BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC140030.1 + phase: 0
(336 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC229335 similar to UP|Q39540 (Q39540) AOBP (Ascorbate oxidase p... 210 8e-55
CA939085 149 2e-36
TC221073 similar to UP|Q93ZL5 (Q93ZL5) AT5g39660/MIJ24_130, part... 142 2e-34
TC233299 homologue to UP|Q39540 (Q39540) AOBP (Ascorbate oxidase... 140 6e-34
BI786500 132 2e-31
TC211022 similar to UP|O81600 (O81600) H-protein promoter bindin... 119 1e-27
TC210896 similar to UP|Q39540 (Q39540) AOBP (Ascorbate oxidase p... 106 1e-23
BE330956 similar to PIR|T09661|T096 ascorbate oxidase promoter-b... 100 9e-22
BU547702 similar to GP|15983797|gb| AT5g39660/MIJ24_130 {Arabido... 94 7e-20
TC222381 similar to UP|Q76KV2 (Q76KV2) DNA binding with one fing... 90 1e-18
TC219906 homologue to UP|Q9M4G1 (Q9M4G1) Dof zinc finger protein... 90 2e-18
TC213102 homologue to UP|O82155 (O82155) Dof zinc finger protein... 88 5e-18
TC229486 similar to UP|Q76KV2 (Q76KV2) DNA binding with one fing... 88 6e-18
BE611146 similar to GP|2262110|gb|A zinc finger protein isolog {... 88 6e-18
TC221762 homologue to UP|Q76KV0 (Q76KV0) DNA binding with one fi... 88 6e-18
AW100071 similar to GP|9758539|dbj| DNA binding protein-like {Ar... 87 8e-18
TC230109 homologue to UP|Q8LDR0 (Q8LDR0) Zinc finger protein OBP... 87 1e-17
BI969322 87 1e-17
BM094932 86 2e-17
TC208897 similar to UP|Q9SXG8 (Q9SXG8) Dof zinc finger protein, ... 86 2e-17
>TC229335 similar to UP|Q39540 (Q39540) AOBP (Ascorbate oxidase
promoter-binding protein), partial (34%)
Length = 1181
Score = 210 bits (534), Expect = 8e-55
Identities = 127/292 (43%), Positives = 170/292 (57%), Gaps = 17/292 (5%)
Frame = +3
Query: 62 AKLNSPNGIH--SLGNGAAVLTF--DSNPPLCNTMASVLNIAERTQ-NCVSNGFHHASS- 115
A++++ NG H +L VL+F D++ P+C++MAS++N+ E+ N NGFHH
Sbjct: 6 ARIDAQNGTHLPTLKGNGRVLSFGLDAHAPICDSMASLMNLGEKKALNGTRNGFHHGFED 185
Query: 116 -------YGGEN--DHSIGVSVTASNSSERKSHTSTNGLVDKGVEGFPPQLQHIPSPFLP 166
GEN D S S+T S+ + ++ GF PQ+ IP P
Sbjct: 186 QRLPVPCKSGENGDDSSTTSSITISSPKGENNKSTFQQQPLPQNHGFLPQVPCIPGVPWP 365
Query: 167 YTWNSAMPPPTFCPPNYPLAFYTPVTPPAYWGC-MPPPWNIPCISPGSASVN-ESDSAHS 224
YTWNS +PPP CP +PL FY P +W C MP WN+P S S + N +S S+
Sbjct: 366 YTWNSPVPPPALCPSGFPLPFY----PATFWNCGMPGNWNVPWFSSSSPASNLKSPSSSP 533
Query: 225 SVPTLGKHSRDGNIITSVNSPKEKPETEHNSTESSVLIPKTLRFDDPSEAAKSSLWSKLG 284
+ PTLGKHSRD ++I + KE+ T N SVL+PKTLR DDPSEAAKSS+W+ LG
Sbjct: 534 NSPTLGKHSRDSDMIKQDSLHKEEASTPRNG---SVLVPKTLRIDDPSEAAKSSIWATLG 704
Query: 285 INNDKANSLNGGGMFNGFQSKGKDMNHSVGTSPLMYANPAALSRSRTFHEET 336
I N+ S++GG MF FQSK + NH V SP++ ANPAALSRS FHE +
Sbjct: 705 IKNE---SVSGGAMFKAFQSKKGEKNH-VEASPMLMANPAALSRSLNFHENS 848
>CA939085
Length = 421
Score = 149 bits (376), Expect = 2e-36
Identities = 84/150 (56%), Positives = 99/150 (66%), Gaps = 12/150 (8%)
Frame = +1
Query: 62 AKLNSPNGIHS--LGNGAAVLTFDSNPPLCNTMASVLNIAERTQNCVSNGFHHAS----- 114
A LN+PNG+H+ LGNGAAVLTF + PLC+TMAS+LNIAER Q+CV NGF
Sbjct: 1 ATLNAPNGLHNAVLGNGAAVLTFGPDSPLCDTMASMLNIAERAQSCVPNGFQATEPNSFV 180
Query: 115 SYGGEND-----HSIGVSVTASNSSERKSHTSTNGLVDKGVEGFPPQLQHIPSPFLPYTW 169
SY E D HS GVSV +++S SH+ ++ VDK VEGF PQL + PS PY
Sbjct: 181 SYRKEEDGSTSGHSTGVSVATTSTS---SHSGSHESVDKRVEGFTPQLPYFPSGPWPY-- 345
Query: 170 NSAMPPPTFCPPNYPLAFYTPVTPPAYWGC 199
MPPPTFCPP YPL+FY T PAYWGC
Sbjct: 346 --PMPPPTFCPPGYPLSFY---TTPAYWGC 420
>TC221073 similar to UP|Q93ZL5 (Q93ZL5) AT5g39660/MIJ24_130, partial (21%)
Length = 692
Score = 142 bits (359), Expect = 2e-34
Identities = 70/103 (67%), Positives = 78/103 (74%), Gaps = 6/103 (5%)
Frame = +1
Query: 1 MDTKFCYFNNYNVNQPRHFCKKCQRYWTAGGTMRNVPVGAGRRKNKNLSTSHYRHLIIPE 60
MDTKFCY+NNYNVNQPRHFCK CQRYWTAGG MRNVPVGAGRRKNKN TS YR + +PE
Sbjct: 385 MDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGVMRNVPVGAGRRKNKNF-TSQYRQITVPE 561
Query: 61 GAKLNS----PNGIH--SLGNGAAVLTFDSNPPLCNTMASVLN 97
A L+S PNG+ SL A +L F S+ PLC +M SVLN
Sbjct: 562 AALLSSQPDLPNGVSHPSLNCNATLLAFGSDTPLCESMTSVLN 690
>TC233299 homologue to UP|Q39540 (Q39540) AOBP (Ascorbate oxidase
promoter-binding protein), partial (13%)
Length = 892
Score = 140 bits (354), Expect = 6e-34
Identities = 87/136 (63%), Positives = 96/136 (69%), Gaps = 4/136 (2%)
Frame = +3
Query: 205 NIPCISPGSASVNESDSAHSSVPTLGKHSRDGNIITSVNSPKEKPETEHNSTESSVLIPK 264
NI ISP S SVN S SV TLGKHSRDGNII NS +E + EH S+E +VLIPK
Sbjct: 9 NISSISPQS-SVNNS----VSVLTLGKHSRDGNIIAPSNSQREMHDMEHKSSEHNVLIPK 173
Query: 265 TLRFDDPSEAAKS--SLWSKLGINNDKANSLNGGGMFNGF-QSKGKDMN-HSVGTSPLMY 320
TLR DDPSEAAKS S+WSKLGI +DKA S GG+F F SKG DMN H V SPL+
Sbjct: 174 TLRIDDPSEAAKSSISMWSKLGIKDDKAGS---GGLFKAFPSSKGNDMNHHMVEASPLLQ 344
Query: 321 ANPAALSRSRTFHEET 336
ANPAALSRS TF E+T
Sbjct: 345 ANPAALSRSLTFREQT 392
>BI786500
Length = 407
Score = 132 bits (332), Expect = 2e-31
Identities = 77/137 (56%), Positives = 89/137 (64%), Gaps = 17/137 (12%)
Frame = +3
Query: 11 YNVNQPRHFCKKCQRYWTAGGTMRNVPVGAGRRKNKNLSTSHYRHLIIPEGAKLNS---- 66
YNVNQPRHFCK CQRYWTAGGTMRNVPVGAGRRKNK+ S SHYR + + E A N
Sbjct: 3 YNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKS-SASHYRQITVSEAALQNPRTDL 179
Query: 67 PNGIH--SLGNGAAVLTFDSNPPLCNTMASVLNIAERTQ-NCVSNGFH----------HA 113
PNG + SL VLTF ++ PLC +MASVLN+A++T N NGFH HA
Sbjct: 180 PNGAYHPSLKCNGTVLTFGTDTPLCESMASVLNLADKTMPNYTRNGFHKPEELRIPVPHA 359
Query: 114 SSYGGENDHSIGVSVTA 130
S G+ D S SVT+
Sbjct: 360 SGEKGD-DQSNKSSVTS 407
>TC211022 similar to UP|O81600 (O81600) H-protein promoter binding factor-2a,
partial (19%)
Length = 578
Score = 119 bits (299), Expect = 1e-27
Identities = 53/60 (88%), Positives = 56/60 (93%)
Frame = +1
Query: 1 MDTKFCYFNNYNVNQPRHFCKKCQRYWTAGGTMRNVPVGAGRRKNKNLSTSHYRHLIIPE 60
MDTKFCY+NNYNVNQPR+FCK CQRYWTAGGTMRNVPVGAGRRKNKN STSHYRH+ I E
Sbjct: 376 MDTKFCYYNNYNVNQPRYFCKACQRYWTAGGTMRNVPVGAGRRKNKN-STSHYRHITISE 552
>TC210896 similar to UP|Q39540 (Q39540) AOBP (Ascorbate oxidase
promoter-binding protein), partial (15%)
Length = 633
Score = 106 bits (265), Expect = 1e-23
Identities = 74/200 (37%), Positives = 102/200 (51%), Gaps = 17/200 (8%)
Frame = +1
Query: 52 HYRHLIIPEG---AKLNSPNGIHSLGNGAAVLTFDSNPPLCNTMASVLNI-AER---TQN 104
HYRH+ I E A++++PNG H L VL+F +PP+C++MAS+LN+ AE+ N
Sbjct: 1 HYRHITISEALQAARIDAPNGTHLLKQNGRVLSFGLDPPICDSMASILNLTAEKKGTLNN 180
Query: 105 CVSNGFH----------HASSYGGENDHSIGVSVTASNSSERKSHTSTNGLVDKGVEGFP 154
NGFH H ++ +D S S+T SN KS TS ++ GF
Sbjct: 181 NTRNGFHTIEDQRNKDNHNNNNNNGDDCSSASSITVSNEESGKS-TSQESIMVPNSNGFI 357
Query: 155 PQLQHIPSPFLPYTWNSAMPPPTFCPPNYPLAFYTPVTPPAYWGCMPPPWNIPCISPGSA 214
Q+ I + PY + SA P CPP +P++FY P A+W PW S SA
Sbjct: 358 HQVPCISTLPWPYPFPSA--APAMCPPGFPMSFY----PAAFWNI---PWFPSQHSHHSA 510
Query: 215 SVNESDSAHSSVPTLGKHSR 234
S S+ + PTLGKHSR
Sbjct: 511 PTPRSPSSGPNSPTLGKHSR 570
>BE330956 similar to PIR|T09661|T096 ascorbate oxidase promoter-binding
protein AOBP - winter squash, partial (14%)
Length = 265
Score = 100 bits (249), Expect = 9e-22
Identities = 52/91 (57%), Positives = 64/91 (70%)
Frame = +2
Query: 246 KEKPETEHNSTESSVLIPKTLRFDDPSEAAKSSLWSKLGINNDKANSLNGGGMFNGFQSK 305
+E P + N SVL+PKTLR DDPSEAAKSS+W+ LGI N+ + GGGMF GFQSK
Sbjct: 11 EESPSRQRNG---SVLVPKTLRIDDPSEAAKSSIWATLGIKNE---CVTGGGMFKGFQSK 172
Query: 306 GKDMNHSVGTSPLMYANPAALSRSRTFHEET 336
D +H SP++ ANPAALSRS +FHE +
Sbjct: 173 KDDKHHVDEASPVLRANPAALSRSLSFHENS 265
>BU547702 similar to GP|15983797|gb| AT5g39660/MIJ24_130 {Arabidopsis
thaliana}, partial (12%)
Length = 674
Score = 94.4 bits (233), Expect = 7e-20
Identities = 47/105 (44%), Positives = 65/105 (61%)
Frame = -1
Query: 230 GKHSRDGNIITSVNSPKEKPETEHNSTESSVLIPKTLRFDDPSEAAKSSLWSKLGINNDK 289
GKHSR+ N+ S E ++ E + +PKTLR D EAAK+S+W+ LGI N+K
Sbjct: 674 GKHSREENMHKSNGVAVEDEHSKEXXKEKCLWVPKTLRIDXXGEAAKTSIWTTLGIKNNK 495
Query: 290 ANSLNGGGMFNGFQSKGKDMNHSVGTSPLMYANPAALSRSRTFHE 334
A+ GGG+F S+G + N + SP+++ANPAALSRS F E
Sbjct: 494 ADLXPGGGLFKSLPSQGGEKNRVIKNSPVLHANPAALSRSINFQE 360
>TC222381 similar to UP|Q76KV2 (Q76KV2) DNA binding with one finger 2
protein, partial (36%)
Length = 485
Score = 90.1 bits (222), Expect = 1e-18
Identities = 42/84 (50%), Positives = 61/84 (72%)
Frame = +1
Query: 2 DTKFCYFNNYNVNQPRHFCKKCQRYWTAGGTMRNVPVGAGRRKNKNLSTSHYRHLIIPEG 61
+TKFCY+NNY+++QPR+FCK C+RYWT GGT+RNVPVG G RKNK S+S + +
Sbjct: 181 NTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNKRSSSSSSTSKRVQDQ 360
Query: 62 AKLNSPNGIHSLGNGAAVLTFDSN 85
A +PN ++ L +++++DSN
Sbjct: 361 A--FTPN-VNPLTGLPSLMSYDSN 423
>TC219906 homologue to UP|Q9M4G1 (Q9M4G1) Dof zinc finger protein, partial
(25%)
Length = 1451
Score = 89.7 bits (221), Expect = 2e-18
Identities = 56/166 (33%), Positives = 77/166 (45%), Gaps = 4/166 (2%)
Frame = +1
Query: 2 DTKFCYFNNYNVNQPRHFCKKCQRYWTAGGTMRNVPVGAGRRKNKNLSTSHYRHLIIPEG 61
+TKFCYFNNY+++QPRHFCK C+RYWT GG +RNVPVG G R+NK S + E
Sbjct: 415 NTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKKNKRSRSKSPASSEK 594
Query: 62 AKLN-SPNGIHSLGNGAAVLTFDSNPPLCNTMASVLNIAERTQNCVSNGFHHASSYGGEN 120
L+ S + S G ++ PP MAS+ N+ + G
Sbjct: 595 QTLSGSTSATPSGGTTHELVGQLPQPPNLPFMASLQNLNRYAVGNMGLGLREIHGQNENM 774
Query: 121 DHSIGVSVTASNSSER---KSHTSTNGLVDKGVEGFPPQLQHIPSP 163
IG S A ++ + NG +P Q + I +P
Sbjct: 775 GFQIGNSSDAGGGMDQWRIQQVPFLNGFESTSAGSYPFQNEGIETP 912
>TC213102 homologue to UP|O82155 (O82155) Dof zinc finger protein, partial
(34%)
Length = 451
Score = 88.2 bits (217), Expect = 5e-18
Identities = 34/50 (68%), Positives = 42/50 (84%)
Frame = +1
Query: 2 DTKFCYFNNYNVNQPRHFCKKCQRYWTAGGTMRNVPVGAGRRKNKNLSTS 51
+TKFCY+NNYN++QPRHFCK C+RYWT GG +RN+PVG G RKN S+S
Sbjct: 82 NTKFCYYNNYNLSQPRHFCKNCRRYWTKGGALRNIPVGGGSRKNTKRSSS 231
>TC229486 similar to UP|Q76KV2 (Q76KV2) DNA binding with one finger 2
protein, partial (21%)
Length = 1297
Score = 87.8 bits (216), Expect = 6e-18
Identities = 33/50 (66%), Positives = 42/50 (84%)
Frame = +1
Query: 2 DTKFCYFNNYNVNQPRHFCKKCQRYWTAGGTMRNVPVGAGRRKNKNLSTS 51
+TKFCY+NNYN+ QPRHFCK C+RYWT GG +RNVP+G G RKNK++ +
Sbjct: 238 NTKFCYYNNYNLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKSIGVA 387
>BE611146 similar to GP|2262110|gb|A zinc finger protein isolog {Arabidopsis
thaliana}, partial (26%)
Length = 424
Score = 87.8 bits (216), Expect = 6e-18
Identities = 38/75 (50%), Positives = 50/75 (66%)
Frame = +1
Query: 1 MDTKFCYFNNYNVNQPRHFCKKCQRYWTAGGTMRNVPVGAGRRKNKNLSTSHYRHLIIPE 60
++TKFCY+NNY++ QPR+FCK C+RYWT GGT+RN+PVG G RKNK S
Sbjct: 223 INTKFCYYNNYSLTQPRYFCKTCRRYWTEGGTLRNIPVGGGSRKNKRSS----------- 369
Query: 61 GAKLNSPNGIHSLGN 75
A ++PN H+ N
Sbjct: 370 -ASCSTPNNSHNNNN 411
>TC221762 homologue to UP|Q76KV0 (Q76KV0) DNA binding with one finger 4
protein, partial (19%)
Length = 472
Score = 87.8 bits (216), Expect = 6e-18
Identities = 36/53 (67%), Positives = 45/53 (83%), Gaps = 2/53 (3%)
Frame = +1
Query: 2 DTKFCYFNNYNVNQPRHFCKKCQRYWTAGGTMRNVPVGAGRRKNKNLS--TSH 52
+TKFCY+NNY+++QPRHFCK C+RYWT GGT+RNVPVG G RKNK + T+H
Sbjct: 172 NTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRVKRPTNH 330
>AW100071 similar to GP|9758539|dbj| DNA binding protein-like {Arabidopsis
thaliana}, partial (31%)
Length = 339
Score = 87.4 bits (215), Expect = 8e-18
Identities = 33/52 (63%), Positives = 43/52 (82%)
Frame = +1
Query: 2 DTKFCYFNNYNVNQPRHFCKKCQRYWTAGGTMRNVPVGAGRRKNKNLSTSHY 53
+TKFCY+NNYN +QPRHFCK C+RYWT GGT+R++PVG G R+N S +H+
Sbjct: 127 NTKFCYYNNYNYSQPRHFCKSCRRYWTHGGTLRDIPVGGGSRQNAKRSCTHH 282
>TC230109 homologue to UP|Q8LDR0 (Q8LDR0) Zinc finger protein OBP4-like,
partial (27%)
Length = 696
Score = 87.0 bits (214), Expect = 1e-17
Identities = 34/49 (69%), Positives = 42/49 (85%)
Frame = +2
Query: 1 MDTKFCYFNNYNVNQPRHFCKKCQRYWTAGGTMRNVPVGAGRRKNKNLS 49
++TKFCY+NNYN++QPRHFCK C+RYWT GG +RNVPVG G RK+K S
Sbjct: 254 LNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRNVPVGGGCRKSKRSS 400
>BI969322
Length = 650
Score = 87.0 bits (214), Expect = 1e-17
Identities = 35/51 (68%), Positives = 42/51 (81%)
Frame = +3
Query: 1 MDTKFCYFNNYNVNQPRHFCKKCQRYWTAGGTMRNVPVGAGRRKNKNLSTS 51
M+TKFCYFNNY+++QPRHFCK C+RYWT GGT RN+PVG G RK K T+
Sbjct: 267 MNTKFCYFNNYSLSQPRHFCKACKRYWTLGGTFRNIPVGGGSRKVKRGKTN 419
>BM094932
Length = 412
Score = 86.3 bits (212), Expect = 2e-17
Identities = 34/61 (55%), Positives = 44/61 (71%)
Frame = +2
Query: 2 DTKFCYFNNYNVNQPRHFCKKCQRYWTAGGTMRNVPVGAGRRKNKNLSTSHYRHLIIPEG 61
+TKFCY+NNYN++QPRHFCK C+RYWT GG +RN+PVG G RK S+S + P
Sbjct: 50 NTKFCYYNNYNLSQPRHFCKNCRRYWTKGGALRNIPVGGGSRKTTKRSSSTSKRSSAPSS 229
Query: 62 A 62
+
Sbjct: 230 S 232
>TC208897 similar to UP|Q9SXG8 (Q9SXG8) Dof zinc finger protein, partial
(25%)
Length = 1067
Score = 85.9 bits (211), Expect = 2e-17
Identities = 33/50 (66%), Positives = 43/50 (86%)
Frame = +1
Query: 2 DTKFCYFNNYNVNQPRHFCKKCQRYWTAGGTMRNVPVGAGRRKNKNLSTS 51
+TKFCY+NNY++ QPR+FCK C+RYWT GG++RNVPVG G RKNK +S +
Sbjct: 148 NTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKKVSVT 297
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.313 0.130 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,185,065
Number of Sequences: 63676
Number of extensions: 412919
Number of successful extensions: 3745
Number of sequences better than 10.0: 368
Number of HSP's better than 10.0 without gapping: 2500
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3194
length of query: 336
length of database: 12,639,632
effective HSP length: 98
effective length of query: 238
effective length of database: 6,399,384
effective search space: 1523053392
effective search space used: 1523053392
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 59 (27.3 bits)
Medicago: description of AC140030.1