TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC140034.3 + phase: 0 
         (199 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BQ576456                                                               69  1e-12
TC232778 similar to UP|Q9LNG5 (Q9LNG5) F21D18.16, partial (5%)         45  2e-05
TC211858                                                               37  2e-04
BI470376 weakly similar to GP|14090338|dbj P0638D12.5 {Oryza sat...    28  3.6
TC203856 homologue to GB|AAG40366.1|11762176|AF325014 At2g01140 ...    27  4.8
TC209583                                                               27  8.1

>BQ576456 
          Length = 424

 Score = 69.3 bits (168), Expect = 1e-12
 Identities = 49/150 (32%), Positives = 68/150 (44%)
 Frame = +1

Query: 4   GEMTVTLDDFACLTHLPIEGRMLDYEKKMPKHEGAALLMTYLGVSQHEAEKICNQEYGGY 63
           GE+T+TLDD ACL HLPI G +  +E  +   E   LLM  L VS+ EA     + +  Y
Sbjct: 31  GELTITLDDMACLLHLPITGALHRFE-PLGVDEAVLLLMELLEVSREEARAKIVRAHRAY 207

Query: 64  ISYPRLRDFYTSYLGRANVLAGTEDPEELEELARVRTYCVRWYLMYLVGCLLFDDRSNKR 123
           +    LR+ Y S                    AR     VR YL +LV C LF ++S   
Sbjct: 208 VRLSWLREVYQSRC-----------------QARCWIVAVRAYLFHLVDCTLFANKSATH 336

Query: 124 IELIYLTTMADGYAGMRNYSWGGMTLAYLY 153
           + +++L    D       Y WG   L ++Y
Sbjct: 337 VHVVHLKGF*D-LC*SGGYGWGVAALVHMY 423


>TC232778 similar to UP|Q9LNG5 (Q9LNG5) F21D18.16, partial (5%)
          Length = 746

 Score = 45.4 bits (106), Expect = 2e-05
 Identities = 43/153 (28%), Positives = 66/153 (43%)
 Frame = -1

Query: 4   GEMTVTLDDFACLTHLPIEGRMLDYEKKMPKHEGAALLMTYLGVSQHEAEKICNQEYGGY 63
           GE T+TL D   L  L  +G  L     +   + A L    LGV   E E       G  
Sbjct: 422 GEATITLQDVLILLGLRTDGAPLIGSTNL---DWADLCEELLGVRPQEGEI-----EGSV 267

Query: 64  ISYPRLRDFYTSYLGRANVLAGTEDPEELEELARVRTYCVRWYLMYLVGCLLFDDRSNKR 123
           +    L      Y    N+     D   +E+L R     +R +++  +G ++F ++S+ R
Sbjct: 266 VKLSWL----AHYFSHINI-----DEGNVEQLQRF----IRAWILRFIGGVIFVNKSSSR 126

Query: 124 IELIYLTTMADGYAGMRNYSWGGMTLAYLYGEL 156
           + L YL  + D +     Y+WG   LAYLY E+
Sbjct: 125 VSLRYLQFLRD-FE*CSTYAWGPAMLAYLYREM 30


>TC211858 
          Length = 524

 Score = 36.6 bits (83), Expect(2) = 2e-04
 Identities = 23/68 (33%), Positives = 35/68 (50%), Gaps = 1/68 (1%)
 Frame = -1

Query: 124 IELIYLTTMAD-GYAGMRNYSWGGMTLAYLYGELADACRPGHRALGGSVTLLTVRKLKFY 182
           + ++YL    D G +G   Y+WG   L ++Y +L +A R   R + G +TLL        
Sbjct: 470 VHVVYLDAFRDLGQSG--GYAWGVAALVHMYNQLDEASRTTTRQIVGYLTLL-------- 321

Query: 183 IYVNFIFL 190
             VNF+FL
Sbjct: 320 -QVNFVFL 300



 Score = 24.6 bits (52), Expect(2) = 2e-04
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = -2

Query: 106 YLMYLVGCLLFDDRS 120
           YL++LVGC LF ++S
Sbjct: 523 YLLHLVGCTLFANKS 479


>BI470376 weakly similar to GP|14090338|dbj P0638D12.5 {Oryza sativa
           (japonica cultivar-group)}, partial (5%)
          Length = 429

 Score = 27.7 bits (60), Expect = 3.6
 Identities = 11/23 (47%), Positives = 16/23 (68%)
 Frame = -1

Query: 4   GEMTVTLDDFACLTHLPIEGRML 26
           GE T+TL D + L  +P++GR L
Sbjct: 273 GEATITLQDVSVLLGIPVDGRPL 205


>TC203856 homologue to GB|AAG40366.1|11762176|AF325014 At2g01140 {Arabidopsis
            thaliana;} , partial (93%)
          Length = 1641

 Score = 27.3 bits (59), Expect = 4.8
 Identities = 10/17 (58%), Positives = 15/17 (87%)
 Frame = -1

Query: 177  RKLKFYIYVNFIFLLYF 193
            R++K+Y  VNF+FLL+F
Sbjct: 1542 RQIKYY*AVNFVFLLFF 1492


>TC209583 
          Length = 1349

 Score = 26.6 bits (57), Expect = 8.1
 Identities = 15/37 (40%), Positives = 20/37 (53%)
 Frame = +2

Query: 70  RDFYTSYLGRANVLAGTEDPEELEELARVRTYCVRWY 106
           RD YTS LG A  LA ++DP   E +  +     RW+
Sbjct: 851 RDDYTSVLGLAENLALSKDPCVKEFVKLLYMIMFRWF 961


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.325    0.142    0.440 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,272,732
Number of Sequences: 63676
Number of extensions: 126493
Number of successful extensions: 787
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 785
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 787
length of query: 199
length of database: 12,639,632
effective HSP length: 92
effective length of query: 107
effective length of database: 6,781,440
effective search space: 725614080
effective search space used: 725614080
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 56 (26.2 bits)