TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC140721.10 + phase: 0 /pseudo
         (329 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC209081 similar to UP|Q8LD35 (Q8LD35) Nuclear matrix protein 1,...   295  5e-93
BE660090 homologue to GP|15077144|gb nuclear matrix protein 1 {L...   106  5e-33
TC232234 similar to UP|Q93XE2 (Q93XE2) Nuclear matrix protein 1,...    92  4e-19
BM525744                                                               30  1.1
CA938437                                                               28  7.4
CK768808                                                               28  7.4

>TC209081 similar to UP|Q8LD35 (Q8LD35) Nuclear matrix protein 1, partial
           (65%)
          Length = 876

 Score =  295 bits (756), Expect(2) = 5e-93
 Identities = 148/163 (90%), Positives = 157/163 (95%)
 Frame = +1

Query: 167 IP*VAELESKLTEQSKILLNLQQKVDDLASKHAYNPDEEYTEVESQLRAHLESFLETART 226
           +P V+ELE K +EQSKILLNLQQKVDDLASKHAYNPDEEYTEVESQLRAHLESFLETART
Sbjct: 169 LPDVSELELKFSEQSKILLNLQQKVDDLASKHAYNPDEEYTEVESQLRAHLESFLETART 348

Query: 227 FNMIYTKEIRPWTHMMEVPQLHGFGPAANRLLEAYKMLLKFLGNLQNLRDSHAALAFGSS 286
           FN+IYTKEIRPWTHMMEVPQLHGFGPAANRLLEAYKMLLKFLGNL+NLRDSHAALAFGSS
Sbjct: 349 FNLIYTKEIRPWTHMMEVPQLHGFGPAANRLLEAYKMLLKFLGNLRNLRDSHAALAFGSS 528

Query: 287 ETSGGPSSVSRIISECESEMTVINRDLGILSASIAREHGEKMS 329
           ETS GPSSV+RIISECES +TV+NRDLGILSASIARE GEKM+
Sbjct: 529 ETSDGPSSVTRIISECESALTVLNRDLGILSASIAREQGEKMN 657



 Score = 63.9 bits (154), Expect(2) = 5e-93
 Identities = 33/41 (80%), Positives = 35/41 (84%)
 Frame = +2

Query: 127 VLTSR*PRTYT**ILLQKNRHKYFLKNVNCFPQMFRFSPYI 167
           VLTSR*PRT  **  LQK++ KYFLKNVNCF QMFRFSPYI
Sbjct: 44  VLTSR*PRTSN**TPLQKSKLKYFLKNVNCFLQMFRFSPYI 166


>BE660090 homologue to GP|15077144|gb nuclear matrix protein 1 {Lycopersicon
           esculentum}, partial (33%)
          Length = 540

 Score =  106 bits (264), Expect(2) = 5e-33
 Identities = 52/59 (88%), Positives = 54/59 (91%)
 Frame = +3

Query: 3   SKQMEVIQKKLGMLNYPRANASAQSLLFAGMERYALFEWLFFRLLGDKSPFSQQNLQGD 61
           S+QME I+KKL  LNYPRANA AQSLLFAGMERYAL EWLFFRLLGDKSPFSQQNLQGD
Sbjct: 153 SRQMEEIRKKLADLNYPRANAPAQSLLFAGMERYALLEWLFFRLLGDKSPFSQQNLQGD 329



 Score = 52.8 bits (125), Expect(2) = 5e-33
 Identities = 28/44 (63%), Positives = 31/44 (69%)
 Frame = +2

Query: 53  FSQQNLQGDALDRDEETARIQYLAEIAKFLGITTTVDTDAIQTH 96
           FS +  +G  +       RIQYLAEIAKFLGITTTVDTDAIQ H
Sbjct: 305 FSTKPTRGWPMIVTRRLVRIQYLAEIAKFLGITTTVDTDAIQGH 436


>TC232234 similar to UP|Q93XE2 (Q93XE2) Nuclear matrix protein 1, partial
           (21%)
          Length = 580

 Score = 91.7 bits (226), Expect = 4e-19
 Identities = 56/99 (56%), Positives = 63/99 (63%), Gaps = 3/99 (3%)
 Frame = +3

Query: 1   MASKQMEVIQKKLGMLNYPRANASAQSLLFAGMERYALFEWLF---FRLLGDKSPFSQQN 57
           MAS+QME I+KKL  LNYPRANA AQSLLFAGME        F   FRL+    PF  + 
Sbjct: 261 MASRQMEEIRKKLADLNYPRANAPAQSLLFAGMETLCPSXXAFLSAFRLI--XXPFLHKT 434

Query: 58  LQGDALDRDEETARIQYLAEIAKFLGITTTVDTDAIQTH 96
            +G A+  DEET  I YL +IAKFLG TTTV T A   H
Sbjct: 435 XKGMAMIVDEETGXIPYLXKIAKFLGFTTTVXTXAXPGH 551


>BM525744 
          Length = 411

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 14/53 (26%), Positives = 25/53 (46%)
 Frame = +3

Query: 170 VAELESKLTEQSKILLNLQQKVDDLASKHAYNPDEEYTEVESQLRAHLESFLE 222
           V ++  K+ E   ILL L+   +D   +H YN  + Y   +   R  ++  L+
Sbjct: 9   VIDMTKKMVEPRNILLTLKDHNNDTTIRHIYNARQAYRSSQKGPRTEMQHLLK 167


>CA938437 
          Length = 422

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 10/36 (27%), Positives = 22/36 (60%)
 Frame = +2

Query: 33 MERYALFEWLFFRLLGDKSPFSQQNLQGDALDRDEE 68
          +E +  F+W+FFR+  + +  ++  +Q   + R+EE
Sbjct: 17 LEMFRRFQWVFFRVENEWNKITRSGVQLTEIPREEE 124


>CK768808 
          Length = 641

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +1

Query: 170 VAELESKLTEQSKILLNLQQKVDDLASKHAYNPDEEYT 207
           + +L++ +  + ++LLN+QQK+D L      N  E  T
Sbjct: 430 ICQLKNSVQLRDQVLLNMQQKLDSLCELVVNNSKEHST 543


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.332    0.143    0.430 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,755,253
Number of Sequences: 63676
Number of extensions: 141845
Number of successful extensions: 728
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 725
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 727
length of query: 329
length of database: 12,639,632
effective HSP length: 98
effective length of query: 231
effective length of database: 6,399,384
effective search space: 1478257704
effective search space used: 1478257704
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 59 (27.3 bits)