BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC140549.14 - phase: 0 /pseudo
(771 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BE209422 similar to GP|4914334|gb|A F14N23.20 {Arabidopsis thali... 134 1e-31
TC226939 similar to UP|Q9ZQW9 (Q9ZQW9) U2 snRNP auxiliary factor... 108 7e-24
TC205873 similar to UP|Q9FMY5 (Q9FMY5) U2 snRNP auxiliary factor... 105 1e-22
TC220698 similar to GB|AAM67427.1|21689611|AY122894 At1g27650/T2... 104 1e-22
TC209858 97 6e-22
TC216024 similar to GB|AAM78036.1|21928015|AY125526 At2g01100/F2... 71 2e-12
TC219663 similar to GB|AAA36308.1|386949|HUMMHRD5 MHC HLA-RD pro... 68 2e-11
CD404472 66 5e-11
BM094945 65 1e-10
TC211767 similar to UP|Q7PKM6 (Q7PKM6) ENSANGP00000025341 (Fragm... 58 6e-10
TC216023 similar to GB|AAM78036.1|21928015|AY125526 At2g01100/F2... 62 1e-09
TC212455 weakly similar to UP|Q7QIA8 (Q7QIA8) AgCP3984 (Fragment... 54 2e-07
TC231117 similar to UP|Q7QH40 (Q7QH40) AgCP8016 (Fragment), part... 52 8e-07
TC222812 52 1e-06
TC228262 similar to UP|Q9MAL4 (Q9MAL4) F27F5.2, partial (4%) 51 2e-06
TC208252 weakly similar to UP|Q9HCC8 (Q9HCC8) Osteoblast differe... 50 3e-06
TC229920 weakly similar to UP|O64855 (O64855) Expressed protein ... 50 3e-06
TC230104 similar to UP|Q940U9 (Q940U9) AT5g17440/K3M16_10, parti... 50 4e-06
TC219166 similar to GB|AAA36308.1|386949|HUMMHRD5 MHC HLA-RD pro... 48 1e-05
TC234725 similar to UP|RFX1_HUMAN (P22670) MHC class II regulato... 47 2e-05
>BE209422 similar to GP|4914334|gb|A F14N23.20 {Arabidopsis thaliana},
partial (2%)
Length = 439
Score = 134 bits (338), Expect = 1e-31
Identities = 87/174 (50%), Positives = 103/174 (59%), Gaps = 13/174 (7%)
Frame = +1
Query: 27 KERLEEEARLNDPEEERKRILLEQQEAERIERDRIAFEEREKAW---IIKQQQQRDLEEE 83
+ER EEE RLN+PEE+R+ LLEQQEAER++RD I F EREKAW +I Q+QQ
Sbjct: 1 RERREEEERLNNPEEQRRMQLLEQQEAERMQRDMILFREREKAWMDTVITQKQQ------ 162
Query: 84 QQQLSQRDLEQHESELEEEEEEDVDDDDDGRPEIIWLGNEIIIQKK----------NPNP 133
QQQ Q++ E E E EEE G PEIIW GNEII +KK P P
Sbjct: 163 QQQQQQQEDEDDEYEYVEEE---------GPPEIIWQGNEIIFKKKQLRVRVTDRDKPKP 315
Query: 134 LLLLHNHNHHHHHHHHQEQHEHHDNRPTSNPFPPESPSQPLHNVAQQPPNFGTE 187
N + + H QE+ DN+PTSNP PPES + L NVAQQ PNFGTE
Sbjct: 316 -------NETNQNDHQQEE----DNKPTSNPLPPESLT--LENVAQQIPNFGTE 438
>TC226939 similar to UP|Q9ZQW9 (Q9ZQW9) U2 snRNP auxiliary factor, small
subunit, partial (74%)
Length = 1397
Score = 108 bits (271), Expect = 7e-24
Identities = 109/394 (27%), Positives = 166/394 (41%), Gaps = 4/394 (1%)
Frame = +1
Query: 184 FGTELDKAHCPFHLKTAACRFGDRCSRVHFYPDKSCTLLIKNMYNGPGLAWEQDEGLE*L 243
FGTE D+ +CPF+ K ACR GDRCSR+H P S T+L+ NMY P + G++
Sbjct: 178 FGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTILLSNMYQRPDMI---TPGVD-- 342
Query: 244 SGSSPIMA*GAMMQTNGRSLQRV*DCGSKA*KTWMH--LKFGEIVNFKVCKNGSFHLRGN 301
+ PI + R +Q D + + K+G+I + VC N + H+ GN
Sbjct: 343 AHGHPI---------DPRKIQ---DHFEEFYEDLFDELSKYGDIESLNVCDNLADHMVGN 486
Query: 302 VYVQYKLLDSALLAYNSVNGRYFAGKQVSCKFVNLTRWKVAICGEYMKSGYKTCSHGTAC 361
VYVQ++ + A A ++ GR++AG+ + F +T ++ A C +Y ++ TC+ G C
Sbjct: 487 VYVQFREEEHAANAVRNLTGRFYAGRPIIVDFSPVTDFREATCRQYEEN---TCNRGGYC 657
Query: 362 NFIHCFRNPGGDYEWADSDKPPPKFWVKEM-VALFGHSDNCEMSRVHGNFSALKHSSNIL 420
NF+H R +E+ LFG S HG S + S
Sbjct: 658 NFMHLKRIS------------------RELRRQLFGKS--------HGRHSRSRSRS--- 750
Query: 421 ETDSDREMGQLYGGRSSRRRQEDERKQRTLDEEWNTNYKDNHKRKYRNKTSDSDSDKEGL 480
R R +ER R +H RKY D D E
Sbjct: 751 ---------------PYRHRSHEERSHR------------SHSRKY----DDRDHHHESR 837
Query: 481 EEVDRKKYHEHTRKSSFNWNKDDNSRRHEEYSDVDRVTINRDNEKPHDRKGRNSQ-KSNR 539
R H R S ++ RRH +S V RD + +R+ R Q R
Sbjct: 838 SRRHRSTSPRHRRGRS--RSRSPGGRRH--HSPV------RDGSE--ERRARIEQWNRER 981
Query: 540 DSRDWIYEAGCDEDRDGDGRKHHISRRKGSRHQS 573
+ ++ Y+ +E +G+ KHH +++ QS
Sbjct: 982 EDQEPGYKVNAEEINNGNASKHHGHQQQEQEPQS 1083
Score = 33.1 bits (74), Expect = 0.47
Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 6/78 (7%)
Frame = +3
Query: 110 DDDGRPEIIWLGNEIIIQKKNPNPLLLLHNHNHHHHHHHHQEQHEH---HDNRPTSNPFP 166
D +G+ E+ L + +Q + P +L H H H+ QH HD+ P P
Sbjct: 183 DGEGQGELPVLLQDRRVQARRP---VLASPHEAEHKPHYSPLQHVPAP*HDHPRRRRPRP 353
Query: 167 PESPSQ---PLHNVAQQP 181
P PSQ PL V ++P
Sbjct: 354 PHRPSQNPGPLRGVLRRP 407
Score = 30.8 bits (68), Expect = 2.4
Identities = 30/135 (22%), Positives = 49/135 (36%)
Frame = +1
Query: 485 RKKYHEHTRKSSFNWNKDDNSRRHEEYSDVDRVTINRDNEKPHDRKGRNSQKSNRDSRDW 544
R + HE S + DD HE S R T P R+GR+
Sbjct: 757 RHRSHEERSHRSHSRKYDDRDHHHESRSRRHRST------SPRHRRGRS----------- 885
Query: 545 IYEAGCDEDRDGDGRKHHISRRKGSRHQSRDNSNVTDESESDKDRGHEEYSDVDWDTMSR 604
R GR+HH R GS + R + D++ G++ V+ + ++
Sbjct: 886 -------RSRSPGGRRHHSPVRDGS-EERRARIEQWNREREDQEPGYK----VNAEEINN 1029
Query: 605 ENEKQHGSNGRNSQK 619
N +H + + Q+
Sbjct: 1030GNASKHHGHQQQEQE 1074
>TC205873 similar to UP|Q9FMY5 (Q9FMY5) U2 snRNP auxiliary factor, small
subunit, partial (78%)
Length = 1300
Score = 105 bits (261), Expect = 1e-22
Identities = 65/216 (30%), Positives = 105/216 (48%), Gaps = 2/216 (0%)
Frame = +2
Query: 152 QHEHHDNRPTSNPFPPESPSQPLHNVAQQPPNFGTELDKAHCPFHLKTAACRFGDRCSRV 211
+ + +P NP P ++ L ++ FGTE D+ +CPF+ K ACR GDRCSR+
Sbjct: 11 EEKERKGKPKRNPNPNGEMAEHLASI------FGTEKDRVNCPFYFKIGACRHGDRCSRL 172
Query: 212 HFYPDKSCTLLIKNMYNGPGLAWEQDEGLE*LSGSSPIMA*GAMMQTNGRSLQRV*DCGS 271
H P S TL++ NMY P + + I+ Q +V D
Sbjct: 173 HTKPTISPTLVLSNMYQRPDM-------------NMNIITNPDQPQPQSLDPDKVQDHFD 313
Query: 272 KA*KTWMH--LKFGEIVNFKVCKNGSFHLRGNVYVQYKLLDSALLAYNSVNGRYFAGKQV 329
+ K+G I + +C N + H+ GNVYVQ++ D A A ++ GR+++G+ +
Sbjct: 314 DFYEDLFEELSKYGPIQSLNICDNLADHMVGNVYVQFREEDHAANALMNLTGRFYSGRPI 493
Query: 330 SCKFVNLTRWKVAICGEYMKSGYKTCSHGTACNFIH 365
F +T ++ A C +Y ++ C+ G CNF+H
Sbjct: 494 IVDFSPVTDFREATCRQYEEN---VCNRGGYCNFMH 592
Score = 33.5 bits (75), Expect = 0.36
Identities = 36/149 (24%), Positives = 60/149 (40%), Gaps = 3/149 (2%)
Frame = +2
Query: 558 GRKHHISRRKGSRHQSRDNSNVTDESESDKDRGHEEYSDVDWDTMSRENEKQHGSNGRNS 617
GR + R GSR +S ++R H E S + R+ ++ HG +GR
Sbjct: 632 GRNRRWNGRSGSRSRS-----------PPRNRNHGENSHSGRGSGRRDFDRSHGPHGRRP 778
Query: 618 QKWNRDSRYRIYEAGSDEDRHRK---RHHSSQRKGSRHRSRDNSNVADESESDKDRGHEK 674
+ +R RYR + S R R R S++R+ ++ +K++G
Sbjct: 779 R--SRSPRYRGKRSRSPVGRDRSPPIRESSAERRAK----------IEQWNREKEQG--- 913
Query: 675 YSDVDWDTMSRDNEKQHDSKGKNSQKRNG 703
DT + +N K D + S +NG
Sbjct: 914 ------DTGNMNNSKSSDDYQEQSVAQNG 982
>TC220698 similar to GB|AAM67427.1|21689611|AY122894 At1g27650/T22C5_2
{Arabidopsis thaliana;} , partial (70%)
Length = 995
Score = 104 bits (260), Expect = 1e-22
Identities = 63/182 (34%), Positives = 97/182 (52%)
Frame = +2
Query: 184 FGTELDKAHCPFHLKTAACRFGDRCSRVHFYPDKSCTLLIKNMYNGPGLAWEQDEGLE*L 243
FGTE D+ +CPF+ K ACR GDRCSR+H P S TLL+ NMY P +
Sbjct: 116 FGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPSISPTLLLSNMYQRPDMI---------T 268
Query: 244 SGSSPIMA*GAMMQTNGRSLQRV*DCGSKA*KTWMHLKFGEIVNFKVCKNGSFHLRGNVY 303
G P + R +Q+ + + T + KFGEI + VC N + H+ GNVY
Sbjct: 269 PGVDP-----QGQTLDPRKIQQHFEDFYEDIFTEL-AKFGEIESLNVCDNLADHMIGNVY 430
Query: 304 VQYKLLDSALLAYNSVNGRYFAGKQVSCKFVNLTRWKVAICGEYMKSGYKTCSHGTACNF 363
VQ++ D A A +++ GR++ + + F +T ++ A C ++ ++ +C+ G CNF
Sbjct: 431 VQFREEDQAAKALHALRGRFYNARPIIADFSPVTDFREATCRQFEEN---SCNRGGYCNF 601
Query: 364 IH 365
+H
Sbjct: 602 MH 607
>TC209858
Length = 1340
Score = 97.4 bits (241), Expect(2) = 6e-22
Identities = 53/103 (51%), Positives = 72/103 (69%), Gaps = 3/103 (2%)
Frame = +2
Query: 426 REMGQLYGGRSSRRRQEDERKQRTLDEEWNTNYKDNHKRKYRNKTSDSDSDKEGLEEVDR 485
REM +L S RR+QEDE KQRT D++WN N+ KRK R +T DSD+D+E LE+ +
Sbjct: 638 REMDRLNCSNSGRRKQEDE*KQRTPDKDWNANF----KRKSRGRTPDSDADREWLEKQEN 805
Query: 486 KKYH-EHTRKSSFNWNKDDNSRRHEEYSDV--DRVTINRDNEK 525
++ H E+T SSF+ N+DDNSR HEE SDV DR+T N + ++
Sbjct: 806 RETHCEYTMNSSFDRNRDDNSRSHEEGSDVDWDRMTENEETQE 934
Score = 42.4 bits (98), Expect(2) = 2e-10
Identities = 25/46 (54%), Positives = 32/46 (69%), Gaps = 3/46 (6%)
Frame = +3
Query: 729 KESRHQSSDSGYGIDESDKD---KGEMEAQHGYSRKSSRHKRSGLQ 771
+ R+QS D+ ESDKD +G+M+ QH SRKSSRH+RSGLQ
Sbjct: 960 RRQRYQSGDAS----ESDKDVLGRGKMKTQHD-SRKSSRHRRSGLQ 1082
Score = 42.0 bits (97), Expect(2) = 2e-10
Identities = 31/127 (24%), Positives = 50/127 (38%)
Frame = +2
Query: 564 SRRKGSRHQSRDNSNVTDESESDKDRGHEEYSDVDWDTMSRENEKQHGSNGRNSQKWNRD 623
SRR SR R N + + + + D + D DW+ + + + ++W
Sbjct: 620 SRRSRSREMDRLNCSNSGRRKQE-DE*KQRTPDKDWNANFKRKSRGRTPDSDADREW--- 787
Query: 624 SRYRIYEAGSDEDRHRKRHHSSQRKGSRHRSRDNSNVADESESDKDRGHEKYSDVDWDTM 683
++ +R+ H S R+RD D R HE+ SDVDWD M
Sbjct: 788 ---------LEKQENRETHCEYTMNSSFDRNRD----------DNSRSHEEGSDVDWDRM 910
Query: 684 SRDNEKQ 690
+ + E Q
Sbjct: 911 TENEETQ 931
Score = 40.8 bits (94), Expect(2) = 1e-05
Identities = 28/106 (26%), Positives = 42/106 (39%)
Frame = +2
Query: 504 NSRRHEEYSDVDRVTINRDNEKPHDRKGRNSQKSNRDSRDWIYEAGCDEDRDGDGRKHHI 563
NS R ++ + + T ++D RK R + R+W+ + + R+ H
Sbjct: 665 NSGRRKQEDE*KQRTPDKDWNANFKRKSRGRTPDSDADREWLEKQ--------ENRETHC 820
Query: 564 SRRKGSRHQSRDNSNVTDESESDKDRGHEEYSDVDWDTMSRENEKQ 609
S D + D R HEE SDVDWD M+ E Q
Sbjct: 821 EYTMNSSF---------DRNRDDNSRSHEEGSDVDWDRMTENEETQ 931
Score = 26.6 bits (57), Expect(2) = 1e-05
Identities = 10/13 (76%), Positives = 12/13 (91%)
Frame = +1
Query: 615 RNSQKWNRDSRYR 627
RNS+KWNRD+R R
Sbjct: 922 RNSRKWNRDNRDR 960
Score = 25.8 bits (55), Expect(2) = 6e-22
Identities = 11/16 (68%), Positives = 14/16 (86%)
Frame = +1
Query: 528 DRKGRNSQKSNRDSRD 543
DR+ RNS+K NRD+RD
Sbjct: 910 DRE*RNSRKWNRDNRD 957
>TC216024 similar to GB|AAM78036.1|21928015|AY125526 At2g01100/F23H14.7
{Arabidopsis thaliana;} , partial (14%)
Length = 1433
Score = 70.9 bits (172), Expect = 2e-12
Identities = 72/324 (22%), Positives = 129/324 (39%), Gaps = 5/324 (1%)
Frame = +2
Query: 444 ERKQRTLDEEWNTNYKDNHKRKYRNKTSDSDSDKEGLEEVDRKKYHEHTRKSSFNWNKDD 503
E+K E K +K SDSD+D + K+ H
Sbjct: 275 EQKLEAAAETKERKLKATKHKKRSGSDSDSDNDSDDESRKTSKRSH-------------- 412
Query: 504 NSRRHEEYSDVDRVTINRDNEKPHDRKGRNSQKSNRDSRDWIYEAGCDEDRDGDGRKHHI 563
R+H ++S D + EK RK + S D D +E+ +E+R + +
Sbjct: 413 --RKHRKHSHYDSGDHEKRKEKSSKRKTKKSSSETSDYDD--FESSSEEERRKKKQSKKL 580
Query: 564 SRRKGSRHQSRDNSNVTDESESDKDRGHE-----EYSDVDWDTMSRENEKQHGSNGRNSQ 618
R +GSR S D+ ++ DE S + R H+ ++S D+ T ++ + ++G++S+
Sbjct: 581 -RDRGSRSDSSDSDSIADEL-SKRKRHHKRQRPSKFSGSDYSTEEGDSLVRKRNHGKHSK 754
Query: 619 KWNRDSRYRIYEAGSDEDRHRKRHHSSQRKGSRHRSRDNSNVADESESDKDRGHEKYSDV 678
+ +R S + SD+ +K H RK +H R ++ S+SD H + S
Sbjct: 755 R-HRRSESSESDLSSDDAPRKKGH----RKHQKHHKRSHNVELRSSDSDYHHSHGQRS-- 913
Query: 679 DWDTMSRDNEKQHDSKGKNSQKRNGDSKYQIDEAGSDEDRHRKKHLSSQMKESRHQSSDS 738
S+ E+ + + K S + D ++ H+ +H + Q S
Sbjct: 914 ----RSKSLEENSEDESKRSMHKKSD-RHHHHHRHHHHHHHKHRHHLDDERNHMQQHSPK 1078
Query: 739 GYGIDESDKDKGEMEAQHGYSRKS 762
G + DK E + + G +S
Sbjct: 1079FNGKHDEKLDKTETDKKDGGHHES 1150
Score = 63.2 bits (152), Expect = 4e-10
Identities = 54/214 (25%), Positives = 91/214 (42%), Gaps = 12/214 (5%)
Frame = +2
Query: 567 KGSRHQSRDNSNVTDESESDKD---------RGHEEYSDVDWDTMSRENEKQHGSNGRNS 617
K ++H+ R S+ +++SD + R H ++S +D+ E K+ S +
Sbjct: 320 KATKHKKRSGSDSDSDNDSDDESRKTSKRSHRKHRKHSH--YDSGDHEKRKEKSSKRKTK 493
Query: 618 QKWNRDSRYRIYEAGSDEDRHRKRHHSSQR-KGSRHRSRDNSNVADESESDKDRGHEKYS 676
+ + S Y +E+ S+E+R +K+ R +GSR S D+ ++ADE K
Sbjct: 494 KSSSETSDYDDFESSSEEERRKKKQSKKLRDRGSRSDSSDSDSIADELSKRK-------- 649
Query: 677 DVDWDTMSRDNEKQHDSK--GKNSQKRNGDSKYQIDEAGSDEDRHRKKHLSSQMKESRHQ 734
R +++Q SK G + GDS + G RHR R +
Sbjct: 650 --------RHHKRQRPSKFSGSDYSTEEGDSLVRKRNHGKHSKRHR-----------RSE 772
Query: 735 SSDSGYGIDESDKDKGEMEAQHGYSRKSSRHKRS 768
SS+S D++ + KG + Q HKRS
Sbjct: 773 SSESDLSSDDAPRKKGHRKHQ-------KHHKRS 853
Score = 59.3 bits (142), Expect = 6e-09
Identities = 61/289 (21%), Positives = 104/289 (35%), Gaps = 27/289 (9%)
Frame = +2
Query: 413 LKHSSNILETDSDREMGQLYGGRSSRRRQEDERKQRTLDEEWNTNYKDNHKRKYRNKTSD 472
LK + + + SD + S + + RK R + +++ ++ + KT
Sbjct: 317 LKATKHKKRSGSDSDSDNDSDDESRKTSKRSHRKHRKHSHYDSGDHEKRKEKSSKRKTKK 496
Query: 473 SDSDKEGLEEVDRKKYHEHTRKSSFNWNKDDNSRRHEEYSDVDRVTINRDNEKPHDRKGR 532
S S+ ++ + E +K +D SR + SD D + K H ++ R
Sbjct: 497 SSSETSDYDDFESSSEEERRKKKQSKKLRDRGSR--SDSSDSDSIADELSKRKRHHKRQR 670
Query: 533 NSQKSNRDSRDWIYEAGCDEDRDGDGRKHHISRRKGSRHQSRDNSNVTDESESDKDR--G 590
S+ S D +GD + K S+ R S+ +D S D R G
Sbjct: 671 PSKFSGSDY----------STEEGDSLVRKRNHGKHSKRHRRSESSESDLSSDDAPRKKG 820
Query: 591 HEEYS-------DVDWDTMSRENEKQHGSNGRNS--QKWNRDSRYRIYEAGSDEDRHRKR 641
H ++ +V+ + + HG R+ ++ + D R SD H R
Sbjct: 821 HRKHQKHHKRSHNVELRSSDSDYHHSHGQRSRSKSLEENSEDESKRSMHKKSDRHHHHHR 1000
Query: 642 HHSSQRKGSRHRSRDNSN---------------VADESESD-KDRGHEK 674
HH RH D N D++E+D KD GH +
Sbjct: 1001HHHHHHHKHRHHLDDERNHMQQHSPKFNGKHDEKLDKTETDKKDGGHHE 1147
Score = 51.2 bits (121), Expect = 2e-06
Identities = 42/140 (30%), Positives = 66/140 (47%), Gaps = 3/140 (2%)
Frame = +2
Query: 619 KWNRDSRYRIYEAGSDEDRHRKRHHSSQRKGSRHRSRDNSNVADESESDKDRGHEKY-SD 677
KW + ++ A ++R K +R GS S ++S+ DES R H K+
Sbjct: 269 KWEQ----KLEAAAETKERKLKATKHKKRSGSDSDSDNDSD--DESRKTSKRSHRKHRKH 430
Query: 678 VDWDTMSRDNEKQHDSKGKNSQKRNGDSKYQIDEAGSDEDRHRKKHLSSQMKE--SRHQS 735
+D+ + K+ SK K + + S Y E+ S+E+R RKK S ++++ SR S
Sbjct: 431 SHYDSGDHEKRKEKSSKRKTKKSSSETSDYDDFESSSEEER-RKKKQSKKLRDRGSRSDS 607
Query: 736 SDSGYGIDESDKDKGEMEAQ 755
SDS DE K K + Q
Sbjct: 608 SDSDSIADELSKRKRHHKRQ 667
Score = 43.5 bits (101), Expect = 4e-04
Identities = 30/178 (16%), Positives = 73/178 (40%), Gaps = 24/178 (13%)
Frame = +2
Query: 6 KEKRKALKKLKRKERRKEIAEKERLEEEARLNDPEEERKR----------------ILLE 49
+ K+K KKL+ + R + ++ + + +E +R+R ++ +
Sbjct: 551 RRKKKQSKKLRDRGSRSDSSDSDSIADELSKRKRHHKRQRPSKFSGSDYSTEEGDSLVRK 730
Query: 50 QQEAERIERDR--------IAFEEREKAWIIKQQQQRDLEEEQQQLSQRDLEQHESELEE 101
+ + +R R ++ ++ + ++ Q+ +L D + H S +
Sbjct: 731 RNHGKHSKRHRRSESSESDLSSDDAPRKKGHRKHQKHHKRSHNVELRSSDSDYHHSHGQR 910
Query: 102 EEEEDVDDDDDGRPEIIWLGNEIIIQKKNPNPLLLLHNHNHHHHHHHHQEQHEHHDNR 159
+ ++++ + ++ + KK+ H+H+ HHHHHHH+ +H D R
Sbjct: 911 SRSKSLEENSEDE-------SKRSMHKKSDRH----HHHHRHHHHHHHKHRHHLDDER 1051
>TC219663 similar to GB|AAA36308.1|386949|HUMMHRD5 MHC HLA-RD protein {Homo
sapiens;} , partial (14%)
Length = 1176
Score = 67.8 bits (164), Expect = 2e-11
Identities = 60/243 (24%), Positives = 97/243 (39%), Gaps = 10/243 (4%)
Frame = +3
Query: 536 KSNRDSRDWIYEAGCDEDRDGDGRKHHISRRKGSRHQSRDNSNVTDESESDKDRGHEEYS 595
+S+RD R+ E G D+DR+ + + H S + RD + D D+DR +
Sbjct: 261 RSSRD-REISRERGRDKDRERERSREH------SHERVRDRDHREDRHHRDRDRNRDRDR 419
Query: 596 DVDWDTMSRENEKQHGSNGRNSQKWNRDSRYRIYEAGSDEDRHRKRHHSSQRKGSRHRSR 655
D RE ++ G R + D DR R R R+ RHR R
Sbjct: 420 D-------RERDRDRG---------------RDRDRTRDRDRERGRDRDRDREYDRHRER 533
Query: 656 DNSNVADESESDKDRGHEKYSDVDWDTM-SRDNEKQHDSKGKNSQKRNGDSKYQIDEAGS 714
D D D DRG + + D+D + S+ E+ HD + ++ + R+ ++ A
Sbjct: 534 DR----DYEVGDPDRGRSRDRESDYDRVESKHGERNHDYEPEDDRGRHNQYEHGRRHADP 701
Query: 715 DEDRHRKKHLS---------SQMKESRHQSSDSGYGIDESDKDKGEMEAQHGYSRKSSRH 765
D D R H + +Q ++ H + Y + + E E H R+ R
Sbjct: 702 DHDPERYDHYNHGDDHGDHYNQYRD--HDGMEDDYHAGRATSESHEKERSHDVDREYQRS 875
Query: 766 KRS 768
+RS
Sbjct: 876 ERS 884
Score = 58.2 bits (139), Expect = 1e-08
Identities = 64/270 (23%), Positives = 102/270 (37%), Gaps = 9/270 (3%)
Frame = +3
Query: 431 LYGGRSSRRRQEDERKQRTLDEEWNTNYKDNHKRKYRNKTSDSDSDKEGLEEVDRKKYHE 490
+ G RSSR R+ + R D D ++E R + H
Sbjct: 249 IVGLRSSRDREISRERGR-----------------------DKDRERE------RSREHS 341
Query: 491 HTRKSSFNWNKDDNSRRHEEYSDVDRVTINRDNEKPHDRKGRNSQKSNRDSRDWIYEAGC 550
H R +D + R + D DR NRD ++ +R R+ + +RD E G
Sbjct: 342 HERV------RDRDHREDRHHRDRDR---NRDRDRDRER-DRDRGRDRDRTRDRDRERGR 491
Query: 551 DEDRDGDGRKHHISRRKGSRHQSRDNSNVTDESESDKDRGHEEYSDVDWDTMSRENEKQH 610
D DRD R+ RH+ RD D D DRG + D+D + E +H
Sbjct: 492 DRDRD----------REYDRHRERDR----DYEVGDPDRGRSRDRESDYDRV----ESKH 617
Query: 611 GSNGRNSQKWNRDSRYRIYEAG-------SDEDRHRKRHHSSQRKGSRHRSRDNSNVADE 663
G + + + R+ YE G D +R+ +H ++ RD+ + D+
Sbjct: 618 GERNHDYEPEDDRGRHNQYEHGRRHADPDHDPERYDHYNHGDDHGDHYNQYRDHDGMEDD 797
Query: 664 SESDK--DRGHEKYSDVDWDTMSRDNEKQH 691
+ + HEK D D + +E+ H
Sbjct: 798 YHAGRATSESHEKERSHDVDREYQRSERSH 887
Score = 31.2 bits (69), Expect = 1.8
Identities = 34/169 (20%), Positives = 65/169 (38%), Gaps = 19/169 (11%)
Frame = +3
Query: 8 KRKALKKLKRKERRKEIAEKERLEEEARLNDPEEERKRILLEQQEAERIERDRIAFEERE 67
+ + K + +ER +E + + + + R + +R R ++ ER +RDR +R
Sbjct: 288 RERGRDKDRERERSREHSHERVRDRDHREDRHHRDRDRNRDRDRDRER-DRDRGRDRDRT 464
Query: 68 KAWIIKQQQQRDLEEEQQQLSQR-------------------DLEQHESELEEEEEEDVD 108
+ ++ + RD + E + +R D ++ ES+ E +
Sbjct: 465 RDRDRERGRDRDRDREYDRHRERDRDYEVGDPDRGRSRDRESDYDRVESKHGERNHDYEP 644
Query: 109 DDDDGRPEIIWLGNEIIIQKKNPNPLLLLHNHNHHHHHHHHQEQHEHHD 157
+DD GR G +P ++NH H H Q+ HD
Sbjct: 645 EDDRGRHNQYEHGRRHADPDHDPE---RYDHYNHGDDHGDHYNQYRDHD 782
>CD404472
Length = 528
Score = 66.2 bits (160), Expect = 5e-11
Identities = 45/102 (44%), Positives = 61/102 (59%), Gaps = 1/102 (0%)
Frame = +1
Query: 442 EDERKQRTLDEEWNTNYKDNHKRKYRNKTSDSDSDKEGLE-EVDRKKYHEHTRKSSFNWN 500
+DE K RT D++ N N+K K + R SDSDSD E LE E +R+++H +T
Sbjct: 250 QDETKHRTPDKDGNANFK--RKSRGRTPDSDSDSDWEWLEKEENRERHHVYTL------- 402
Query: 501 KDDNSRRHEEYSDVDRVTINRDNEKPHDRKGRNSQKSNRDSR 542
NSR HEE SDV+ +R NEK R+GRNS+K +RD +
Sbjct: 403 ---NSRSHEEDSDVE--WDSRVNEKQLGREGRNSRKWSRDEK 513
Score = 57.4 bits (137), Expect = 2e-08
Identities = 34/89 (38%), Positives = 44/89 (49%), Gaps = 20/89 (22%)
Frame = +1
Query: 557 DGRKHHISRRKGSRHQSRDNSNVTDESESDKD--------------------RGHEEYSD 596
D KH + G+ + R + T +S+SD D R HEE SD
Sbjct: 253 DETKHRTPDKDGNANFKRKSRGRTPDSDSDSDWEWLEKEENRERHHVYTLNSRSHEEDSD 432
Query: 597 VDWDTMSRENEKQHGSNGRNSQKWNRDSR 625
V+WD SR NEKQ G GRNS+KW+RD +
Sbjct: 433 VEWD--SRVNEKQLGREGRNSRKWSRDEK 513
Score = 46.2 bits (108), Expect = 5e-05
Identities = 32/92 (34%), Positives = 52/92 (55%), Gaps = 16/92 (17%)
Frame = +1
Query: 631 AGSDEDRHR---KRHHSSQRKGSRHRSRDNSNVAD----ESESDKDR---------GHEK 674
+ DE +HR K +++ ++ SR R+ D+ + +D E E +++R HE+
Sbjct: 244 SAQDETKHRTPDKDGNANFKRKSRGRTPDSDSDSDWEWLEKEENRERHHVYTLNSRSHEE 423
Query: 675 YSDVDWDTMSRDNEKQHDSKGKNSQKRNGDSK 706
SDV+WD SR NEKQ +G+NS+K + D K
Sbjct: 424 DSDVEWD--SRVNEKQLGREGRNSRKWSRDEK 513
>BM094945
Length = 416
Score = 65.1 bits (157), Expect = 1e-10
Identities = 28/49 (57%), Positives = 34/49 (69%)
Frame = +2
Query: 184 FGTELDKAHCPFHLKTAACRFGDRCSRVHFYPDKSCTLLIKNMYNGPGL 232
FGTE D+ +CPF+ K ACR GDRCSR+H P S TLL+ NMY P +
Sbjct: 206 FGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPSISPTLLLSNMYQRPDM 352
>TC211767 similar to UP|Q7PKM6 (Q7PKM6) ENSANGP00000025341 (Fragment),
partial (7%)
Length = 560
Score = 57.8 bits (138), Expect(2) = 6e-10
Identities = 37/89 (41%), Positives = 44/89 (48%), Gaps = 10/89 (11%)
Frame = +2
Query: 118 IWLGNEIIIQKKNPNPLLLLHNHNHHHHH---------HHHQEQHEHHDNRPT-SNPFPP 167
IW GNEII++K+ + + H H H DNRPT SNP PP
Sbjct: 281 IWQGNEIILKKEQFRVRFTNETYQNDHQPMSMYNATCIHLTDSMHHSQDNRPTTSNPLPP 460
Query: 168 ESPSQPLHNVAQQPPNFGTELDKAHCPFH 196
ES S NVAQQ P+FGTE + C FH
Sbjct: 461 ESESHTW-NVAQQIPHFGTE--RVACTFH 538
Score = 24.6 bits (52), Expect(2) = 6e-10
Identities = 12/32 (37%), Positives = 17/32 (52%)
Frame = +1
Query: 73 KQQQQRDLEEEQQQLSQRDLEQHESELEEEEE 104
K QQQ + + QQ + +Q + E EEE E
Sbjct: 184 KTQQQHQRDRKWQQEGTEEKKQQQQEEEEEYE 279
>TC216023 similar to GB|AAM78036.1|21928015|AY125526 At2g01100/F23H14.7
{Arabidopsis thaliana;} , partial (15%)
Length = 1437
Score = 62.0 bits (149), Expect = 1e-09
Identities = 60/217 (27%), Positives = 94/217 (42%), Gaps = 16/217 (7%)
Frame = +3
Query: 569 SRHQSRDNSNVTDESESDKDRGHEEYSDVDWDTMSRENEKQHGSNGRNSQKWNRDS---R 625
S + S D S T + K R H Y D + ++ K R ++KW+ +S
Sbjct: 351 SDYDSDDESRKTSKRSHRKHRKHSHYDSGDHEKRKEKSSK------RKTKKWSSESSDYS 512
Query: 626 YRIYEAGSDEDRHRKRHHSS--QRKGSRHRSRDNSNVADESESDKDRGHE-----KYSDV 678
E+ +E+R RK+ S + +GSR S + + ADE S + R H+ K+S
Sbjct: 513 SDDSESSFEEERRRKKKQSKKLRDRGSRSDSSNYDSTADEL-SKRKRQHKRQRPSKFSGS 689
Query: 679 DWDTMSRDNEKQHDSKGKNSQKRNGDSKYQIDEAGSDEDRHRKKHLSSQMKESRHQS--- 735
D+ T D+ Q + G +S KR+ S+ + SD+ H+K H R +
Sbjct: 690 DYSTDEGDSLVQKRNHGMHS-KRHRQSESSESDLSSDDAPHKKGHRKHHKHHKRSHNVEL 866
Query: 736 --SDSGY-GIDESDKDKGEMEAQHGYSRKSSRHKRSG 769
SDS Y + + K E S+K S K+SG
Sbjct: 867 RLSDSDYRSHGQRSRSKSLEENSEDESKKRSMDKKSG 977
Score = 48.5 bits (114), Expect = 1e-05
Identities = 39/147 (26%), Positives = 68/147 (45%), Gaps = 3/147 (2%)
Frame = +3
Query: 619 KWNRDSRYRIYEAGSDEDRHRKRHHSSQRKGSRHRSRDNSNVADESESDKDRGHEKY-SD 677
KW + ++ A ++R K ++R GS S +S+ DES R H K+
Sbjct: 258 KWEQ----KLEAAAEAKERKLKVAKHTKRSGSDSDSDYDSD--DESRKTSKRSHRKHRKH 419
Query: 678 VDWDTMSRDNEKQHDSKGKNSQKRNGDSKYQIDEAGS--DEDRHRKKHLSSQMKESRHQS 735
+D+ + K+ SK K + + S Y D++ S +E+R RKK S ++++ +S
Sbjct: 420 SHYDSGDHEKRKEKSSKRKTKKWSSESSDYSSDDSESSFEEERRRKKKQSKKLRDRGSRS 599
Query: 736 SDSGYGIDESDKDKGEMEAQHGYSRKS 762
S Y D + + + + QH R S
Sbjct: 600 DSSNY--DSTADELSKRKRQHKRQRPS 674
Score = 46.6 bits (109), Expect = 4e-05
Identities = 56/296 (18%), Positives = 118/296 (38%), Gaps = 23/296 (7%)
Frame = +3
Query: 420 LETDSDREMGQLYGGRSSRRRQEDERKQRTLDEEWNTNYKDNHKRKYRNKTSDSDSDKEG 479
LE ++ + +L + ++R D D+E K +H++ ++ DS ++
Sbjct: 273 LEAAAEAKERKLKVAKHTKRSGSDSDSDYDSDDESRKTSKRSHRKHRKHSHYDSGDHEKR 452
Query: 480 LEEVDRKKYHEHTRKSSFNWNKDDNSRRHEEYSDVDRVTINRDNEKPHDRKGRNSQKSNR 539
E+ ++K + + +SS +++ DD+ EE +R + ++K DR G S SN
Sbjct: 453 KEKSSKRKTKKWSSESS-DYSSDDSESSFEE----ERRRKKKQSKKLRDR-GSRSDSSNY 614
Query: 540 DSR-DWIYE-------------AGCDEDRD-GDGRKHHISRRKGSRHQSRDNSNVTDESE 584
DS D + + +G D D GD + +R H R + + ES+
Sbjct: 615 DSTADELSKRKRQHKRQRPSKFSGSDYSTDEGDSL---VQKRNHGMHSKRHRQSESSESD 785
Query: 585 SDKD--------RGHEEYSDVDWDTMSRENEKQHGSNGRNSQKWNRDSRYRIYEAGSDED 636
D R H ++ + R ++ + S+G+ S+ + + D
Sbjct: 786 LSSDDAPHKKGHRKHHKHHKRSHNVELRLSDSDYRSHGQRSRSKSLEENSEDESKKRSMD 965
Query: 637 RHRKRHHSSQRKGSRHRSRDNSNVADESESDKDRGHEKYSDVDWDTMSRDNEKQHD 692
+ RHH + HR + + D+ + + K++ + + + ++ D
Sbjct: 966 KKSGRHH--HHRHHHHRHHHHRHHLDDERNYMQQHSPKFNGKHGEELDKTETEKKD 1127
Score = 42.0 bits (97), Expect = 0.001
Identities = 34/169 (20%), Positives = 63/169 (37%), Gaps = 14/169 (8%)
Frame = +3
Query: 5 RKEKRKALKKLKRKERRKEIAEKERLEEEARLNDPEEERKRILLEQQEAERIERDRIAFE 64
R+ K+K KKL+ + R + + + +E + +R+R + +
Sbjct: 546 RRRKKKQSKKLRDRGSRSDSSNYDSTADELSKRKRQHKRQRPSKFSGSDYSTDEGDSLVQ 725
Query: 65 EREKAWIIKQQQQRDLEEEQQQLSQRDL--------------EQHESELEEEEEEDVDDD 110
+R K+ +Q E + LS D H EL + +
Sbjct: 726 KRNHGMHSKRHRQS--ESSESDLSSDDAPHKKGHRKHHKHHKRSHNVELRLSDSDYRSHG 899
Query: 111 DDGRPEIIWLGNEIIIQKKNPNPLLLLHNHNHHHHHHHHQEQHEHHDNR 159
R + + +E +K++ + H+H+ HHHH HH +H D R
Sbjct: 900 QRSRSKSLEENSEDESKKRSMDKKSGRHHHHRHHHHRHHHHRHHLDDER 1046
>TC212455 weakly similar to UP|Q7QIA8 (Q7QIA8) AgCP3984 (Fragment), partial
(11%)
Length = 944
Score = 54.3 bits (129), Expect = 2e-07
Identities = 66/284 (23%), Positives = 116/284 (40%), Gaps = 14/284 (4%)
Frame = +1
Query: 423 DSDREMGQLYGGRSSRRRQEDERKQRTLDEEWNTNYKDNHKRKYRNKTSDSDSDKEGLEE 482
D D E ++ G D+R+ E++T Y N + + R+++ D D D++ E
Sbjct: 145 DHDEERVRVRGREHGHGSVVDDRR------EYSTRYH-NREARDRDRSRDRDVDRDLHRE 303
Query: 483 VDRKKYHEHTRKSSFNWNKDDNSRRHEEYSDVDRVTINRDNEKPHDRKGRNSQKSNRDSR 542
KK E +R W R E + R +D + + G Q+ RD R
Sbjct: 304 ---KKQEETSRGKEIEWEHKRGKER-ERSRERYRRDAEKDRSREREEDGDRRQEKERD-R 468
Query: 543 DWIYEAGCDEDRDGDGRKHHISRRKGSRHQSRDNS---NVTDESESDKDRGHEEYSDVDW 599
W + + DR RR+ R +SRD + + E+++D + E D +
Sbjct: 469 SW--DTVFERDR----------RREKERDRSRDRTIGGKRDRDPENERDDKNRERRDDRY 612
Query: 600 DTMSRENEKQHGSNGRNSQKWNRDSRYRIYEAGSDE-DRHRK--RHHSSQRKGSRHRSRD 656
R+ +NG++ R+ +E G+D DR+RK RH ++ R R+ D
Sbjct: 613 GHKDRDT-----ANGKD--------RHLRHEDGNDNGDRYRKHSRHEENEYHWERKRNSD 753
Query: 657 N--------SNVADESESDKDRGHEKYSDVDWDTMSRDNEKQHD 692
N + A+ ES + D++ DT+ +++ D
Sbjct: 754 NPVKVYNSMGSTAEVDESKLTSSEVEPDDLEEDTLQLPEQEEED 885
>TC231117 similar to UP|Q7QH40 (Q7QH40) AgCP8016 (Fragment), partial (6%)
Length = 805
Score = 52.4 bits (124), Expect = 8e-07
Identities = 21/51 (41%), Positives = 27/51 (52%)
Frame = +2
Query: 121 GNEIIIQKKNPNPLLLLHNHNHHHHHHHHQEQHEHHDNRPTSNPFPPESPS 171
GN P+P H H+HHHHHHHH H HH + ++ FP SP+
Sbjct: 170 GNGSPSPASQPHP----HPHHHHHHHHHHHHHHHHHSHHHHAHVFPETSPA 310
Score = 51.6 bits (122), Expect = 1e-06
Identities = 22/56 (39%), Positives = 30/56 (53%)
Frame = +2
Query: 130 NPNPLLLLHNHNHHHHHHHHQEQHEHHDNRPTSNPFPPESPSQPLHNVAQQPPNFG 185
+P+P H+H+HHHHHHHH H H P ++P P +P+ P NFG
Sbjct: 203 HPHPHHHHHHHHHHHHHHHHHSHHHHAHVFPETSPAPAPTPT-PTTGEDSTSHNFG 367
>TC222812
Length = 630
Score = 52.0 bits (123), Expect = 1e-06
Identities = 42/179 (23%), Positives = 78/179 (43%)
Frame = +2
Query: 559 RKHHISRRKGSRHQSRDNSNVTDESESDKDRGHEEYSDVDWDTMSRENEKQHGSNGRNSQ 618
+KH S + RH+ + + + + S + H+ S D SR + ++ + + Q
Sbjct: 5 KKHRSSHQSQDRHKHKRKHSSSKDKYSSRGTKHDCSSSDDEHHRSRHHRHKYDGSSDDEQ 184
Query: 619 KWNRDSRYRIYEAGSDEDRHRKRHHSSQRKGSRHRSRDNSNVADESESDKDRGHEKYSDV 678
R Y+ SDE +HH S+R RHR D+S SD + H +S+
Sbjct: 185 HHRSRHRRHKYDGSSDE-----KHHPSKR---RHR--------DDSLSDHEHRHSHHSNK 316
Query: 679 DWDTMSRDNEKQHDSKGKNSQKRNGDSKYQIDEAGSDEDRHRKKHLSSQMKESRHQSSD 737
D+ S D+E +H S+ + R+ + E G + K +S ++ + ++S+
Sbjct: 317 DYS--SSDDEHRHRSRNVRLKSRSRAERETELEEGEIILKSEKSVVSGEVGRASREASE 487
Score = 46.2 bits (108), Expect = 5e-05
Identities = 39/128 (30%), Positives = 58/128 (44%), Gaps = 6/128 (4%)
Frame = +2
Query: 552 EDRDGDGRKHHISRRK-GSRHQSRDNSNVTDESESDKDRGHEEYSDVDWDTMSRENEKQH 610
+DR RKH S+ K SR D S+ DE + H+ D + R ++H
Sbjct: 32 QDRHKHKRKHSSSKDKYSSRGTKHDCSSSDDEHHRSRHHRHKYDGSSDDEQHHRSRHRRH 211
Query: 611 GSNGRNSQKWNRDSRYRIYEAGSDEDRHRKRHHSSQRKGS-----RHRSRDNSNVADESE 665
+G + +K + R ++ SD + HR HHS++ S RHRSR NV +S
Sbjct: 212 KYDGSSDEKHHPSKRRHRDDSLSDHE-HRHSHHSNKDYSSSDDEHRHRSR---NVRLKSR 379
Query: 666 SDKDRGHE 673
S +R E
Sbjct: 380 SRAERETE 403
Score = 45.8 bits (107), Expect = 7e-05
Identities = 28/130 (21%), Positives = 55/130 (41%), Gaps = 2/130 (1%)
Frame = +2
Query: 639 RKRHHSSQRKGSRHRSRDNSNVADESESDKDRGHEKYSDVDWDTMSRDNEKQHDSKGKNS 698
RK+H SS + RH+ + + + + S + H+ S D SR + ++D +
Sbjct: 2 RKKHRSSHQSQDRHKHKRKHSSSKDKYSSRGTKHDCSSSDDEHHRSRHHRHKYDGSSDDE 181
Query: 699 QKRNGDSKYQIDEAGSDEDRH--RKKHLSSQMKESRHQSSDSGYGIDESDKDKGEMEAQH 756
Q + + SDE H +++H + + H+ S S+KD + +H
Sbjct: 182 QHHRSRHRRHKYDGSSDEKHHPSKRRHRDDSLSDHEHRHS------HHSNKDYSSSDDEH 343
Query: 757 GYSRKSSRHK 766
+ ++ R K
Sbjct: 344 RHRSRNVRLK 373
>TC228262 similar to UP|Q9MAL4 (Q9MAL4) F27F5.2, partial (4%)
Length = 657
Score = 51.2 bits (121), Expect = 2e-06
Identities = 34/138 (24%), Positives = 59/138 (42%)
Frame = +3
Query: 627 RIYEAGSDEDRHRKRHHSSQRKGSRHRSRDNSNVADESESDKDRGHEKYSDVDWDTMSRD 686
RI ++DR R+ + + K + ++ + E +KD+ E+ + D+ D
Sbjct: 9 RIRHEAKEKDRKREEEKAKKEKEREEKRKEKEKKEKDREREKDKSKERNKKDETDS---D 179
Query: 687 NEKQHDSKGKNSQKRNGDSKYQIDEAGSDEDRHRKKHLSSQMKESRHQSSDSGYGIDESD 746
N+ DS G +K+ K E +HRK RHQSS ++ +
Sbjct: 180 NQDMADSHGYKEEKKKEKDK---------ERKHRK----------RHQSSIDDVDSEKEE 302
Query: 747 KDKGEMEAQHGYSRKSSR 764
K++ + +HG RK SR
Sbjct: 303 KEESKKSRRHGSERKKSR 356
Score = 48.1 bits (113), Expect = 1e-05
Identities = 36/155 (23%), Positives = 71/155 (45%), Gaps = 6/155 (3%)
Frame = +3
Query: 437 SRRRQEDERKQRTLDEEWNTNYKDNHKRKYRNKTSDSDSDKEGLEEVDRKKYHEHTRKSS 496
+++ +E E K++ +++ ++ K K RNK ++DSD + + D Y E +K
Sbjct: 60 AKKEKEREEKRKEKEKKEKDREREKDKSKERNKKDETDSDNQDM--ADSHGYKEEKKK-- 227
Query: 497 FNWNKDDNSRRHEE--YSDVDRVTINRDNEKPHDRKGRNSQKSNRDSRDWIYEAGCDEDR 554
+ D R+H + S +D V ++ EK +K R + SR + + D
Sbjct: 228 ----EKDKERKHRKRHQSSIDDVDSEKE-EKEESKKSRRHGSERKKSRK--HANSPESDN 386
Query: 555 DGDGRKHHISRRKGSR----HQSRDNSNVTDESES 585
+ R+H GSR H+ ++ + D++E+
Sbjct: 387 ENRHRRHKRDHWDGSRKTGGHEELEDGELGDDAEN 491
Score = 42.4 bits (98), Expect = 8e-04
Identities = 29/169 (17%), Positives = 67/169 (39%), Gaps = 3/169 (1%)
Frame = +3
Query: 552 EDRDGDGRKHHISRRKGSRHQSRDNSNVTDESESDKDRGHEEYSDVDWDTMSRENEKQHG 611
+++D + + K + ++ + E +KD+ E + D+ +++ HG
Sbjct: 27 KEKDRKREEEKAKKEKEREEKRKEKEKKEKDREREKDKSKERNKKDETDSDNQDMADSHG 206
Query: 612 SNGRNSQKWNRDSRYR-IYEAGSDEDRHRKRHHSSQRKGSRHRS--RDNSNVADESESDK 668
++ +++ ++R +++ D+ K +K RH S + + A+ ESD
Sbjct: 207 YKEEKKKEKDKERKHRKRHQSSIDDVDSEKEEKEESKKSRRHGSERKKSRKHANSPESDN 386
Query: 669 DRGHEKYSDVDWDTMSRDNEKQHDSKGKNSQKRNGDSKYQIDEAGSDED 717
+ H ++ WD S+K G + + E G D +
Sbjct: 387 ENRHRRHKRDHWD---------------GSRKTGGHEELEDGELGDDAE 488
Score = 38.5 bits (88), Expect = 0.011
Identities = 25/101 (24%), Positives = 56/101 (54%), Gaps = 1/101 (0%)
Frame = +3
Query: 5 RKEKRKALKKLKRKERRKEIAEKERLEEEARLNDPEEERKRILLEQQEAERIE-RDRIAF 63
+ KR+ K K KER ++ EKE+ E++ R + ++ ++R ++ +++ + D +
Sbjct: 33 KDRKREEEKAKKEKEREEKRKEKEKKEKD-REREKDKSKERNKKDETDSDNQDMADSHGY 209
Query: 64 EEREKAWIIKQQQQRDLEEEQQQLSQRDLEQHESELEEEEE 104
+E +K +++D E + ++ Q ++ +SE EE+EE
Sbjct: 210 KEEKK-------KEKDKERKHRKRHQSSIDDVDSEKEEKEE 311
Score = 35.4 bits (80), Expect = 0.096
Identities = 36/144 (25%), Positives = 64/144 (44%), Gaps = 15/144 (10%)
Frame = +3
Query: 21 RKEIAEKERL-EEEARLNDPEEERKRILLEQQEAERIERDRIAFEEREKAWIIKQQQQRD 79
R E EK+R EEE + E E KR +E E+ E+DR EREK ++ ++ +
Sbjct: 15 RHEAKEKDRKREEEKAKKEKEREEKR-----KEKEKKEKDR----EREKDKSKERNKKDE 167
Query: 80 LEEEQQQLSQRDLEQHESELEEEEE-----------EDVDDDDDGRPEIIWL---GNEII 125
+ + Q ++ + E + E+++E +DVD + + + E G+E
Sbjct: 168 TDSDNQDMADSHGYKEEKKKEKDKERKHRKRHQSSIDDVDSEKEEKEESKKSRRHGSERK 347
Query: 126 IQKKNPNPLLLLHNHNHHHHHHHH 149
+K+ N + + H H H
Sbjct: 348 KSRKHANSPESDNENRHRRHKRDH 419
Score = 31.2 bits (69), Expect = 1.8
Identities = 28/101 (27%), Positives = 45/101 (43%), Gaps = 14/101 (13%)
Frame = +3
Query: 398 SDNCEMSRVHGNFSALK------------HSSNILETDSDREMGQLYGGRSSRRRQEDER 445
SDN +M+ HG K H S+I + DS++E + + SRR + +
Sbjct: 174 SDNQDMADSHGYKEEKKKEKDKERKHRKRHQSSIDDVDSEKEEKE--ESKKSRRHGSERK 347
Query: 446 KQRTLDEEWNTNYKDNHKRKYRNKTSDSDSDKE--GLEEVD 484
K R + N+ DN R R+K D ++ G EE++
Sbjct: 348 KSR---KHANSPESDNENRHRRHKRDHWDGSRKTGGHEELE 461
>TC208252 weakly similar to UP|Q9HCC8 (Q9HCC8) Osteoblast differentiation
promoting factor (AESP1935), partial (4%)
Length = 635
Score = 50.4 bits (119), Expect = 3e-06
Identities = 39/135 (28%), Positives = 60/135 (43%), Gaps = 7/135 (5%)
Frame = +3
Query: 573 SRDNSNVTDESESDKDRGHEEYSDVDWD----TMSRENEKQHGSNGRNSQKWNRDSRYRI 628
S+DN + ++E S K E+Y + D T R+ S+K +R R++
Sbjct: 33 SQDNDSSSEEERSQKRSNREKYDESRKDKTPVTRGRDYSSSSSLEEERSRKRSRHQRHKR 212
Query: 629 YEAG--SDEDRHRKRHHSSQRKGSRH-RSRDNSNVADESESDKDRGHEKYSDVDWDTMSR 685
++AG S D R+ HSS+ KG R SR+ S S+ K R HE S S
Sbjct: 213 HDAGSHSSSDDDRRDRHSSRSKGRRKGSSREKSRSEKHSKRHKHRKHE--SPNRSSRYSN 386
Query: 686 DNEKQHDSKGKNSQK 700
+ + H K K ++
Sbjct: 387 EKDSSHSRKEKRRRE 431
Score = 40.8 bits (94), Expect = 0.002
Identities = 36/132 (27%), Positives = 56/132 (42%), Gaps = 7/132 (5%)
Frame = +3
Query: 644 SSQRKGSRHRSRDNSNVADESESDKDRGHEKYSDVDWD----TMSRDNEKQHDSKGKNSQ 699
S K S+DN + ++E S K EKY + D T RD + + S+
Sbjct: 3 SGNNKTKGTTSQDNDSSSEEERSQKRSNREKYDESRKDKTPVTRGRDYSSSSSLEEERSR 182
Query: 700 KRNGDSKYQIDEAG---SDEDRHRKKHLSSQMKESRHQSSDSGYGIDESDKDKGEMEAQH 756
KR+ +++ +AG S +D R +H SS+ K R SS +K + E ++
Sbjct: 183 KRSRHQRHKRHDAGSHSSSDDDRRDRH-SSRSKGRRKGSS--------REKSRSEKHSKR 335
Query: 757 GYSRKSSRHKRS 768
RK RS
Sbjct: 336 HKHRKHESPNRS 371
>TC229920 weakly similar to UP|O64855 (O64855) Expressed protein
(At2g44200/F6E13.34), partial (19%)
Length = 1372
Score = 50.4 bits (119), Expect = 3e-06
Identities = 51/221 (23%), Positives = 92/221 (41%), Gaps = 22/221 (9%)
Frame = +3
Query: 444 ERKQRTLDEEWNTNYKDNHKRKYRNKTSDSDSD-------KEGLEEVDRKKYHEHTRKSS 496
E K++ +E ++ + K K++ K SDS+ D K G E+ DRK +H+ S
Sbjct: 3 ENKEKAHKKEKRKKHRSS-KSKHK-KLSDSEDDTTERRKRKTGNEDSDRK-HHKAQSDSE 173
Query: 497 FNWNKDDNSRRHEEYSDVDRVTINRDNEKPHDRKGR-----------NSQKSNRDSRDWI 545
+ ++ + RR + D + N + R G+ N KS R +
Sbjct: 174 YQSSEGEMRRRKDRIED-QKYRERSPNHQQRQRNGKDYKEDAGDRNYNRSKSERSVQKGQ 350
Query: 546 YEAGCDEDRDGDGRKHHIS----RRKGSRHQSRDNSNVTDESESDKDRGHEEYSDVDWDT 601
++G + RK+H R + HQ R + + ++ +D+ H E S
Sbjct: 351 LDSGYESSEGEKRRKNHYEDKKYRERSPNHQQRQRNGRDYKEDTGEDKKHRERS------ 512
Query: 602 MSRENEKQHGSNGRNSQKWNRDSRYRIYEAGSDEDRHRKRH 642
N +Q NGR+ ++ + + Y S E +HR+R+
Sbjct: 513 ---PNHQQRQRNGRDYKEGTGEDKK--YRERSPEHQHRQRN 620
Score = 36.2 bits (82), Expect = 0.056
Identities = 35/149 (23%), Positives = 57/149 (37%), Gaps = 18/149 (12%)
Frame = +3
Query: 636 DRHRKRHHSSQRKGSRHRSRDNSNVADESESDKDRGHEKYSDVDWDTMSRDNEKQ-HDSK 694
+ K H +RK +HRS + H+K SD + DT R K ++
Sbjct: 3 ENKEKAHKKEKRK--KHRSSKSK-------------HKKLSDSEDDTTERRKRKTGNEDS 137
Query: 695 GKNSQKRNGDSKYQIDEAGSDEDRHRKKHLSSQM---------------KESRHQSSDSG 739
+ K DS+YQ E E R RK + Q K+ + + D
Sbjct: 138 DRKHHKAQSDSEYQSSEG---EMRRRKDRIEDQKYRERSPNHQQRQRNGKDYKEDAGDRN 308
Query: 740 YGIDESDK--DKGEMEAQHGYSRKSSRHK 766
Y +S++ KG++++ + S R K
Sbjct: 309 YNRSKSERSVQKGQLDSGYESSEGEKRRK 395
Score = 30.4 bits (67), Expect = 3.1
Identities = 18/84 (21%), Positives = 37/84 (43%)
Frame = +3
Query: 425 DREMGQLYGGRSSRRRQEDERKQRTLDEEWNTNYKDNHKRKYRNKTSDSDSDKEGLEEVD 484
D++ + R+R + K+ T +++ + NH+++ RN + E + +
Sbjct: 408 DKKYRERSPNHQQRQRNGRDYKEDTGEDKKHRERSPNHQQRQRNGRDYKEGTGEDKKYRE 587
Query: 485 RKKYHEHTRKSSFNWNKDDNSRRH 508
R H+H ++ N D RRH
Sbjct: 588 RSPEHQHRQR-----NSRDYQRRH 644
>TC230104 similar to UP|Q940U9 (Q940U9) AT5g17440/K3M16_10, partial (24%)
Length = 763
Score = 50.1 bits (118), Expect = 4e-06
Identities = 38/132 (28%), Positives = 55/132 (40%)
Frame = +3
Query: 423 DSDREMGQLYGGRSSRRRQEDERKQRTLDEEWNTNYKDNHKRKYRNKTSDSDSDKEGLEE 482
DSDR + +GG+ + K L EE N + K + R+K D D+E +
Sbjct: 102 DSDRRLADHFGGKLXXGYMQIREKLAELQEERNKSRKTDRLDDRRSKERSRDRDRESSRD 281
Query: 483 VDRKKYHEHTRKSSFNWNKDDNSRRHEEYSDVDRVTINRDNEKPHDRKGRNSQKSNRDSR 542
+ E R + D SR H+ + D DR +RD ++ DR +S R SR
Sbjct: 282 RELGDSRERGR------DHDRRSRDHDRHYDRDR-GYDRDRDRDSDRTRSYDSRSRRRSR 440
Query: 543 DWIYEAGCDEDR 554
E D DR
Sbjct: 441 SRSRERSRDYDR 476
Score = 38.5 bits (88), Expect = 0.011
Identities = 30/118 (25%), Positives = 46/118 (38%)
Frame = +3
Query: 604 RENEKQHGSNGRNSQKWNRDSRYRIYEAGSDEDRHRKRHHSSQRKGSRHRSRDNSNVADE 663
RE + S+K +R R E D DR R R R D + +
Sbjct: 165 REKLAELQEERNKSRKTDRLDDRRSKERSRDRDRESSRDRELGDSRERGRDHDRRSRDHD 344
Query: 664 SESDKDRGHEKYSDVDWDTMSRDNEKQHDSKGKNSQKRNGDSKYQIDEAGSDEDRHRK 721
D+DRG+++ D D D + +DS+ + S+ + E D DRHR+
Sbjct: 345 RHYDRDRGYDRDRDRD-----SDRTRSYDSRSRRR------SRSRSRERSRDYDRHRR 485
Score = 34.7 bits (78), Expect = 0.16
Identities = 32/108 (29%), Positives = 46/108 (41%), Gaps = 1/108 (0%)
Frame = +3
Query: 534 SQKSNRDSRDWIYEAGCDEDRDGD-GRKHHISRRKGSRHQSRDNSNVTDESESDKDRGHE 592
S+K++R E D DR+ R+ SR +G H R + + D+DRG++
Sbjct: 204 SRKTDRLDDRRSKERSRDRDRESSRDRELGDSRERGRDHDRRSRDH---DRHYDRDRGYD 374
Query: 593 EYSDVDWDTMSRENEKQHGSNGRNSQKWNRDSRYRIYEAGSDEDRHRK 640
D D D + + S R R SR R E D DRHR+
Sbjct: 375 RDRDRDSD-----RTRSYDSRSR------RRSRSRSRERSRDYDRHRR 485
Score = 34.3 bits (77), Expect = 0.21
Identities = 23/89 (25%), Positives = 34/89 (37%)
Frame = +3
Query: 423 DSDREMGQLYGGRSSRRRQEDERKQRTLDEEWNTNYKDNHKRKYRNKTSDSDSDKEGLEE 482
D DRE SSR R+ + ++R D + + D H + R D D D +
Sbjct: 255 DRDRE--------SSRDRELGDSRERGRDHDRRSRDHDRHYDRDRGYDRDRDRDSDRTRS 410
Query: 483 VDRKKYHEHTRKSSFNWNKDDNSRRHEEY 511
D + +S D RRH+ Y
Sbjct: 411 YDSRSRRRSRSRSRERSRDYDRHRRHDRY 497
>TC219166 similar to GB|AAA36308.1|386949|HUMMHRD5 MHC HLA-RD protein {Homo
sapiens;} , partial (12%)
Length = 774
Score = 48.1 bits (113), Expect = 1e-05
Identities = 29/115 (25%), Positives = 46/115 (39%)
Frame = +3
Query: 619 KWNRDSRYRIYEAGSDEDRHRKRHHSSQRKGSRHRSRDNSNVADESESDKDRGHEKYSDV 678
K D + E +D DR R+R+ +R R R R S D+DRG + +
Sbjct: 207 KSKADRKIEAIERRADRDRDRERYRDRERDRDRDRDRTKSR-------DRDRGRDSDKER 365
Query: 679 DWDTMSRDNEKQHDSKGKNSQKRNGDSKYQIDEAGSDEDRHRKKHLSSQMKESRH 733
+ + R K D + + K +G S+ + D D H + S + RH
Sbjct: 366 EREEAERGKLKDRDHRSRERAKDSGHSEKSKRHSSHDRDSHGSSYSSREKDRHRH 530
Score = 41.2 bits (95), Expect = 0.002
Identities = 38/141 (26%), Positives = 55/141 (38%), Gaps = 1/141 (0%)
Frame = +3
Query: 536 KSNRDSRDWIYEAGCDEDRDGDGRKHHISRRKGSRHQSRDNSNVTDESES-DKDRGHEEY 594
KS D + E D DRD R+ R + RD D ++S D+DRG +
Sbjct: 207 KSKADRKIEAIERRADRDRD----------RERYRDRERDRDRDRDRTKSRDRDRGRDS- 353
Query: 595 SDVDWDTMSRENEKQHGSNGRNSQKWNRDSRYRIYEAGSDEDRHRKRHHSSQRKGSRHRS 654
+E E++ G+ + +R SR R ++G E R H GS + S
Sbjct: 354 --------DKEREREEAERGKLKDRDHR-SRERAKDSGHSEKSKRHSSHDRDSHGSSYSS 506
Query: 655 RDNSNVADESESDKDRGHEKY 675
R E D+ R H Y
Sbjct: 507 R---------EKDRHRHH*HY 542
Score = 33.9 bits (76), Expect = 0.28
Identities = 34/162 (20%), Positives = 64/162 (38%), Gaps = 9/162 (5%)
Frame = +3
Query: 439 RRQEDERKQRTLDEEWNTN----YKDNHKRKYRNKTSDSDSDKEGLEEVDRKKYHEHTRK 494
+R +DE K + E K + K + + +D D D+E + +R + + R
Sbjct: 141 KRSDDESKGMITEGEARDEPILKSKADRKIEAIERRADRDRDRERYRDRERDRDRDRDRT 320
Query: 495 SSFNWNKDDNSRRHEEYSDVDRVTINRDNEKPHDRK--GRNSQKSNRDSRDWIYEAGCDE 552
S + ++ +S + E + +R + + + +R +S+KS R S
Sbjct: 321 KSRDRDRGRDSDKEREREEAERGKLKDRDHRSRERAKDSGHSEKSKRHS---------SH 473
Query: 553 DRDGDGRKHHISRRKGSRHQ---SRDNSNVTDESESDKDRGH 591
DRD G + + RH D + T +S+S H
Sbjct: 474 DRDSHGSSYSSREKDRHRHH*HYLEDITRCTRQSQSTDQALH 599
>TC234725 similar to UP|RFX1_HUMAN (P22670) MHC class II regulatory factor
RFX1 (RFX) (Enhancer factor C) (EF-C), partial (3%)
Length = 407
Score = 47.4 bits (111), Expect = 2e-05
Identities = 15/26 (57%), Positives = 19/26 (72%)
Frame = +2
Query: 139 NHNHHHHHHHHQEQHEHHDNRPTSNP 164
+H+HHHHHHHHQ H HH ++ T P
Sbjct: 284 HHHHHHHHHHHQHHHHHHHHQRTKVP 361
Score = 43.9 bits (102), Expect = 3e-04
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = +2
Query: 138 HNHNHHHHHHHHQEQHEHHDNR 159
H+H+HHHHHHH H HH R
Sbjct: 284 HHHHHHHHHHHQHHHHHHHHQR 349
Score = 43.1 bits (100), Expect = 5e-04
Identities = 17/37 (45%), Positives = 20/37 (53%), Gaps = 3/37 (8%)
Frame = +2
Query: 133 PLLLLH---NHNHHHHHHHHQEQHEHHDNRPTSNPFP 166
PL L+ N +HHHHHHHH QH HH + P
Sbjct: 251 PLTLISDYSNPHHHHHHHHHHHQHHHHHHHHQRTKVP 361
Score = 37.4 bits (85), Expect = 0.025
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +2
Query: 132 NPLLLLHNHNHHHHHHHHQEQHE 154
NP H+H+HHH HHHH H+
Sbjct: 278 NPHHHHHHHHHHHQHHHHHHHHQ 346
Score = 35.8 bits (81), Expect = 0.073
Identities = 13/29 (44%), Positives = 17/29 (57%)
Frame = +2
Query: 124 IIIQKKNPNPLLLLHNHNHHHHHHHHQEQ 152
+I NP+ H+H+H HHHHHH Q
Sbjct: 260 LISDYSNPHHHHHHHHHHHQHHHHHHHHQ 346
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.314 0.131 0.399
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,672,172
Number of Sequences: 63676
Number of extensions: 724699
Number of successful extensions: 19684
Number of sequences better than 10.0: 800
Number of HSP's better than 10.0 without gapping: 8010
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13503
length of query: 771
length of database: 12,639,632
effective HSP length: 105
effective length of query: 666
effective length of database: 5,953,652
effective search space: 3965132232
effective search space used: 3965132232
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 63 (28.9 bits)
Medicago: description of AC140549.14