BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC140550.12 + phase: 0
(882 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC223310 similar to UP|Q75LD5 (Q75LD5) Expressed protein, partia... 117 3e-26
TC227804 110 3e-24
TC220421 weakly similar to UP|GP1_CHLRE (Q9FPQ6) Vegetative cell... 40 0.003
TC233861 weakly similar to UP|Q41192 (Q41192) NaPRP3, partial (21%) 39 0.010
TC228692 similar to UP|Q8S9A6 (Q8S9A6) Glucosyltransferase-3, pa... 38 0.022
TC222724 weakly similar to UP|Q6VBJ4 (Q6VBJ4) Epa5p, partial (5%) 37 0.029
AI959820 similar to GP|14335118|gb| At1g30200/F12P21_1 {Arabidop... 37 0.038
TC206923 similar to UP|Q8LAM5 (Q8LAM5) Protein disulfide isomera... 37 0.038
TC214189 homologue to UP|Q8L949 (Q8L949) Plastid protein, partia... 37 0.049
TC219909 weakly similar to UP|ENL2_ARATH (Q9T076) Early nodulin-... 37 0.049
TC209348 similar to UP|Q9LSD7 (Q9LSD7) Arabidopsis thaliana geno... 36 0.084
TC212227 similar to UP|Q940Y9 (Q940Y9) AT5g02940/F9G14_250, part... 35 0.11
TC220329 weakly similar to UP|Q9ZS47 (Q9ZS47) Arbuscular mycorrh... 35 0.11
TC206176 weakly similar to UP|Q8LPA7 (Q8LPA7) Cold shock protein... 35 0.11
TC228913 weakly similar to UP|Q8IP68 (Q8IP68) CG31813-PA, partia... 35 0.11
TC211029 similar to UP|Q96VI4 (Q96VI4) Protease 1, partial (3%) 33 0.13
TC234931 similar to UP|Q9SBM1 (Q9SBM1) Hydroxyproline-rich glyco... 35 0.14
TC220213 similar to UP|Q7XYV0 (Q7XYV0) P58IPK, partial (38%) 35 0.14
AW620463 35 0.14
AW101289 35 0.14
>TC223310 similar to UP|Q75LD5 (Q75LD5) Expressed protein, partial (10%)
Length = 438
Score = 117 bits (292), Expect = 3e-26
Identities = 59/87 (67%), Positives = 69/87 (78%)
Frame = +3
Query: 796 DKQINRVLEELFAEEGNEMCIKPAEFYLFDQEELCFYDIMIRGRTRKEIVIGYRLANQER 855
D+QIN VLEELFAEEGNEM I+ A+ YL + EEL FY+IM+R R R+EIVIGYRLAN ER
Sbjct: 3 DRQINDVLEELFAEEGNEMHIRKADLYLCEGEELNFYEIMLRARQRREIVIGYRLANAER 182
Query: 856 AIINPSEKSVPRKWSLDDVFVVLASGE 882
A+INP K+ RKWSL DVFVV+ E
Sbjct: 183 AVINPPVKTDRRKWSLKDVFVVITEKE 263
>TC227804
Length = 1344
Score = 110 bits (275), Expect = 3e-24
Identities = 108/415 (26%), Positives = 189/415 (45%), Gaps = 41/415 (9%)
Frame = +1
Query: 509 QIWEDILGFENAEFYIKRWPELDDLLFKDILISFPDAIPCGVKVAADGGKIVINPDDNYV 568
+I+ +L + F + P L+ L ++ I FP+A+ CG+ GKI +P+D +
Sbjct: 1 KIYRHLLNYRKNVFNLCSLPNLEGLTYRQIRHRFPEAVVCGL---YRSGKIYFHPNDGEI 171
Query: 569 LRDGDEVLVIA--EDDDTYAPGPLPEVRKGYFP--------------------RIRDPPK 606
L+ D+VL I D +T P + + ++G + R+ + K
Sbjct: 172 LQQTDKVLFIGSLRDTNTKKPEVILDGKEGMYEIHNEEILEKDVEHAIELSKVRLANIVK 351
Query: 607 YP---------------EKILFCGWRRDIDDMIMVLEAFLAPGSELWMFNEVPEKERERK 651
P E IL GWR + +MI + +L PGS L + ++ P +R K
Sbjct: 352 RPNRSGSKASDGNLGPKECILLLGWRPEAVEMIQEYDNYLGPGSVLEVLSDTPLDDRINK 531
Query: 652 LAAGELDVFG---LENIKLVHREGNAVIRRHLESLPLETFDSILILADESVEDSVAHSDS 708
+ ++ G L N+++ HR GN + L+ L +S L +E V S+A
Sbjct: 532 AS----NIHGHNKLRNVRVSHRIGNPMDYDTLKETILHIQNS---LKNEDVPMSIAVISD 690
Query: 709 RSLATLLLIRDIQSRRLPYRDTKSTSLRLSGFSHNSWIREMQQASDKSIIISEILDSRTR 768
R LL ++ RL + +L L+ N ++Q +++EI+DS+
Sbjct: 691 RD---WLLGDPSKADRL-----SAYALLLAENICNKLGVKVQN------LVAEIVDSKLG 828
Query: 769 NLVSVSRIS-DYVLSNELVSMALAMVAEDKQINRVLEELFAEEGNEMCIKPAEFYLFDQE 827
+S R S + + E++S+ A VAE+ ++N V ++L EG+E+ IK Y+ + E
Sbjct: 829 KQISRIRPSVTSIAAEEIMSLVTAQVAENSELNEVWKDLLDAEGDEIYIKDIGLYMKEGE 1008
Query: 828 ELCFYDIMIRGRTRKEIVIGYRLANQERAIINPSEKSVPRKWSLDDVFVVLASGE 882
F ++ R R+E+ IGY ++ +INP KS P + D +V++ E
Sbjct: 1009NPSFSELSERAYLRREVAIGY--VKNKKNVINPVAKSEPLSLEMTDSLIVISELE 1167
Score = 33.1 bits (74), Expect = 0.55
Identities = 42/199 (21%), Positives = 83/199 (41%), Gaps = 24/199 (12%)
Frame = +1
Query: 351 VLILGWSDKLGSLLKQLAIANKSVGGGVIVVLAEKEKEEMEMDIAKLEFD--FMGTSVIC 408
+L+LGW + ++++ N G V+ VL++ ++ + + V
Sbjct: 409 ILLLGWRPEAVEMIQEYD--NYLGPGSVLEVLSDTPLDDRINKASNIHGHNKLRNVRVSH 582
Query: 409 RSGSPL-----------ILADLKKVSVSKARAII-----VLAADENADQSDARALRVVLS 452
R G+P+ I LK V + A+I +L AD+ A AL +
Sbjct: 583 RIGNPMDYDTLKETILHIQNSLKNEDVPMSIAVISDRDWLLGDPSKADRLSAYALLLA-- 756
Query: 453 LAGVKEGLRGHVVVEMSDLDNEPLVKLVGGEL------IETVVAHDVIGRLMIQCALQPG 506
E + + V++ +L E + +G ++ + ++ A +++ + Q A
Sbjct: 757 -----ENICNKLGVKVQNLVAEIVDSKLGKQISRIRPSVTSIAAEEIMSLVTAQVAENSE 921
Query: 507 LAQIWEDILGFENAEFYIK 525
L ++W+D+L E E YIK
Sbjct: 922 LNEVWKDLLDAEGDEIYIK 978
>TC220421 weakly similar to UP|GP1_CHLRE (Q9FPQ6) Vegetative cell wall
protein gp1 precursor (Hydroxyproline-rich glycoprotein
1), partial (13%)
Length = 1409
Score = 40.4 bits (93), Expect = 0.003
Identities = 36/126 (28%), Positives = 48/126 (37%), Gaps = 6/126 (4%)
Frame = +3
Query: 11 LNVMNKPPLKKTKTLPSLNLRVSVTPPNPNDNNGIGGTSTTK-TDFSEQQWNYPSFLGIG 69
LN PP + P + S TPP+P+ + + T T S + PS
Sbjct: 198 LNPSTSPPHRTPAPSPPSTMPPSATPPSPSATSSPSASPTAPPTSPSPSPPSSPSPPSAP 377
Query: 70 STSRKRRQPPPPPSKPPVNLIPPHPRPLSVNDHN-----KTTSSLLPQPSSSSITKQQQQ 124
S S P PP + PP + P P P S N TS P S + T +
Sbjct: 378 SPSSTA--PSPPSASPPTSPSPSPPSPASTASANSPASGSPTSRTSPTSPSPTSTSKPPA 551
Query: 125 HSTSSP 130
S+SSP
Sbjct: 552 PSSSSP 569
>TC233861 weakly similar to UP|Q41192 (Q41192) NaPRP3, partial (21%)
Length = 438
Score = 38.9 bits (89), Expect = 0.010
Identities = 20/57 (35%), Positives = 30/57 (52%)
Frame = +2
Query: 57 EQQWNYPSFLGIGSTSRKRRQPPPPPSKPPVNLIPPHPRPLSVNDHNKTTSSLLPQP 113
++ WN+ S S+ RK +PP PPS PP PP P P S N+ + +++ P
Sbjct: 74 QRPWNWTSTSPSASS*RKPSRPPSPPSPPP----PPPPPPRSSNNPSSSSTMTTSTP 232
>TC228692 similar to UP|Q8S9A6 (Q8S9A6) Glucosyltransferase-3, partial (48%)
Length = 775
Score = 37.7 bits (86), Expect = 0.022
Identities = 27/79 (34%), Positives = 36/79 (45%), Gaps = 7/79 (8%)
Frame = +1
Query: 46 GGTSTTKTDFSEQQWNYPSFLGIGSTSRKRRQPPPPPSK--PPVNLIP-----PHPRPLS 98
GGT T T +++ SF + PPPPPS PP N P P P P +
Sbjct: 130 GGTR*THTKPPPFTFHHHSFPXXPPPXPRHXPPPPPPSPATPPPNTSPLSPPPPPPSPST 309
Query: 99 VNDHNKTTSSLLPQPSSSS 117
+ + ++ S LP PS SS
Sbjct: 310 ASLRSPSSPSSLPWPSPSS 366
>TC222724 weakly similar to UP|Q6VBJ4 (Q6VBJ4) Epa5p, partial (5%)
Length = 714
Score = 37.4 bits (85), Expect = 0.029
Identities = 31/108 (28%), Positives = 50/108 (45%), Gaps = 8/108 (7%)
Frame = +2
Query: 33 SVTPPNPNDNNGIGGTSTTKTDFSEQQWNYPSFLGIGSTSRKRRQPPPPPSKPPVNLIPP 92
S +P + + + S +++ S + PS S+S P P PS PP +L P
Sbjct: 113 SASPSSSSRGSSRASPSRSRSPPSSSAASSPSPPAPSSSS-----PSPTPSSPPSSLSPA 277
Query: 93 HPRPLSVNDHNKTTSSLLPQPSSSSITKQQQQH--------STSSPIF 132
RP + H+ T SS P S ++T+++ +H S SSPI+
Sbjct: 278 ASRPPTPPTHS-TASSSKRAPPSPNLTRRRHRHRRSPCSTTSRSSPIW 418
>AI959820 similar to GP|14335118|gb| At1g30200/F12P21_1 {Arabidopsis
thaliana}, partial (19%)
Length = 342
Score = 37.0 bits (84), Expect = 0.038
Identities = 30/101 (29%), Positives = 42/101 (40%), Gaps = 6/101 (5%)
Frame = +2
Query: 17 PPLKKTKTLPSLNLRVSVT------PPNPNDNNGIGGTSTTKTDFSEQQWNYPSFLGIGS 70
P +++KT S + S T PP P GTS+ + + PS
Sbjct: 56 PSSRRSKTSSSASTASSPTTTPLPPPPPPTSPAAPSGTSSASSSAES*NPSKPSV----- 220
Query: 71 TSRKRRQPPPPPSKPPVNLIPPHPRPLSVNDHNKTTSSLLP 111
+S PPPPPS+P L PP P P S ++ T + P
Sbjct: 221 SSSAPNAPPPPPSRP---LPPPPPPPPSPSEPTTTPTPASP 334
>TC206923 similar to UP|Q8LAM5 (Q8LAM5) Protein disulfide isomerase-like,
partial (53%)
Length = 1422
Score = 37.0 bits (84), Expect = 0.038
Identities = 21/69 (30%), Positives = 29/69 (41%)
Frame = +2
Query: 50 TTKTDFSEQQWNYPSFLGIGSTSRKRRQPPPPPSKPPVNLIPPHPRPLSVNDHNKTTSSL 109
+++T S + P SR+ PPPP S P + P P N TT +
Sbjct: 458 SSRTTASSWSSSTPPGAATARPSRRSTPPPPPSSSPTASFSPKSTPPSKTNWRTSTTFRV 637
Query: 110 LPQPSSSSI 118
P SSSS+
Sbjct: 638 SPPSSSSSM 664
Score = 36.2 bits (82), Expect = 0.065
Identities = 32/132 (24%), Positives = 49/132 (36%), Gaps = 22/132 (16%)
Frame = +2
Query: 8 SSNLNVMNKPPLKKTKT--LPSLNLRVSVTPPNPNDNNGI-------------------G 46
+S+ N M PPL+ T +P+ + R + T +
Sbjct: 263 ASSRNPMTPPPLRTTAIFQIPTGSTRTATTTATSATSQASTTRRRRRSRWMTRTSSF*RS 442
Query: 47 GTSTTKTDFSEQQWNYPSFLGIGSTSRKRRQ-PPPPPSKPPVNLIPPHPRPLSVNDHNKT 105
TS + + W+ + G + RR PPPPPS P P P S + +
Sbjct: 443 ATSLPSSRTTASSWSSSTPPGAATARPSRRSTPPPPPSSSPTASFSPKSTPPSKTNWRTS 622
Query: 106 TSSLLPQPSSSS 117
T+ + PSSSS
Sbjct: 623 TTFRVSPPSSSS 658
>TC214189 homologue to UP|Q8L949 (Q8L949) Plastid protein, partial (71%)
Length = 969
Score = 36.6 bits (83), Expect = 0.049
Identities = 19/56 (33%), Positives = 24/56 (41%)
Frame = +3
Query: 60 WNYPSFLGIGSTSRKRRQPPPPPSKPPVNLIPPHPRPLSVNDHNKTTSSLLPQPSS 115
W P L ++ PPPPP PP+ +P P +SSL P PSS
Sbjct: 51 WQEPFPLPARASQCASSPPPPPPPPPPLRSPLHYPNPRHSQSQRVDSSSLSPMPSS 218
>TC219909 weakly similar to UP|ENL2_ARATH (Q9T076) Early nodulin-like protein
2 precursor (Phytocyanin-like protein), partial (21%)
Length = 943
Score = 36.6 bits (83), Expect = 0.049
Identities = 37/151 (24%), Positives = 60/151 (39%), Gaps = 16/151 (10%)
Frame = +1
Query: 17 PPLKKTKTLPSLNLRV-----SVTPPNPNDNNGIGGTSTTKTDFSEQQWNYPSFL-GIGS 70
PP KT PS + +V+PP P+ + + S + P+ I
Sbjct: 235 PPFPKTSPSPSPSQSPKANPPTVSPPLPSPSPSVHSKSLSPASSPVPAVGTPAISPAISI 414
Query: 71 TSRKRRQPPPPPSKPPVNLIPPHPRPLSVNDHNKTTSSLLPQPS----------SSSITK 120
+ PPPS P + PP P P S + + SS P P+ SS+ T
Sbjct: 415 PTLAPETGTPPPSLGPSSSSPPSPGPSSSSPPSPGPSSSSPPPAGPTSPPSLAPSSNSTA 594
Query: 121 QQQQHSTSSPIFYLLVICCIILVPYSAYLQY 151
++S S +++ C+ +V +A L+Y
Sbjct: 595 PSPKNSGFSVAPSSVLMYCVTIVAGAALLRY 687
>TC209348 similar to UP|Q9LSD7 (Q9LSD7) Arabidopsis thaliana genomic DNA,
chromosome 3, P1 clone: MOJ10, partial (12%)
Length = 1405
Score = 35.8 bits (81), Expect = 0.084
Identities = 19/48 (39%), Positives = 25/48 (51%), Gaps = 3/48 (6%)
Frame = +2
Query: 77 QPPPPPSKPPVNLIPPHPRPLS---VNDHNKTTSSLLPQPSSSSITKQ 121
+PPPPPS P L PP P P+S V +T S+ S +T+Q
Sbjct: 614 EPPPPPSSSPPPLPPPPPPPMSQYPVPQFMQTAGSISSMAYSYGVTQQ 757
>TC212227 similar to UP|Q940Y9 (Q940Y9) AT5g02940/F9G14_250, partial (21%)
Length = 581
Score = 35.4 bits (80), Expect = 0.11
Identities = 22/100 (22%), Positives = 51/100 (51%), Gaps = 8/100 (8%)
Frame = +3
Query: 342 KSEVIERNHVLILGWSDKLGSLLKQL--------AIANKSVGGGVIVVLAEKEKEEMEMD 393
K +V+E +H++I G + L +LKQL + + I+++++ +++++
Sbjct: 252 KEQVLETDHIIICGMNSHLPFILKQLNKYQEFAVLLGTPTARRQRILLMSDLPRKQIDRV 431
Query: 394 IAKLEFDFMGTSVICRSGSPLILADLKKVSVSKARAIIVL 433
+ D V+ +S S + ++ + ++ARAII+L
Sbjct: 432 ADNIAKDLNHIDVLTKSCSLNMTKSFERAAANRARAIIIL 551
>TC220329 weakly similar to UP|Q9ZS47 (Q9ZS47) Arbuscular mycorrhiza protein,
partial (54%)
Length = 918
Score = 35.4 bits (80), Expect = 0.11
Identities = 33/124 (26%), Positives = 51/124 (40%), Gaps = 5/124 (4%)
Frame = +1
Query: 75 RRQPPPPPSKPPVNLIPPHPRPLSVNDHNKTTSSLLPQPSS-----SSITKQQQQHSTSS 129
R PPPPP+ PP +L P P P +++ + T+ S S K H +
Sbjct: 79 RSPPPPPPTPPPSSLPIPPPPPATLHFKSATSDQYHVAVDSKGFEDSLTVKANVLHPMAE 258
Query: 130 PIFYLLVICCIILVPYSAYLQYKLAKLKDMKLQLCGQIDFCSRNGKTSIQEEVDDDDNAD 189
P+ P S +QY + + +DM +Q+ CS N T + D+ N D
Sbjct: 259 PL-----AAPRNSQPISDAVQYTVPECRDMPMQM--PESTCSFN--TFPVQPTDNSRNTD 411
Query: 190 SRTI 193
T+
Sbjct: 412 GATM 423
>TC206176 weakly similar to UP|Q8LPA7 (Q8LPA7) Cold shock protein-1, partial
(77%)
Length = 883
Score = 35.4 bits (80), Expect = 0.11
Identities = 21/56 (37%), Positives = 27/56 (47%), Gaps = 3/56 (5%)
Frame = -1
Query: 78 PPPPPSKPPVNLIPPHPR---PLSVNDHNKTTSSLLPQPSSSSITKQQQQHSTSSP 130
PPPPP +PP L PP P P ++ TS+ +PS S +ST SP
Sbjct: 343 PPPPPPRPPP*LRPPSPPRLVPWTLAPSGPVTSTAFARPSDS----DSMANSTDSP 188
Score = 31.6 bits (70), Expect = 1.6
Identities = 11/19 (57%), Positives = 12/19 (62%)
Frame = -1
Query: 78 PPPPPSKPPVNLIPPHPRP 96
PPPPP PP +PP P P
Sbjct: 586 PPPPPPPPPPTYLPPPPPP 530
>TC228913 weakly similar to UP|Q8IP68 (Q8IP68) CG31813-PA, partial (19%)
Length = 692
Score = 35.4 bits (80), Expect = 0.11
Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Frame = +3
Query: 72 SRKRRQPPPPPSKPPVN-LIPPHPRPLSVNDHNKTTSSLLPQ 112
+R RRQPPPPP +PP + PHP + + + + LLP+
Sbjct: 12 ARLRRQPPPPPDEPPPQPSLRPHPARVRLPRPLRRRAPLLPR 137
Score = 32.0 bits (71), Expect = 1.2
Identities = 30/118 (25%), Positives = 45/118 (37%), Gaps = 12/118 (10%)
Frame = +2
Query: 18 PLKKTKTLPSLNLRVSVTPP-NPNDNNGIGGTSTTKTDFSEQQWNYPSFLGIGSTSRKRR 76
P K T PS +L S++ P +P TS+T + S P+ + +
Sbjct: 260 PSKSPSTWPSASLATSMSSPASPQPRVPSASTSSTTSAAS------PASASSVANTASVT 421
Query: 77 QPPPPPSKPPVNLIPPHPRPLSVNDHNKTTSS-----------LLPQPSSSSITKQQQ 123
P PPS P PP + + N T S+ P PSSSS ++ +
Sbjct: 422 TAPSPPSTPSTTTTPPPTARSTPSSSNPTLSTSPTATPKRTRVSSPTPSSSSTSRSSR 595
>TC211029 similar to UP|Q96VI4 (Q96VI4) Protease 1, partial (3%)
Length = 858
Score = 32.7 bits (73), Expect(2) = 0.13
Identities = 23/73 (31%), Positives = 33/73 (44%), Gaps = 3/73 (4%)
Frame = +1
Query: 61 NYPSFLGIGSTSRKRRQPPPPPSKPPV---NLIPPHPRPLSVNDHNKTTSSLLPQPSSSS 117
N+ S +TS +R P P + PP + PP+ + + N T SL P PSSSS
Sbjct: 295 NHGSSSMASTTSPQRTTNPLPLTLPPTPGSSSQPPNTTTSTSTNTNPTPPSLAPTPSSSS 474
Query: 118 ITKQQQQHSTSSP 130
+ S+P
Sbjct: 475 LPPTSSTPQFSTP 513
Score = 21.2 bits (43), Expect(2) = 0.13
Identities = 7/12 (58%), Positives = 8/12 (66%)
Frame = +2
Query: 34 VTPPNPNDNNGI 45
V PPNPN N +
Sbjct: 188 VPPPNPNPNQSL 223
>TC234931 similar to UP|Q9SBM1 (Q9SBM1) Hydroxyproline-rich glycoprotein
DZ-HRGP precursor, partial (9%)
Length = 485
Score = 35.0 bits (79), Expect = 0.14
Identities = 16/38 (42%), Positives = 20/38 (52%)
Frame = +3
Query: 78 PPPPPSKPPVNLIPPHPRPLSVNDHNKTTSSLLPQPSS 115
PPPPP PP++L PP P P T S +P P +
Sbjct: 273 PPPPPPPPPLSLSPPPPPP-----SKSMTLSFVPPPGA 371
Score = 30.4 bits (67), Expect = 3.5
Identities = 20/73 (27%), Positives = 29/73 (39%)
Frame = +3
Query: 14 MNKPPLKKTKTLPSLNLRVSVTPPNPNDNNGIGGTSTTKTDFSEQQWNYPSFLGIGSTSR 73
++ PPL P L +S PP P+ + + N P+ R
Sbjct: 252 VSSPPLPPPPPPPPPPLSLSPPPPPPSKSMTLSFVPPPGAPPPYPN-NMPNVRRPPHRRR 428
Query: 74 KRRQPPPPPSKPP 86
+ R+PPPPP PP
Sbjct: 429 RHRRPPPPPPPPP 467
>TC220213 similar to UP|Q7XYV0 (Q7XYV0) P58IPK, partial (38%)
Length = 981
Score = 35.0 bits (79), Expect = 0.14
Identities = 28/93 (30%), Positives = 34/93 (36%)
Frame = -2
Query: 55 FSEQQWNYPSFLGIGSTSRKRRQPPPPPSKPPVNLIPPHPRPLSVNDHNKTTSSLLPQPS 114
F Q+WN PPPPP KPP N PP P V + L P P
Sbjct: 581 FLNQKWN-------------SNPPPPPPGKPPPN-PPPGKPPSKVYVYPPPPKGLKPPPP 444
Query: 115 SSSITKQQQQHSTSSPIFYLLVICCIILVPYSA 147
S SSP+ YL + + Y+A
Sbjct: 443 PPI-----PASSRSSPLSYLTRLSSSLRTSYAA 360
>AW620463
Length = 398
Score = 35.0 bits (79), Expect = 0.14
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +3
Query: 70 STSRKRRQPPPPPSKPPVNLIPPHPRPLS-VNDHNKTTSSLLPQPSSSSIT 119
++S+ PPPP +PP L PP P P S + + +S P PSS +T
Sbjct: 192 ASSKSSTTAPPPPPQPPPPLPPPPPPPSSPAS*PSSPSSPSTPSPSSPPMT 344
>AW101289
Length = 412
Score = 35.0 bits (79), Expect = 0.14
Identities = 23/78 (29%), Positives = 30/78 (37%), Gaps = 6/78 (7%)
Frame = +3
Query: 48 TSTTKTDFSEQQWNYPSFLGIGSTSRKRRQPPPP------PSKPPVNLIPPHPRPLSVND 101
TS+ W SF S++ + PPPP PS PP N P P S +
Sbjct: 75 TSSPPASSKSSTWTPTSF----SSTTSQNSPPPPSETTTTPSSPPPNTATPTSAPTSPHP 242
Query: 102 HNKTTSSLLPQPSSSSIT 119
T S P P++ T
Sbjct: 243 SGPTPPSPSPSPAAPPAT 296
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.319 0.137 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,607,385
Number of Sequences: 63676
Number of extensions: 610574
Number of successful extensions: 12066
Number of sequences better than 10.0: 312
Number of HSP's better than 10.0 without gapping: 6851
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10015
length of query: 882
length of database: 12,639,632
effective HSP length: 106
effective length of query: 776
effective length of database: 5,889,976
effective search space: 4570621376
effective search space used: 4570621376
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)
Medicago: description of AC140550.12