TIKLRAWIILIHILQLLNSQQSDL*LLYLPFIICIYINLMSIMPFFMVNFRKMCTC*FLL 1059
T++L+ ++ + QLL+ SD L+ L M F M K +
Sbjct: 3410 TLRLKV*TLMRLLPQLLDLSPSDYYLV*LVSSNSSCTRWM*RAHF*MDT*MKKS-----M 3574
Query: 1060 ASNQSN------KIKFASFKSLSMDLNRLVESGMRN*LLLFWLKTIYKLHLIIPCLSRKL 1113
S+Q + +I + + LSMD ++L E GM+ * K I + L P LS K+
Sbjct: 3575 WSSQRDLQTRLIQIMYTGSRRLSMD*SKLQELGMKG*QSSLLSKGIGREELTRPSLSNKM 3754
>TC203439 weakly similar to UP|Q9LX02 (Q9LX02) ESTs AU082316(E3368), partial
(27%)
Length = 1497
Score = 40.0 bits (92), Expect = 0.007
Identities = 37/110 (33%), Positives = 59/110 (53%), Gaps = 7/110 (6%)
Frame = -3
Query: 784 VTSLVIRVLLSMIF-------NLERFLCQDMLLFMKTISLTLILHPLLLLIGNIFLIFPL 836
++ L++ +LL ++F +L+R L + L + L+ H ++GN L PL
Sbjct: 652 ISLLLLLLLLLLLFLLSIPTLHLKRVLSRAPTLLPFSRDLSRPFH----VLGNT-LQQPL 488
Query: 837 YLILILLSLPVNLQSLMILLLLLHQLYLLLLLLHLFHLLFPDILPETPLL 886
+ L+ LS+P ++ L L LLLH L LLLL L L +P +LP P+L
Sbjct: 487 LVFLLFLSIPRHVPILRHLHLLLHLL--LLLLFFLSDLRYPLVLPIEPIL 344
>TC214570 homologue to PIR|T05766|T05766 peptidylprolyl isomerase M4E13.20 -
Arabidopsis thaliana {Arabidopsis thaliana;} , partial
(13%)
Length = 944
Score = 40.0 bits (92), Expect = 0.007
Identities = 47/133 (35%), Positives = 68/133 (50%), Gaps = 11/133 (8%)
Frame = -2
Query: 754 SKFLVVYVMLPLYILIEPNCNLELESLYS*VTSLVIRVLLSMIFNLERFLCQDMLLFMKT 813
S F+ ++++L L+ LI L + +S +S +F L FL + + L+
Sbjct: 757 SIFVFLFLVLLLFTLISITVILLSIANFSSSSSSFF------VFLLLLFLLRLV*LWRTI 596
Query: 814 ISLTLILHPLLLLIG---------NIFLIFPLYLILILLSLPVNLQSLMILLLLLHQLYL 864
+L L+L LLLL+ + LI L+L+L+LL L NL SL I LL LH L+L
Sbjct: 595 FNLILVL--LLLLLSFLLIRRGCFAVLLILLLFLLLLLL-LNFNLHSLFIYLLHLH-LFL 428
Query: 865 LLLLLHL--FHLL 875
L L H FHLL
Sbjct: 427 LFNLFHFIHFHLL 389
Score = 31.2 bits (69), Expect = 3.4
Identities = 28/84 (33%), Positives = 45/84 (53%)
Frame = -2
Query: 505 SFLLYLKVLVMLFLFPIVIRIVNMYLTMPYGTLDLVICLIKDFI*CLACILILLLIIIKM 564
SF ++L +L +L L + I N+ L + L L++ + C A +LILLL ++ +
Sbjct: 658 SFFVFLLLLFLLRLV*LWRTIFNLILVL----LLLLLSFLLIRRGCFAVLLILLLFLLLL 491
Query: 565 LVIFAILPSTNIYLSILVPHMLLL 588
L++ L S IYL L H+ LL
Sbjct: 490 LLLNFNLHSLFIYLLHL--HLFLL 425
Score = 30.8 bits (68), Expect = 4.5
Identities = 32/75 (42%), Positives = 41/75 (54%), Gaps = 14/75 (18%)
Frame = -2
Query: 816 LTLILHPLLLLIGNIFLIFPLYLILILLS-----------LPVNLQSLMILLLL---LHQ 861
L L L L+ L IF + L L+L+LLS L + L L++LLLL LH
Sbjct: 640 LLLFLLRLV*LWRTIFNLI-LVLLLLLLSFLLIRRGCFAVLLILLLFLLLLLLLNFNLHS 464
Query: 862 LYLLLLLLHLFHLLF 876
L++ LL LHLF LLF
Sbjct: 463 LFIYLLHLHLF-LLF 422
>TC207029 weakly similar to UP|Q7R8E7 (Q7R8E7) Ran-binding protein, partial
(19%)
Length = 712
Score = 39.3 bits (90), Expect = 0.013
Identities = 33/117 (28%), Positives = 56/117 (47%)
Frame = -2
Query: 808 LLFMKTISLTLILHPLLLLIGNIFLIFPLYLILILLSLPVNLQSLMILLLLLHQLYLLLL 867
LL +T L L+L LL+ L+F + +L+ LP+ L + L Y+ +
Sbjct: 354 LLLQRTKILGLVLSSNFLLL---LLVFVFFFLLLFHFLPIILFFIFFFTFLCGFFYINIP 184
Query: 868 LLHLFHLLFPDILPETPLLHLTSKIIFVTIFKLRHIIFLIFFPIIIFLTIILLLLCL 924
+ F+L F + +L L +I + + + +IFLIFF I+ F+ L L C+
Sbjct: 183 YRN-FNLAFLFLTLFFSILLLFFFVILLFLLLILFLIFLIFFIILAFVIFSLFL*CV 16
Score = 35.8 bits (81), Expect = 0.14
Identities = 24/111 (21%), Positives = 51/111 (45%), Gaps = 6/111 (5%)
Frame = -2
Query: 823 LLLLIGNIFLIFPLYLILILLSLPVNLQSLMILLLLLHQLYLLLLLLHLFHL---LFPDI 879
++ ++ I ++P L+ ++L LP++ +L L Y+ LL + F +
Sbjct: 525 IVCILRKIV*VYPKQLLYLILVLPIDYMTLSFSFFYL-PFYISLLFKEWLYFSVNFFKLL 349
Query: 880 LPETPLLHL---TSKIIFVTIFKLRHIIFLIFFPIIIFLTIILLLLCLYIH 927
L T +L L ++ ++ + +F ++ F PII+F LC + +
Sbjct: 348 LQRTKILGLVLSSNFLLLLLVFVFFFLLLFHFLPIILFFIFFFTFLCGFFY 196
>TC231544 weakly similar to UP|Q9FLR2 (Q9FLR2) Polyprotein-like, partial (16%)
Length = 662
Score = 37.7 bits (86), Expect = 0.037
Identities = 45/136 (33%), Positives = 62/136 (45%), Gaps = 2/136 (1%)
Frame = +1
Query: 1260 F*STSKVVQEEAYFFHEILLSLYKDFQMLAGLAV*ILENLFQVNVSS*VTL*SLGEQRNK 1319
F +TSK VQE+ E L + D M G V I + S V L*S G+ RNK
Sbjct: 31 FSNTSKDVQEKGSLLVENLPFKFLDSVMPIGQHVLIQASQSHGTASFLVVL*SHGKLRNK 210
Query: 1320 SQY--LDLPLKLNIGHWLQLLVNYNGFYTFSEIYMFHAPSCLFYTVIIKVQYTLLLTLFF 1377
+ + PLKL+I NY+G TF +I M L Y V IKV + +
Sbjct: 211 TLFPAHPHPLKLSIELSPPPHANYSGLLTF*KISML-----L*YIVTIKVLCNSCQSK*Y 375
Query: 1378 MSALNTWKLTVT*LEK 1393
+ ++ W+L T E+
Sbjct: 376 I--MDNWRLIATLFER 417
>TC223605
Length = 661
Score = 37.7 bits (86), Expect = 0.037
Identities = 50/205 (24%), Positives = 90/205 (43%), Gaps = 17/205 (8%)
Frame = -1
Query: 701 LVELCFISLNFLLPFGLMLYIMLFSS*IEFLHHYFITNHLT--------SFFIINSLILP 752
LV + FIS+ + + L L+I I F ++ HL S+FI LIL
Sbjct: 622 LVIVMFISILYTISSSLFLFIFSCCIDILFFFVFYFALHLVFYLFSLLDSYFIF--LILF 449
Query: 753 FSKFLVVYV-----MLPLYILIEPNCNLELESLYS*VTSLV---IRVLLSMIFNLERFLC 804
FS + ++ +L Y LI +C + L L ++S++ + L+ +F++
Sbjct: 448 FSFLVAFFI*YISELL*NYFLITSSCLIFLLFLLLNLSSIIRFCLVYLIQTVFSIVLLTK 269
Query: 805 QDMLLFMKTISLTLI-LHPLLLLIGNIFLIFPLYLILILLSLPVNLQSLMILLLLLHQLY 863
LF+ T+ +TL+ L+ + + + I +L L P + S + + + +Y
Sbjct: 268 FFAFLFVVTL*VTLVYLYQVF*FLVYLH*ILVFFLFFN*L-FPFSKSSTCLFSSVSYSIY 92
Query: 864 LLLLLLHLFHLLFPDILPETPLLHL 888
L H LLF ++ +LHL
Sbjct: 91 FPSFLAHHHSLLFRSVIIFLGVLHL 17
>TC213885 weakly similar to UP|Q9VUB7 (Q9VUB7) CG32133-PA, partial (4%)
Length = 540
Score = 37.4 bits (85), Expect = 0.048
Identities = 32/90 (35%), Positives = 49/90 (53%), Gaps = 1/90 (1%)
Frame = -3
Query: 787 LVIRVLLSMIFNLERFLCQDMLLFMKTISLTLILHPLLLLIGNIFLIFPLYLILILLSL- 845
L +R LL ++ E + +LL ++ L L+ LLL + + L+ L +L+LL L
Sbjct: 286 LQLRKLLLLL*LWELLKLRQLLLLLELRKLLLLELLLLL*LRKLLLLLQLRKLLLLLQLR 107
Query: 846 PVNLQSLMILLLLLHQLYLLLLLLHLFHLL 875
+ L + LLLLL +LLL+LHL LL
Sbjct: 106 KLLLLHVR*LLLLLQLRKMLLLVLHLLVLL 17
Score = 31.2 bits (69), Expect = 3.4
Identities = 33/99 (33%), Positives = 54/99 (54%)
Frame = -3
Query: 824 LLLIGNIFLIFPLYLILILLSLPVNLQSLMILLLLLHQLYLLLLLLHLFHLLFPDILPET 883
LLL+ ++ + L +L+LL L L ++LLL L +L LLL L L LL L +
Sbjct: 271 LLLLL*LWELLKLRQLLLLLELRKLLLLELLLLL*LRKLLLLLQLRKLLLLL---QLRKL 101
Query: 884 PLLHLTSKIIFVTIFKLRHIIFLIFFPIIIFLTIILLLL 922
LLH+ ++ + +LR ++ L ++ L ++LLLL
Sbjct: 100 LLLHVR*LLL---LLQLRKMLLL-----VLHLLVLLLLL 8
Score = 30.8 bits (68), Expect = 4.5
Identities = 31/89 (34%), Positives = 45/89 (49%)
Frame = -3
Query: 808 LLFMKTISLTLILHPLLLLIGNIFLIFPLYLILILLSLPVNLQSLMILLLLLHQLYLLLL 867
LL ++ + L L L LLLL + L+ L +L+LL L L L + LLL + LLL
Sbjct: 244 LLKLRQLLLLLELRKLLLL--ELLLLL*LRKLLLLLQLRKLLLLLQLRKLLLLHVR*LLL 71
Query: 868 LLHLFHLLFPDILPETPLLHLTSKIIFVT 896
LL L +L +LHL ++ +T
Sbjct: 70 LLQLRKMLL-------LVLHLLVLLLLLT 5
>TC220333 weakly similar to UP|MNN4_YEAST (P36044) MNN4 protein, partial (3%)
Length = 536
Score = 37.0 bits (84), Expect = 0.063
Identities = 29/83 (34%), Positives = 41/83 (48%), Gaps = 1/83 (1%)
Frame = -3
Query: 849 LQSLMILLLLLHQLYLLLLLLHLFHLLFPDILPETPLLHLTSKIIFVTIFKLRHIIFLIF 908
L L LLLLL + LLLL LF LF LP +PL L S +++ + LI
Sbjct: 228 LSLLFFLLLLLFLFFFLLLLFLLFLFLFFFFLPFSPLSFLLSSLLWQ--------VQLIL 73
Query: 909 FPIIIFLTI-ILLLLCLYIHNLS 930
+P+ + + L LC + +LS
Sbjct: 72 YPLFLLSSASSLFSLCPFDQSLS 4
>BF008677 similar to PIR|T51328|T513 transcription initiation factor sigma5
plastid -specific [imported] - Arabidopsis thaliana,
partial (10%)
Length = 475
Score = 37.0 bits (84), Expect = 0.063
Identities = 37/119 (31%), Positives = 60/119 (50%), Gaps = 1/119 (0%)
Frame = +3
Query: 807 MLLFMKTISLTLILHPLLLLIGNIFLIFPLYLILILLSLPVNLQSLMI-LLLLLHQLYLL 865
ML F+ SL+ ++ PL+L F L +LLS + +SL++ LLLLL LY L
Sbjct: 18 MLSFVLCPSLSSLVFPLVLFR------FELLFY*LLLSFH*SFRSLLLKLLLLLEFLYPL 179
Query: 866 LLLLHLFHLLFPDILPETPLLHLTSKIIFVTIFKLRHIIFLIFFPIIIFLTIILLLLCL 924
+ L F P L L L ++ + + F+ FF +++L+ +LL++CL
Sbjct: 180 *VTLTYFKHHIPFFLCSRVFLPLLKSSFMGSLMMMEFMEFIGFF--LLYLS-LLLMMCL 347
>BE807600 similar to GP|24461867|gb CTV.22 {Poncirus trifoliata}, partial
(4%)
Length = 414
Score = 36.6 bits (83), Expect = 0.082
Identities = 34/90 (37%), Positives = 44/90 (48%)
Frame = -2
Query: 854 ILLLLLHQLYLLLLLLHLFHLLFPDILPETPLLHLTSKIIFVTIFKLRHIIFLIFFPIII 913
ILLLLL L LLLLLL L LL ++LP+ +LHL + I
Sbjct: 407 ILLLLLLLLLLLLLLLLLLLLLLLELLPQKLMLHL--------------------LLVDI 288
Query: 914 FLTIILLLLCLYIHNLSLNPMLKQVNMSVG 943
L I+ LLL L +NL L +N+S+G
Sbjct: 287 LLRIL*LLLLLLGNNL-----LPSLNLSLG 213
Score = 33.5 bits (75), Expect = 0.69
Identities = 30/71 (42%), Positives = 41/71 (57%)
Frame = -2
Query: 823 LLLLIGNIFLIFPLYLILILLSLPVNLQSLMILLLLLHQLYLLLLLLHLFHLLFPDILPE 882
LLLL+ + L+ L L+L+LL L + Q LM+ LLL+ L +L LL L LL ++LP
Sbjct: 404 LLLLLLLLLLLLLLLLLLLLLLLELLPQKLMLHLLLVDILLRIL*LLLL--LLGNNLLPS 231
Query: 883 TPLLHLTSKII 893
L T K I
Sbjct: 230 LNLSLGTRKHI 198
Score = 32.0 bits (71), Expect = 2.0
Identities = 34/94 (36%), Positives = 48/94 (50%), Gaps = 4/94 (4%)
Frame = -2
Query: 808 LLFMKTISLTLILHPLLLLIGNIFLIFPLYLILILLSLPVNLQSLMILLLLLHQLYLLLL 867
+L + + L L+L LLLL+ + + P L+L LL + + L+ L +LLLLL L L
Sbjct: 407 ILLLLLLLLLLLLLLLLLLLLLLLELLPQKLMLHLLLVDILLRIL*LLLLLLGNNLLPSL 228
Query: 868 LLHL---FHLLFPDILPE-TPLLHLTSKIIFVTI 897
L L H+L IL P LT I+ V I
Sbjct: 227 NLSLGTRKHILHVGILANGAPHRILTRNILHVGI 126
>AW396581
Length = 401
Score = 36.6 bits (83), Expect = 0.082
Identities = 31/105 (29%), Positives = 49/105 (46%), Gaps = 3/105 (2%)
Frame = +3
Query: 808 LLFMKTISLTLILHPLLLLIGNIFLIFPLYLILILLSLPVNLQSLMILLLLLHQLYLLLL 867
LL + +I PL LL N ++F L+L + L L + L + L LL +++L
Sbjct: 51 LLLLLPFIFPIIFFPLDLLYINFVILFLLFLFFLFLLLFIVLPIIFFPLDLLSISFVILD 230
Query: 868 LLHLF---HLLFPDILPETPLLHLTSKIIFVTIFKLRHIIFLIFF 909
L LF + FP L + L +F+ F L I+ ++FF
Sbjct: 231 FLFLFLLLFVFFPLDLLYISFVILVFLFLFLLFFLLFSILPIMFF 365
Score = 34.7 bits (78), Expect = 0.31
Identities = 34/106 (32%), Positives = 51/106 (48%), Gaps = 12/106 (11%)
Frame = +3
Query: 831 FLIFPLYLILILLSLPVNLQSLMILLLLLHQLYLLLLLLHLFHL------LFPDILPETP 884
F IF L + +LL LP + L LL+ +++L LL LF L + P I
Sbjct: 21 FFIFVLLFLFLLLLLPFIFPIIFFPLDLLYINFVILFLLFLFFLFLLLFIVLPIIFFPLD 200
Query: 885 LLHLTSKII-FVTIFKLRHIIF-----LIFFPIIIFLTIILLLLCL 924
LL ++ I+ F+ +F L + F I F I++FL + LL L
Sbjct: 201 LLSISFVILDFLFLFLLLFVFFPLDLLYISFVILVFL-FLFLLFFL 335
Score = 31.6 bits (70), Expect = 2.6
Identities = 38/121 (31%), Positives = 57/121 (46%), Gaps = 13/121 (10%)
Frame = +3
Query: 335 CPCYNNQIWLFQHLLLHKLPPITLHLPAFPLQILLKVYLLLFLL*QVNLLFG*LIMV--- 391
C C+ + LF LLL L P + FPL +L +++LFLL + LF L +V
Sbjct: 12 CVCFFIFVLLFLFLLL--LLPFIFPIIFFPLDLLYINFVILFLL-FLFFLFLLLFIVLPI 182
Query: 392 ------LMNIYVVIL----LHLVPFIE*NLFMFPYPMVTLC*LILLVMSLSIPSFI*VMF 441
L++I VIL L L+ F+ L + V L L L ++ + S + +MF
Sbjct: 183 IFFPLDLLSISFVILDFLFLFLLLFVFFPLDLLYISFVILVFLFLFLLFFLLFSILPIMF 362
Query: 442 F 442
F
Sbjct: 363 F 365
>TC207028 similar to UP|Q9LW95 (Q9LW95) KED, partial (13%)
Length = 490
Score = 32.3 bits (72), Expect(2) = 0.099
Identities = 27/72 (37%), Positives = 39/72 (53%), Gaps = 3/72 (4%)
Frame = -2
Query: 808 LLFMKTISLTLILHPLLL---LIGNIFLIFPLYLILILLSLPVNLQSLMILLLLLHQLYL 864
+LF+ + + L L +LL LI +FLI + L ++ SL + I +LL +L
Sbjct: 354 ILFLTLLYILLFLFVILLFLLLILFLFLISFIILAFVIFSLFL*CVCFFIFVLL----FL 187
Query: 865 LLLLLHLFHLLF 876
LLLL LF LLF
Sbjct: 186 FLLLLFLFLLLF 151
Score = 22.7 bits (47), Expect(2) = 0.099
Identities = 11/30 (36%), Positives = 18/30 (59%)
Frame = -3
Query: 895 VTIFKLRHIIFLIFFPIIIFLTIILLLLCL 924
+TIF L F +++FL ++LLL+ L
Sbjct: 146 LTIFSLSL*CVCFFIFVLLFLFLLLLLILL 57
>TC205192
Length = 1543
Score = 36.2 bits (82), Expect = 0.11
Identities = 25/73 (34%), Positives = 37/73 (50%)
Frame = +3
Query: 506 FLLYLKVLVMLFLFPIVIRIVNMYLTMPYGTLDLVICLIKDFI*CLACILILLLIIIKML 565
F L+ K L +LF+F I + +N+YL Y D+ +CL *C A I+I + L
Sbjct: 849 FNLFNKKLQVLFMFSIHLLFINLYL---YFKSDVELCLYFRVD*CFAAIVICSF*LHLYL 1019
Query: 566 VIFAILPSTNIYL 578
V+ I S Y+
Sbjct: 1020VLLGICGSLMYYI 1058
>TC204168 UP|Q7XXT2 (Q7XXT2) Prepro beta-conglycinin alpha prime subunit,
complete
Length = 2055
Score = 36.2 bits (82), Expect = 0.11
Identities = 27/98 (27%), Positives = 46/98 (46%), Gaps = 14/98 (14%)
Frame = -3
Query: 839 ILILLSLPVNLQSLMILLLLLHQLYLLLLLLHLFH------LLFPDILPETPLLHLTSKI 892
+LIL+S +L+ L L L L+L+L+ F +LF +LP L L ++
Sbjct: 688 VLILMSSWFSLRLRTFTFLALFVLLLILVLVFFFFFTFLSLVLFLLVLPFVLFLFLLMRL 509
Query: 893 IFVTIF--------KLRHIIFLIFFPIIIFLTIILLLL 922
++ +F L + FL+ P + L ++L LL
Sbjct: 508 VWAWVFTFILFLFTSLSSVFFLLAMPFVFLLLLVLFLL 395
>BU550032 similar to GP|27901696|gb| gag-pol polyprotein {Vitis vinifera},
partial (21%)
Length = 698
Score = 35.8 bits (81), Expect = 0.14
Identities = 33/93 (35%), Positives = 44/93 (46%), Gaps = 3/93 (3%)
Frame = -3
Query: 1317 RNKSQYLDLPLKLNIGHWLQLLVNYNGFYTFSEIYMFHAPSCLFYTVIIKVQYTLLLTLF 1376
RNK LD +LNI L L N G S+ F YTVII+ +TL
Sbjct: 690 RNKLLLLDXVQRLNIDL*LWLHANLCGLNXXSKS*DFVKWCK*SYTVIIRQLFTLPQIQS 511
Query: 1377 FMSALNTWKLTVT*LEKSY---KVGLSSCFLFL 1406
FM L+T +L V E++Y ++ LSS L +
Sbjct: 510 FMRGLST*RLIVISFERNYCPRRLSLSSSILMI 412
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.356 0.163 0.531
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,325,940
Number of Sequences: 63676
Number of extensions: 1435314
Number of successful extensions: 28417
Number of sequences better than 10.0: 171
Number of HSP's better than 10.0 without gapping: 14721
Number of HSP's successfully gapped in prelim test: 1397
Number of HSP's that attempted gapping in prelim test: 9006
Number of HSP's gapped (non-prelim): 20525
length of query: 1439
length of database: 12,639,632
effective HSP length: 109
effective length of query: 1330
effective length of database: 5,698,948
effective search space: 7579600840
effective search space used: 7579600840
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 14 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (21.6 bits)
S2: 65 (29.6 bits)
Medicago: description of AC140721.3