BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC140549.10 - phase: 0
(184 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC216317 UP|Q43462 (Q43462) Rab7p protein, complete 276 5e-75
TC216318 homologue to UP|Q43462 (Q43462) Rab7p protein, complete 275 9e-75
TC225644 UP|Q40203 (Q40203) RAB1C, complete 250 2e-67
TC206346 homologue to UP|Q08154 (Q08154) GTP-binding protein, co... 240 3e-64
TC227973 UP|Q39845 (Q39845) Small GTP-binding protein, complete 240 3e-64
TC221792 UP|Q39861 (Q39861) GTP binding protein, complete 222 7e-59
TC203376 homologue to UP|Q41023 (Q41023) Small GTP-binding prote... 167 3e-42
TC215026 homologue to UP|Q40219 (Q40219) RAB8E, partial (92%) 166 4e-42
TC203292 homologue to UP|Q8W3J4 (Q8W3J4) Ras-related protein RAB... 165 1e-41
BE190743 similar to PIR|S39565|S39 GTP-binding protein rab1 - so... 140 3e-34
TC215024 homologue to GB|BAB08351.1|9757904|AB015475 Rab-type sm... 139 4e-34
TC205442 UP|Q40208 (Q40208) RAB2A, complete 134 2e-32
TC206349 UP|P92963 (P92963) Rab2-like protein (GTP-binding RAB2A... 134 2e-32
TC218982 homologue to UP|Q38922 (Q38922) ATGB2 (GTP-binding prot... 130 4e-31
TC208849 UP|Q08154 (Q08154) GTP-binding protein, partial (53%) 130 5e-31
TC207438 homologue to UP|Q08145 (Q08145) GTP-binding protein, pa... 129 6e-31
TC206875 UP|Q39844 (Q39844) Small GTP-binding protein (Fragment)... 129 1e-30
TC216386 homologue to UP|RB1C_ARATH (O04486) Ras-related protein... 127 2e-30
TC206925 homologue to UP|Q39844 (Q39844) Small GTP-binding prote... 127 2e-30
TC229079 homologue to UP|Q40200 (Q40200) RAB11J, complete 124 3e-29
>TC216317 UP|Q43462 (Q43462) Rab7p protein, complete
Length = 1090
Score = 276 bits (705), Expect = 5e-75
Identities = 149/197 (75%), Positives = 160/197 (80%), Gaps = 18/197 (9%)
Frame = +3
Query: 6 DYLFKLLIIGDSSVGKSCLLLRFADDSYDDTYISTIGVDF--------AKPPSCRL---- 53
DYLFKLL+IGDSSVGKSCLLLRFADDSY D+YISTIGVDF K ++
Sbjct: 51 DYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELEGKTVKLQIWDTA 230
Query: 54 ------TITSSYYRGAHGIIIVYDVTDIESFNNVKQWLHEIDRYANHSVSKLLVGNKCDL 107
TITSSYYRGAHGIIIVYDVT++ESFNNVKQWL+EIDRYAN +V KLLVGNK DL
Sbjct: 231 GQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKQWLNEIDRYANDTVCKLLVGNKSDL 410
Query: 108 TDNKLVHTHTAKAFADELGIPFLETSAKDSINVEQAFLTMAAEIKNKMGSQPTGSKSAAE 167
DNK+V + TAKAFADELGIPFLETSAKDSINVEQAFLTMAAEIK KMGSQ T KS AE
Sbjct: 411 VDNKVVDSLTAKAFADELGIPFLETSAKDSINVEQAFLTMAAEIKKKMGSQTTTGKS-AE 587
Query: 168 SVQMKGQPIQQNTNCCG 184
SVQMKGQPI Q +NCCG
Sbjct: 588 SVQMKGQPIPQKSNCCG 638
>TC216318 homologue to UP|Q43462 (Q43462) Rab7p protein, complete
Length = 860
Score = 275 bits (703), Expect = 9e-75
Identities = 148/197 (75%), Positives = 159/197 (80%), Gaps = 18/197 (9%)
Frame = +3
Query: 6 DYLFKLLIIGDSSVGKSCLLLRFADDSYDDTYISTIGVDF--------AKPPSCRL---- 53
DYLFKLL+IGDSSVGKSCLLLRFADDSY D+YISTIGVDF K ++
Sbjct: 96 DYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELEGKTVKLQIWDTA 275
Query: 54 ------TITSSYYRGAHGIIIVYDVTDIESFNNVKQWLHEIDRYANHSVSKLLVGNKCDL 107
TITSSYYRGAHGIIIVYDVT++ESFNNVKQWL+EIDRYAN SV KLLVGNK DL
Sbjct: 276 GQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKQWLNEIDRYANDSVCKLLVGNKSDL 455
Query: 108 TDNKLVHTHTAKAFADELGIPFLETSAKDSINVEQAFLTMAAEIKNKMGSQPTGSKSAAE 167
DNK+V + TAKAFADELGIPFLETSAKDSINVEQAFLTM AEIK KMGSQ T KS AE
Sbjct: 456 VDNKVVDSLTAKAFADELGIPFLETSAKDSINVEQAFLTMTAEIKKKMGSQTTAGKS-AE 632
Query: 168 SVQMKGQPIQQNTNCCG 184
+VQMKGQPI Q +NCCG
Sbjct: 633 TVQMKGQPIPQKSNCCG 683
>TC225644 UP|Q40203 (Q40203) RAB1C, complete
Length = 1161
Score = 250 bits (639), Expect = 2e-67
Identities = 130/196 (66%), Positives = 152/196 (77%), Gaps = 18/196 (9%)
Frame = +1
Query: 6 DYLFKLLIIGDSSVGKSCLLLRFADDSYDDTYISTIGVDF--------AKPPSCRL---- 53
DYLFKLL+IGDS VGKSCLLLRFADDSY D+YISTIGVDF K ++
Sbjct: 190 DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQIWDTA 369
Query: 54 ------TITSSYYRGAHGIIIVYDVTDIESFNNVKQWLHEIDRYANHSVSKLLVGNKCDL 107
TITSSYYRGAHGII+VYDVTD ESFNNVKQWL+EIDRYA+ +V+KLLVGNKCDL
Sbjct: 370 GQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDL 549
Query: 108 TDNKLVHTHTAKAFADELGIPFLETSAKDSINVEQAFLTMAAEIKNKMGSQPTGSKSAAE 167
T NK+V TAKAFADE+GIPF+ETSAK++ NVEQAF+ MAAEIKN+M SQP + +
Sbjct: 550 TANKVVSYETAKAFADEIGIPFMETSAKNATNVEQAFMAMAAEIKNRMASQPV-NNARPP 726
Query: 168 SVQMKGQPIQQNTNCC 183
+VQ++GQP+ Q CC
Sbjct: 727 TVQIRGQPVNQKAGCC 774
>TC206346 homologue to UP|Q08154 (Q08154) GTP-binding protein, complete
Length = 1106
Score = 240 bits (612), Expect = 3e-64
Identities = 123/196 (62%), Positives = 149/196 (75%), Gaps = 18/196 (9%)
Frame = +1
Query: 6 DYLFKLLIIGDSSVGKSCLLLRFADDSYDDTYISTIGVDF--------AKPPSCRL---- 53
DYLFKLL+IGDS VGKSCLLLRFADDSY ++YISTIGVDF K ++
Sbjct: 148 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTA 327
Query: 54 ------TITSSYYRGAHGIIIVYDVTDIESFNNVKQWLHEIDRYANHSVSKLLVGNKCDL 107
TITSSYYRGAHGIIIVYDVTD +SFNNVKQWL EIDRYA+ +V+KLLVGNK DL
Sbjct: 328 GQERFRTITSSYYRGAHGIIIVYDVTDEDSFNNVKQWLSEIDRYASDNVNKLLVGNKSDL 507
Query: 108 TDNKLVHTHTAKAFADELGIPFLETSAKDSINVEQAFLTMAAEIKNKMGSQPTGSKSAAE 167
T N++V TAK FAD++GIPF+ETSAKD+ NVE AF+ M+A IKN+M SQP+ + +
Sbjct: 508 TANRVVSYDTAKEFADQIGIPFMETSAKDATNVEDAFMAMSAAIKNRMASQPSANNARPP 687
Query: 168 SVQMKGQPIQQNTNCC 183
+VQ++GQP+ Q + CC
Sbjct: 688 TVQIRGQPVGQKSGCC 735
>TC227973 UP|Q39845 (Q39845) Small GTP-binding protein, complete
Length = 932
Score = 240 bits (612), Expect = 3e-64
Identities = 126/196 (64%), Positives = 148/196 (75%), Gaps = 18/196 (9%)
Frame = +1
Query: 6 DYLFKLLIIGDSSVGKSCLLLRFADDSYDDTYISTIGVDF--------AKPPSCRL---- 53
DYLFKLL+IGDS VGKSCLLLRF+DDSY ++YISTIGVDF K ++
Sbjct: 157 DYLFKLLLIGDSGVGKSCLLLRFSDDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTA 336
Query: 54 ------TITSSYYRGAHGIIIVYDVTDIESFNNVKQWLHEIDRYANHSVSKLLVGNKCDL 107
TITSSYYRGAHGIIIVYDVTD ESFNNVKQWL EIDRYA+ +V+KLLVGNKCDL
Sbjct: 337 GQERFRTITSSYYRGAHGIIIVYDVTDEESFNNVKQWLSEIDRYASDNVNKLLVGNKCDL 516
Query: 108 TDNKLVHTHTAKAFADELGIPFLETSAKDSINVEQAFLTMAAEIKNKMGSQPTGSKSAAE 167
N+ V TAKAFADE+GIPF+ETSAKD+ NVEQAF+ MAA IK++M SQP + +
Sbjct: 517 EANRAVSYETAKAFADEIGIPFMETSAKDATNVEQAFMAMAASIKDRMASQP-ANNARPP 693
Query: 168 SVQMKGQPIQQNTNCC 183
+VQ++GQP+ Q CC
Sbjct: 694 TVQIRGQPVAQKGGCC 741
>TC221792 UP|Q39861 (Q39861) GTP binding protein, complete
Length = 1005
Score = 222 bits (566), Expect = 7e-59
Identities = 124/212 (58%), Positives = 147/212 (68%), Gaps = 34/212 (16%)
Frame = +1
Query: 6 DYLFKLLIIGDSSVGKSCLLLRFADDSYDDTYISTIGVDF--------AKPPSCRL---- 53
DYLFKLL+IGDS VGKSCLLLRF+DDSY ++YISTIGVDF K ++
Sbjct: 142 DYLFKLLLIGDSGVGKSCLLLRFSDDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTA 321
Query: 54 ------TITSSYYRGAHGIIIVYDVTD-IESFNNVKQWLHEIDRYANHSVSKLLVGNKCD 106
TITSSYYRGAHGIIIVYDVTD ESFNNVKQWL EIDRYA+ +V+KLLVGNKCD
Sbjct: 322 GQERFRTITSSYYRGAHGIIIVYDVTDGEESFNNVKQWLSEIDRYASDNVNKLLVGNKCD 501
Query: 107 LTDNKLV---------------HTHTAKAFADELGIPFLETSAKDSINVEQAFLTMAAEI 151
L N+ V + TAKAFAD +GIPF+ETSAKD+ NVEQAF+ M A I
Sbjct: 502 LEANRAVSNIETADLEANRAVSNIETAKAFADGIGIPFMETSAKDATNVEQAFMAMTASI 681
Query: 152 KNKMGSQPTGSKSAAESVQMKGQPIQQNTNCC 183
K++M SQP + + +VQ++GQP+ Q CC
Sbjct: 682 KDRMASQP-ANNARPPTVQIRGQPVAQKGGCC 774
>TC203376 homologue to UP|Q41023 (Q41023) Small GTP-binding protein, complete
Length = 1011
Score = 167 bits (422), Expect = 3e-42
Identities = 92/206 (44%), Positives = 136/206 (65%), Gaps = 27/206 (13%)
Frame = +2
Query: 6 DYLFKLLIIGDSSVGKSCLLLRFADDSYDDTYISTIGVDFA----KPPSCRL-------- 53
DYL KLL+IGDS VGKSCLLLRF+D S+ ++I+TIG+DF + S R+
Sbjct: 146 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDSKRIKLQIWDTA 325
Query: 54 ------TITSSYYRGAHGIIIVYDVTDIESFNNVKQWLHEIDRYANHSVSKLLVGNKCDL 107
TIT++YYRGA GI++VYDVTD SFNN++ W+ I+++A+ +V+K+LVGNK D+
Sbjct: 326 GQERFRTITTAYYRGAMGILLVYDVTDEASFNNIRNWIRNIEQHASDNVNKILVGNKADM 505
Query: 108 TDNK-LVHTHTAKAFADELGIPFLETSAKDSINVEQAFLTMAAEIKNKMGSQPTGSKSAA 166
++K V T +A ADE GI F ETSAK ++NVE+ F ++A +IK ++ T S++
Sbjct: 506 DESKRAVPTSKGQALADEYGIKFFETSAKTNMNVEEVFFSIARDIKQRLAD--TDSRAEP 679
Query: 167 ESVQMK--------GQPIQQNTNCCG 184
+++++ GQP Q++ CCG
Sbjct: 680 QTIKINQPDQATSGGQPAQKSA-CCG 754
>TC215026 homologue to UP|Q40219 (Q40219) RAB8E, partial (92%)
Length = 1071
Score = 166 bits (421), Expect = 4e-42
Identities = 89/203 (43%), Positives = 130/203 (63%), Gaps = 24/203 (11%)
Frame = +2
Query: 6 DYLFKLLIIGDSSVGKSCLLLRFADDSYDDTYISTIGVDFA----KPPSCRL-------- 53
DYL KLL+IGDS VGKSCLLLRF+D S+ ++I+TIG+DF + R+
Sbjct: 185 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIEQDGKRIKLQIWDTA 364
Query: 54 ------TITSSYYRGAHGIIIVYDVTDIESFNNVKQWLHEIDRYANHSVSKLLVGNKCDL 107
TIT++YYRGA GI++VYDVTD SFNN++ W+ I+++A+ +V+K+LVGNK D+
Sbjct: 365 GQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADM 544
Query: 108 TDNK-LVHTHTAKAFADELGIPFLETSAKDSINVEQAFLTMAAEIKNKMG-----SQPTG 161
++K +V T +A ADE GI F ETSAK ++NVE+ F ++A +IK ++ ++P G
Sbjct: 545 DESKRVVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSKAEPAG 724
Query: 162 SKSAAESVQMKGQPIQQNTNCCG 184
K + + Q + CCG
Sbjct: 725 IKINNQLDHATAGEVAQKSACCG 793
>TC203292 homologue to UP|Q8W3J4 (Q8W3J4) Ras-related protein RAB8-1,
complete
Length = 1129
Score = 165 bits (417), Expect = 1e-41
Identities = 93/207 (44%), Positives = 134/207 (63%), Gaps = 28/207 (13%)
Frame = +1
Query: 6 DYLFKLLIIGDSSVGKSCLLLRFADDSYDDTYISTIGVDFAKPPSCRL------------ 53
DYL KLL+IGDS VGKSCLLLRF+D S+ ++I+TIG+DF K + L
Sbjct: 181 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDF-KIRTIELDGKRIKLQIWDT 357
Query: 54 -------TITSSYYRGAHGIIIVYDVTDIESFNNVKQWLHEIDRYANHSVSKLLVGNKCD 106
TIT++YYRGA GI++VYDVTD SFNN++ W+ I+++A+ +V+K+LVGNK D
Sbjct: 358 AGQERFRTITTAYYRGAMGILLVYDVTDEASFNNIRNWIRNIEQHASDNVNKILVGNKAD 537
Query: 107 LTDNK-LVHTHTAKAFADELGIPFLETSAKDSINVEQAFLTMAAEIKNKMGSQPTGSKSA 165
+ ++K V T +A ADE GI F ETSAK ++NVE+ F ++A +IK ++ T SK+
Sbjct: 538 MDESKRAVPTSKGQALADEYGIKFFETSAKTNMNVEEVFFSIARDIKQRLAD--TDSKAE 711
Query: 166 AESVQMKGQPIQ--------QNTNCCG 184
+++++ QP Q Q + CCG
Sbjct: 712 PQTIKI-NQPDQTATGGLAAQKSACCG 789
>BE190743 similar to PIR|S39565|S39 GTP-binding protein rab1 - soybean,
partial (65%)
Length = 511
Score = 140 bits (353), Expect = 3e-34
Identities = 84/159 (52%), Positives = 107/159 (66%), Gaps = 18/159 (11%)
Frame = +2
Query: 33 YDDTYISTIGVDFA--------KPPSCRL----------TITSSYYRGAHGIIIVYDVTD 74
Y ++YISTIGVDF + + ++ T+TSS YRGAHGIIIVYDVT+
Sbjct: 35 YVNSYISTIGVDFKIRTGELERQTGNLQIWDTAGQERFRTMTSSCYRGAHGIIIVYDVTE 214
Query: 75 IESFNNVKQWLHEIDRYANHSVSKLLVGNKCDLTDNKLVHTHTAKAFADELGIPFLETSA 134
+ESFNNVKQWL+EIDRYA SV + LVGNK +L D+ +V + TA+A A ELGIP LETSA
Sbjct: 215 MESFNNVKQWLNEIDRYAGDSVCERLVGNKSNLVDSGVVDSLTAQACAGELGIPLLETSA 394
Query: 135 KDSINVEQAFLTMAAEIKNKMGSQPTGSKSAAESVQMKG 173
+ VEQA L++ A + K+G Q TG A E+VQ+ G
Sbjct: 395 GELHGVEQACLSVTA*VNMKVGCQSTGG-HARETVQVTG 508
>TC215024 homologue to GB|BAB08351.1|9757904|AB015475 Rab-type small
GTP-binding protein-like {Arabidopsis thaliana;} ,
partial (87%)
Length = 895
Score = 139 bits (349), Expect(2) = 4e-34
Identities = 79/192 (41%), Positives = 119/192 (61%), Gaps = 27/192 (14%)
Frame = +2
Query: 20 GKSCLLLRFADDSYDDTYISTIGVDFAKPPSCRL-------------------TITSSYY 60
GKSCL RF+D S+ ++I+TIG+DF K + L TIT++YY
Sbjct: 44 GKSCLXXRFSDGSFTTSFITTIGIDF-KIRTIELDGKRIKLQIWDTAGQERFRTITTAYY 220
Query: 61 RGAHGIIIVYDVTDIESFNNVKQWLHEIDRYANHSVSKLLVGNKCDLTDNK-LVHTHTAK 119
RGA GI++VYDVTD SFNN++ W+ I+++A+ +V+K+LVGNK D+ ++K V T +
Sbjct: 221 RGAMGILLVYDVTDEASFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQ 400
Query: 120 AFADELGIPFLETSAKDSINVEQAFLTMAAEIKNKMGSQPTGSKSAAESVQMK------- 172
A ADE GI F ETSAK ++NVE+ F ++A +IK ++ T SK+ ++++
Sbjct: 401 ALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLAD--TDSKAEPSTIKINQDQSGGA 574
Query: 173 GQPIQQNTNCCG 184
GQ Q++ CCG
Sbjct: 575 GQAAQKSA-CCG 607
Score = 22.3 bits (46), Expect(2) = 4e-34
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +3
Query: 6 DYLFKLLIIGDSSVGK 21
DYL +IGD VGK
Sbjct: 3 DYLXXXXLIGDXGVGK 50
>TC205442 UP|Q40208 (Q40208) RAB2A, complete
Length = 1159
Score = 134 bits (338), Expect = 2e-32
Identities = 72/167 (43%), Positives = 103/167 (61%), Gaps = 18/167 (10%)
Frame = +2
Query: 7 YLFKLLIIGDSSVGKSCLLLRFADDSYDDTYISTIGVDFA--------KPPSCRL----- 53
YLFK +IIGD+ VGKSCLLL+F D + + TIGV+F KP ++
Sbjct: 110 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAG 289
Query: 54 -----TITSSYYRGAHGIIIVYDVTDIESFNNVKQWLHEIDRYANHSVSKLLVGNKCDLT 108
+IT SYYRGA G ++VYD+T E+FN++ WL + ++AN +++ +L+GNKCDL
Sbjct: 290 QESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLA 469
Query: 109 DNKLVHTHTAKAFADELGIPFLETSAKDSINVEQAFLTMAAEIKNKM 155
+ V T + FA E G+ F+E SAK + NVE+AF+ AA I K+
Sbjct: 470 HRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKI 610
>TC206349 UP|P92963 (P92963) Rab2-like protein (GTP-binding RAB2A like
protein) (At4g17170), partial (90%)
Length = 728
Score = 134 bits (338), Expect = 2e-32
Identities = 72/167 (43%), Positives = 103/167 (61%), Gaps = 18/167 (10%)
Frame = +1
Query: 7 YLFKLLIIGDSSVGKSCLLLRFADDSYDDTYISTIGVDFA--------KPPSCRL----- 53
YLFK +IIGD+ VGKSCLLL+F D + + TIGV+F KP ++
Sbjct: 172 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAG 351
Query: 54 -----TITSSYYRGAHGIIIVYDVTDIESFNNVKQWLHEIDRYANHSVSKLLVGNKCDLT 108
+IT SYYRGA G ++VYD+T E+FN++ WL + ++AN +++ +L+GNKCDL
Sbjct: 352 QESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLA 531
Query: 109 DNKLVHTHTAKAFADELGIPFLETSAKDSINVEQAFLTMAAEIKNKM 155
+ V T + FA E G+ F+E SAK + NVE+AF+ AA I K+
Sbjct: 532 HRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKI 672
>TC218982 homologue to UP|Q38922 (Q38922) ATGB2 (GTP-binding protein GB2),
complete
Length = 939
Score = 130 bits (327), Expect = 4e-31
Identities = 68/164 (41%), Positives = 103/164 (62%), Gaps = 18/164 (10%)
Frame = +3
Query: 6 DYLFKLLIIGDSSVGKSCLLLRFADDSYDDTYISTIGVDF--------AKPPSCRL---- 53
DYLFK +IIGD+ VGKSCLLL+F D + + TIGV+F ++P ++
Sbjct: 138 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDSRPIKLQIWDTA 317
Query: 54 ------TITSSYYRGAHGIIIVYDVTDIESFNNVKQWLHEIDRYANHSVSKLLVGNKCDL 107
+IT SYYRGA G ++VYD+T ++FN++ WL + ++AN +++ +L+GNKCDL
Sbjct: 318 GQESFRSITRSYYRGAAGALLVYDITRRDTFNHLASWLEDARQHANPNMTIMLIGNKCDL 497
Query: 108 TDNKLVHTHTAKAFADELGIPFLETSAKDSINVEQAFLTMAAEI 151
+ + V + FA E G+ FLE SA+ + NVE+AF+ A +I
Sbjct: 498 SHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIRTAGKI 629
>TC208849 UP|Q08154 (Q08154) GTP-binding protein, partial (53%)
Length = 454
Score = 130 bits (326), Expect = 5e-31
Identities = 71/103 (68%), Positives = 76/103 (72%), Gaps = 18/103 (17%)
Frame = +2
Query: 6 DYLFKLLIIGDSSVGKSCLLLRFADDSYDDTYISTIGVDF--------AKPPSCRL---- 53
DYLFKLL+IGDS VGKSCLLLRFADDSY ++YISTIGVDF K ++
Sbjct: 146 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTA 325
Query: 54 ------TITSSYYRGAHGIIIVYDVTDIESFNNVKQWLHEIDR 90
TITSSYYRGAHGIIIVYDVTD ESFNNVKQWL EIDR
Sbjct: 326 GQERFRTITSSYYRGAHGIIIVYDVTDEESFNNVKQWLSEIDR 454
>TC207438 homologue to UP|Q08145 (Q08145) GTP-binding protein, partial (95%)
Length = 853
Score = 129 bits (325), Expect = 6e-31
Identities = 74/202 (36%), Positives = 117/202 (57%), Gaps = 24/202 (11%)
Frame = +2
Query: 6 DYLFKLLIIGDSSVGKSCLLLRFADDSYDDTYISTIGVDF--------AKPPSCRL---- 53
+YLFK+++IGDS+VGKS LL RFA + +D +TIGV+F K ++
Sbjct: 143 EYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQLVEIDGKEIKAQIWDTA 322
Query: 54 ------TITSSYYRGAHGIIIVYDVTDIESFNNVKQWLHEIDRYANHSVSKLLVGNKCDL 107
+TS+YYRGA G ++VYD++ +F+++K+WL E+ + +V+++LVGNKCDL
Sbjct: 323 GQERFRAVTSAYYRGAVGALVVYDISRRGTFDSIKRWLQELTTQNDSTVARMLVGNKCDL 502
Query: 108 TDNKLVHTHTAKAFADELGIPFLETSAKDSINVEQAFLTMAAEIKNKMGSQPTGSKSAAE 167
+ + V T K+ A+E G+ F+ETSA D+ NV+ AF + EI N + + S S
Sbjct: 503 ENIREVSTEEGKSLAEEEGLFFMETSALDATNVQTAFEIVIREIYNNISRKVLNSDSYKA 682
Query: 168 SVQ------MKGQPIQQNTNCC 183
+ + G +Q +CC
Sbjct: 683 ELSVNRVSLVNGAGSKQGPSCC 748
>TC206875 UP|Q39844 (Q39844) Small GTP-binding protein (Fragment), complete
Length = 871
Score = 129 bits (323), Expect = 1e-30
Identities = 74/192 (38%), Positives = 114/192 (58%), Gaps = 21/192 (10%)
Frame = +3
Query: 6 DYLFKLLIIGDSSVGKSCLLLRFADDSYDDTYISTIGVDFA--------KPPSCRL---- 53
DY+FK+++IGDS+VGKS +L RFA + + STIGV+F K ++
Sbjct: 69 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKSTIGVEFQTRTLVIDHKTVKAQIWDTA 248
Query: 54 ------TITSSYYRGAHGIIIVYDVTDIESFNNVKQWLHEIDRYANHSVSKLLVGNKCDL 107
+TS+YYRGA G ++VYD+T ++F+++ +WL E+ +A+ ++ +L GNKCDL
Sbjct: 249 GQERYRAVTSAYYRGAVGAMLVYDITKRQTFDHIPRWLEELRNHADKNIVIILTGNKCDL 428
Query: 108 TDNKLVHTHTAKAFADELGIPFLETSAKDSINVEQAFLTMAAE---IKNKMGSQPTGSKS 164
+ + V T AK FA++ G+ FLETSA ++ NVE AF+T+ E I NK ++
Sbjct: 429 ENQRDVPTEDAKEFAEKEGLFFLETSALEATNVETAFITVLTEIYNIVNKKNLTADENQG 608
Query: 165 AAESVQMKGQPI 176
S + GQ I
Sbjct: 609 NGNSASLSGQKI 644
>TC216386 homologue to UP|RB1C_ARATH (O04486) Ras-related protein Rab11C,
partial (85%)
Length = 967
Score = 127 bits (320), Expect = 2e-30
Identities = 79/205 (38%), Positives = 117/205 (56%), Gaps = 27/205 (13%)
Frame = +2
Query: 6 DYLFKLLIIGDSSVGKSCLLLRFADDSYDDTYISTIGVDFA--------KPPSCRL---- 53
DYLFK+++IGDS VGKS LL RF + + STIGV+FA + ++
Sbjct: 206 DYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTVKAQIWDTA 385
Query: 54 ------TITSSYYRGAHGIIIVYDVTDIESFNNVKQWLHEIDRYANHSVSKLLVGNKCDL 107
ITS+YYRGA G ++VYDVT +F NV +WL E+ +A+ ++ +L+GNK DL
Sbjct: 386 GQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADANIVIMLIGNKTDL 565
Query: 108 TDNKLVHTHTAKAFADELGIPFLETSAKDSINVEQAFLTMAAEIKNKMGSQPTGSKSAAE 167
+ V T A+ +A++ G+ F+ETSA ++ NVE AF T+ AEI + + S A
Sbjct: 566 KHLRAVATEDAQGYAEKEGLSFIETSALEATNVENAFQTILAEIYRIISKKSLSSNDPAA 745
Query: 168 SVQMKGQPI------QQNTN---CC 183
++ +G+ I + NTN CC
Sbjct: 746 NIIKEGKTITVGGAPEPNTNKPSCC 820
>TC206925 homologue to UP|Q39844 (Q39844) Small GTP-binding protein
(Fragment), partial (95%)
Length = 1111
Score = 127 bits (320), Expect = 2e-30
Identities = 77/208 (37%), Positives = 120/208 (57%), Gaps = 30/208 (14%)
Frame = +1
Query: 6 DYLFKLLIIGDSSVGKSCLLLRFADDSYDDTYISTIGVDFA--------KPPSCRL---- 53
DY+FK+++IGDS+VGKS +L RFA + + +TIGV+F K ++
Sbjct: 295 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSIKAQIWDTA 474
Query: 54 ------TITSSYYRGAHGIIIVYDVTDIESFNNVKQWLHEIDRYANHSVSKLLVGNKCDL 107
+TS+YYRGA G ++VYD+T +SF+++ +WL E+ +A+ ++ +L+GNK DL
Sbjct: 475 GQERYRAVTSAYYRGAVGAMLVYDITKRQSFDHIPRWLEELRNHADKNIVIILIGNKSDL 654
Query: 108 TDNKLVHTHTAKAFADELGIPFLETSAKDSINVEQAFLTMAAEI------KNKMGSQPTG 161
+ + V T AK FA++ G+ FLETSA ++ NVE AF+T+ EI KN S G
Sbjct: 655 ENQRQVPTEDAKEFAEKEGLFFLETSALEATNVETAFMTVLTEIFNIINKKNLAASDNQG 834
Query: 162 SKSAAESVQMK------GQPIQQNTNCC 183
+ ++A K Q I + + CC
Sbjct: 835 NDNSASLSGKKIIVPGPAQEIPKRSMCC 918
>TC229079 homologue to UP|Q40200 (Q40200) RAB11J, complete
Length = 1096
Score = 124 bits (311), Expect = 3e-29
Identities = 71/166 (42%), Positives = 103/166 (61%), Gaps = 18/166 (10%)
Frame = +2
Query: 6 DYLFKLLIIGDSSVGKSCLLLRFADDSYDDTYISTIGVDF--------AKPPSCRL---- 53
DYLFK+++IGDS+VGKS LL RFA D + STIGV+F K ++
Sbjct: 341 DYLFKIVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTA 520
Query: 54 ------TITSSYYRGAHGIIIVYDVTDIESFNNVKQWLHEIDRYANHSVSKLLVGNKCDL 107
+TS+YYRGA G ++VYD++ ++F+++ +WL+E+ +++ +V +LVGNK DL
Sbjct: 521 GQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDL 700
Query: 108 TDNKLVHTHTAKAFADELGIPFLETSAKDSINVEQAFLTMAAEIKN 153
D + V T KA A+ G+ F+ETSA DS NV AF T+ EI N
Sbjct: 701 KDAREVATAEGKALAEAQGLFFMETSALDSSNVAAAFETVVKEIYN 838
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.318 0.134 0.392
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,816,006
Number of Sequences: 63676
Number of extensions: 94011
Number of successful extensions: 583
Number of sequences better than 10.0: 155
Number of HSP's better than 10.0 without gapping: 498
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 501
length of query: 184
length of database: 12,639,632
effective HSP length: 91
effective length of query: 93
effective length of database: 6,845,116
effective search space: 636595788
effective search space used: 636595788
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)
Medicago: description of AC140549.10