BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC140670.16 + phase: 0
(235 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BE058067 similar to PIR|D86350|D863 F8K7.13 protein - Arabidopsi... 53 1e-07
BE806132 similar to PIR|D86350|D863 F8K7.13 protein - Arabidopsi... 53 1e-07
TC216457 similar to GB|AAS58510.1|45357102|AY550299 MYB transcri... 39 0.002
CA953033 39 0.002
BM093706 37 0.008
AW132913 37 0.008
TC218241 similar to UP|ROL_HUMAN (P14866) Heterogeneous nuclear ... 35 0.023
TC217907 similar to UP|Q9C5X9 (Q9C5X9) P300/CBP acetyltransferas... 35 0.030
TC219533 homologue to UP|Q8L5P7 (Q8L5P7) LHY protein, partial (10%) 33 0.11
TC227400 similar to UP|Q6R0G3 (Q6R0G3) MYB transcription factor,... 33 0.15
BG237546 weakly similar to PIR|T52301|T5 GYMNOS/PICKLE protein [... 33 0.15
TC211840 homologue to UP|Q8LBF0 (Q8LBF0) Myb-related protein M4,... 32 0.19
TC233521 similar to UP|O04140 (O04140) Myb protein, partial (44%) 32 0.25
BE473449 homologue to GP|6979341|gb|A myb-like protein {Oryza sa... 32 0.25
TC219896 myb 32 0.33
AW756524 32 0.33
TC207351 similar to UP|Q9FZ13 (Q9FZ13) Tuber-specific and sucros... 31 0.56
TC207352 similar to UP|Q9FZ13 (Q9FZ13) Tuber-specific and sucros... 31 0.56
BQ297574 homologue to PIR|T02006|T020 transcription factor MYB4 ... 30 0.73
TC230726 30 0.73
>BE058067 similar to PIR|D86350|D863 F8K7.13 protein - Arabidopsis thaliana,
partial (11%)
Length = 423
Score = 53.1 bits (126), Expect = 1e-07
Identities = 21/40 (52%), Positives = 34/40 (84%)
Frame = +3
Query: 112 WSAEEEMLLLEALDMYGFGNWNDVADNIGTKSKSQCIDHY 151
W+ +E +LLLEA+++Y NWN++A+++GTKSK+QCI H+
Sbjct: 27 WTDQETLLLLEAMEIYN-ENWNEIAEHVGTKSKAQCILHF 143
>BE806132 similar to PIR|D86350|D863 F8K7.13 protein - Arabidopsis thaliana,
partial (11%)
Length = 406
Score = 52.8 bits (125), Expect = 1e-07
Identities = 21/40 (52%), Positives = 34/40 (84%)
Frame = +3
Query: 112 WSAEEEMLLLEALDMYGFGNWNDVADNIGTKSKSQCIDHY 151
W+ +E +LLLEA+++Y NWN++A+++GTKSK+QCI H+
Sbjct: 21 WTDQETLLLLEAVEVYN-ENWNEIAEHVGTKSKAQCILHF 137
>TC216457 similar to GB|AAS58510.1|45357102|AY550299 MYB transcription factor
{Arabidopsis thaliana;} , partial (27%)
Length = 2351
Score = 38.9 bits (89), Expect = 0.002
Identities = 25/68 (36%), Positives = 32/68 (46%)
Frame = +1
Query: 83 SVGVELTPHKSNHPYRVMDNLSFPLICPDWSAEEEMLLLEALDMYGFGNWNDVADNIGTK 142
SVG TP K PY + W+ EE LEAL +YG G W + ++IGTK
Sbjct: 409 SVGNNQTP-KVRKPYTITKQRE------KWTEEEHQKFLEALKLYGRG-WRQIEEHIGTK 564
Query: 143 SKSQCIDH 150
+ Q H
Sbjct: 565 NAVQIRSH 588
>CA953033
Length = 421
Score = 38.9 bits (89), Expect = 0.002
Identities = 25/68 (36%), Positives = 32/68 (46%)
Frame = +3
Query: 83 SVGVELTPHKSNHPYRVMDNLSFPLICPDWSAEEEMLLLEALDMYGFGNWNDVADNIGTK 142
SVG TP K PY + W+ EE LEAL +YG G W + ++IGTK
Sbjct: 147 SVGNNQTP-KVRKPYTITKQRE------KWTEEEHQKFLEALKLYGRG-WRQIEEHIGTK 302
Query: 143 SKSQCIDH 150
+ Q H
Sbjct: 303 NAVQIRSH 326
>BM093706
Length = 421
Score = 37.0 bits (84), Expect = 0.008
Identities = 17/39 (43%), Positives = 23/39 (58%)
Frame = +3
Query: 112 WSAEEEMLLLEALDMYGFGNWNDVADNIGTKSKSQCIDH 150
W+ EE LEAL +YG G W + ++IGTK+ Q H
Sbjct: 201 WTEEEHQKFLEALKLYGRG-WRQIEEHIGTKTAVQIRSH 314
>AW132913
Length = 400
Score = 37.0 bits (84), Expect = 0.008
Identities = 17/39 (43%), Positives = 23/39 (58%)
Frame = +3
Query: 112 WSAEEEMLLLEALDMYGFGNWNDVADNIGTKSKSQCIDH 150
W+ EE LEAL +YG G W + ++IGTK+ Q H
Sbjct: 234 WTEEEHQKFLEALKLYGRG-WRQIEEHIGTKNAVQIRSH 347
>TC218241 similar to UP|ROL_HUMAN (P14866) Heterogeneous nuclear
ribonucleoprotein L (hnRNP L) (P/OKcl.14), partial (4%)
Length = 1206
Score = 35.4 bits (80), Expect = 0.023
Identities = 38/154 (24%), Positives = 63/154 (40%), Gaps = 9/154 (5%)
Frame = +2
Query: 7 AASRSSPIAADDNRSKRKKVALNADNLETSSAAGMGITTDGKVSLYHCNYCNKDISGKIR 66
++S + P+ DD +K +A N SS+A + T C+ C +
Sbjct: 506 SSSLTKPLKWDDKETKSD----SASNSTESSSAPVKENTKRL-----CSGCKVVCT---- 646
Query: 67 IKCAVCQDFDL--CIECFSVGVELTPHKSNHPYRVMDNLS-------FPLICPDWSAEEE 117
I C C +DL C C+ G YRV N S DW+ +E
Sbjct: 647 IACFACDKYDLTLCARCYVRG----------NYRVGVNSSDFR*VEISEETKTDWNEKET 796
Query: 118 MLLLEALDMYGFGNWNDVADNIGTKSKSQCIDHY 151
LLEA+ Y +W V+ ++ +++ +C+ H+
Sbjct: 797 TNLLEAITHYS-DDWKRVSQHVPGRTEKECVAHF 895
>TC217907 similar to UP|Q9C5X9 (Q9C5X9) P300/CBP acetyltransferase-related
protein 2, partial (14%)
Length = 1911
Score = 35.0 bits (79), Expect = 0.030
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Frame = +1
Query: 54 CNYCNKDISGKIRIKCAVCQDFDLCIECFSV--GVELTPHK-SNHP 96
CN C DI +C VC ++D+C C+ G + PHK +NHP
Sbjct: 286 CNICRLDIETGQGWRCEVCPEYDVCNACYQKDRGAD-HPHKLTNHP 420
>TC219533 homologue to UP|Q8L5P7 (Q8L5P7) LHY protein, partial (10%)
Length = 641
Score = 33.1 bits (74), Expect = 0.11
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +3
Query: 112 WSAEEEMLLLEALDMYGFGNWNDVADNIGTKSKSQCIDH 150
W+ EE LEAL +YG W + ++IGTK+ Q H
Sbjct: 312 WTEEEHNRFLEALKLYGRA-WQRIEEHIGTKTAVQIRSH 425
>TC227400 similar to UP|Q6R0G3 (Q6R0G3) MYB transcription factor, partial
(30%)
Length = 1488
Score = 32.7 bits (73), Expect = 0.15
Identities = 15/39 (38%), Positives = 22/39 (55%)
Frame = +1
Query: 112 WSAEEEMLLLEALDMYGFGNWNDVADNIGTKSKSQCIDH 150
W+ EE LEAL +YG W + +++GTK+ Q H
Sbjct: 232 WTDEEHKKFLEALKLYGRA-WRRIEEHVGTKTAVQIRSH 345
>BG237546 weakly similar to PIR|T52301|T5 GYMNOS/PICKLE protein [imported] -
Arabidopsis thaliana, partial (7%)
Length = 437
Score = 32.7 bits (73), Expect = 0.15
Identities = 14/48 (29%), Positives = 23/48 (47%)
Frame = +1
Query: 112 WSAEEEMLLLEALDMYGFGNWNDVADNIGTKSKSQCIDHYNTVYVNSP 159
W E + +LL A+ +G+G W +AD+ K N ++N P
Sbjct: 268 WKEEHDYVLLRAVLKHGYGKWQAIADDKDLKI*EVICHELNLSFINLP 411
>TC211840 homologue to UP|Q8LBF0 (Q8LBF0) Myb-related protein M4, partial
(38%)
Length = 516
Score = 32.3 bits (72), Expect = 0.19
Identities = 10/29 (34%), Positives = 18/29 (61%)
Frame = +2
Query: 112 WSAEEEMLLLEALDMYGFGNWNDVADNIG 140
W+ EE+ L++ + +G+GNW + N G
Sbjct: 11 WTTEEDQKLIDYIQKHGYGNWRTLPKNAG 97
>TC233521 similar to UP|O04140 (O04140) Myb protein, partial (44%)
Length = 886
Score = 32.0 bits (71), Expect = 0.25
Identities = 11/29 (37%), Positives = 17/29 (57%)
Frame = +2
Query: 112 WSAEEEMLLLEALDMYGFGNWNDVADNIG 140
W+AEE+ +L+ + YG GNW + G
Sbjct: 68 WTAEEDQILVSHIQRYGHGNWRALPKQAG 154
>BE473449 homologue to GP|6979341|gb|A myb-like protein {Oryza sativa},
partial (24%)
Length = 415
Score = 32.0 bits (71), Expect = 0.25
Identities = 13/41 (31%), Positives = 21/41 (50%), Gaps = 2/41 (4%)
Frame = +2
Query: 109 CP--DWSAEEEMLLLEALDMYGFGNWNDVADNIGTKSKSQC 147
CP W E+ L + ++ YG NWN +A+ + +S C
Sbjct: 218 CPRGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSC 340
>TC219896 myb
Length = 842
Score = 31.6 bits (70), Expect = 0.33
Identities = 13/31 (41%), Positives = 18/31 (57%)
Frame = +3
Query: 112 WSAEEEMLLLEALDMYGFGNWNDVADNIGTK 142
WS EE+ L + + ++G G W VA N G K
Sbjct: 24 WSREEDETLSKYVSIHGEGKWQKVAQNAGLK 116
>AW756524
Length = 256
Score = 31.6 bits (70), Expect = 0.33
Identities = 14/46 (30%), Positives = 25/46 (53%), Gaps = 1/46 (2%)
Frame = +2
Query: 112 WSAEEEMLLLEALDMYGFGNWNDVADN-IGTKSKSQCIDHYNTVYV 156
W+ +E LLL L+ YG G+W ++ N + T + +Q H ++
Sbjct: 56 WTEDEHRLLLLGLEKYGKGDWRSISRNFVVT*TPTQVASHAQKYFI 193
>TC207351 similar to UP|Q9FZ13 (Q9FZ13) Tuber-specific and sucrose-responsive
element binding factor, partial (52%)
Length = 974
Score = 30.8 bits (68), Expect = 0.56
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = +3
Query: 112 WSAEEEMLLLEALDMYGFGNWNDVADNIGTKSKSQC 147
WSA+E+ +L ++ YG NW+ ++ I +S C
Sbjct: 267 WSAQEDRILTRLVEQYGPRNWSLISRYIKGRSGKSC 374
>TC207352 similar to UP|Q9FZ13 (Q9FZ13) Tuber-specific and sucrose-responsive
element binding factor, partial (58%)
Length = 811
Score = 30.8 bits (68), Expect = 0.56
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +1
Query: 112 WSAEEEMLLLEALDMYGFGNWNDVADNIGTKSKSQC 147
WSAEE+ +L ++ YG NW+ ++ I +S C
Sbjct: 142 WSAEEDRILTGLVERYGPRNWSLISRYIKGRSGKSC 249
>BQ297574 homologue to PIR|T02006|T020 transcription factor MYB4 homolog
T15B16.7 - Arabidopsis thaliana, partial (19%)
Length = 421
Score = 30.4 bits (67), Expect = 0.73
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +2
Query: 112 WSAEEEMLLLEALDMYGFGNWNDVADNIGT 141
WS EE+ LL + YG G W+ V GT
Sbjct: 182 WSPEEDEKLLRHITKYGHGCWSSVPKQAGT 271
>TC230726
Length = 554
Score = 30.4 bits (67), Expect = 0.73
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +2
Query: 150 HYNTVYVNSPCFPVPDLSHFS 170
H++T+ SP FP+PD HFS
Sbjct: 113 HFHTMSNKSPVFPIPDPQHFS 175
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.321 0.135 0.425
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,610,142
Number of Sequences: 63676
Number of extensions: 210976
Number of successful extensions: 1203
Number of sequences better than 10.0: 67
Number of HSP's better than 10.0 without gapping: 1203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1203
length of query: 235
length of database: 12,639,632
effective HSP length: 94
effective length of query: 141
effective length of database: 6,654,088
effective search space: 938226408
effective search space used: 938226408
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)
Medicago: description of AC140670.16