BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC140028.7 + phase: 0 /pseudo
(703 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC227287 similar to UP|CG17_ARATH (Q8L7Z0) Probable cyclic nucle... 419 e-117
TC221594 similar to UP|Q9M7Q8 (Q9M7Q8) Cyclic nucleotide-gated c... 349 2e-96
TC216374 similar to UP|CNG6_ARATH (O82226) Probable cyclic nucle... 310 1e-84
TC216375 similar to UP|CNG6_ARATH (O82226) Probable cyclic nucle... 278 5e-75
TC220014 homologue to UP|Q8H6U1 (Q8H6U1) Cyclic nucleotide-gated... 254 1e-67
TC207548 similar to UP|CG20_ARATH (Q9LD37) Probable cyclic nucle... 234 1e-61
CO984626 210 2e-54
TC206803 similar to UP|CNG2_ARATH (O65718) Cyclic nucleotide-gat... 200 2e-51
BQ297066 homologue to GP|24943196|gb cyclic nucleotide-gated cha... 120 1e-47
TC219373 similar to UP|CG20_ARATH (Q9LD37) Probable cyclic nucle... 150 2e-36
TC219859 similar to UP|CG17_ARATH (Q8L7Z0) Probable cyclic nucle... 140 2e-33
BG237534 similar to PIR|T52574|T52 cyclic nucleotide and calmodu... 129 4e-30
CO984580 128 8e-30
TC233419 homologue to UP|CNG4_ARATH (Q94AS9) Cyclic nucleotide-g... 70 5e-27
BI471105 101 1e-21
BM094700 similar to GP|8131898|gb| cyclic nucleotide-binding tra... 79 2e-20
BU547719 weakly similar to GP|21703138|gb| AT4g30360/F17I23_300 ... 88 1e-17
CD399837 similar to GP|24943192|gb cyclic nucleotide-gated chann... 87 3e-17
AW759050 82 1e-15
BM108212 weakly similar to GP|9294159|dbj| cyclic nucleotide and... 81 2e-15
>TC227287 similar to UP|CG17_ARATH (Q8L7Z0) Probable cyclic nucleotide-gated
ion channel 17 (Cyclic nucleotide-and
calmodulin-regulated ion channel 17), partial (43%)
Length = 1743
Score = 419 bits (1077), Expect = e-117
Identities = 214/357 (59%), Positives = 268/357 (74%), Gaps = 3/357 (0%)
Frame = +1
Query: 349 SSSGENLLTSTHVAEINFAVIVAILGLVLFALLIGNMQTYLQSTTIRLEEWRIRRTDTER 408
SS G+NL TST + E +FA+++AILGLVLF+ LIGNMQTYLQS TIRLEEWR+++ DTE
Sbjct: 193 SSYGQNLETSTFIGETSFAIVIAILGLVLFSHLIGNMQTYLQSITIRLEEWRLKQRDTEE 372
Query: 409 WMHHRQLPHYLKENVRRHDQFRWVATRGVDEEAILRDLPVDLRRDIKRHLCLNLVRQVPL 468
WM HRQLP L+ VRR Q++W+ATRGVDEE ILR LP DLRRDI+RHLCL+LVR+VP
Sbjct: 373 WMRHRQLPEDLRSRVRRFVQYKWLATRGVDEETILRALPADLRRDIQRHLCLDLVRRVPF 552
Query: 469 FDQMDDRMLDAICERLKPTLCTPGTCIVREGDPVDEMLFIVRGRLDSCTTNGGRTGFFNT 528
F QMDD++LDAICERL +L T GT IVREGDPV EMLFI+RGRLDS TTNGGR+GFFN+
Sbjct: 553 FSQMDDQLLDAICERLVSSLSTQGTYIVREGDPVTEMLFIIRGRLDSSTTNGGRSGFFNS 732
Query: 529 CRIGSGDFCGEELLPWALDPRPTAVLPSSTRTVRAITEVEAFALIAEDLKFVAAQFRRLH 588
+ GDFCGEELL WAL P+ T LPSSTRTV+A++EVEAFAL AEDLKFVA QFRRLH
Sbjct: 733 IILRPGDFCGEELLSWALLPKSTINLPSSTRTVKALSEVEAFALRAEDLKFVANQFRRLH 912
Query: 589 SKQLRQTFRFYSHQWRTWAACFIQAAWFRYKRMKETNEVKEKENLMM---MSNVKYYGND 645
SK+L+ TFRFYSH WRTWAACFIQAAW RYK+ ++ +E + + ++ + +G+
Sbjct: 913 SKKLQHTFRFYSHHWRTWAACFIQAAWRRYKKRMTMKDLSLRETIPLDEAVAGERKHGDY 1092
Query: 646 DSQYFSAPLQVPKGSSYSMYSGKLVGSLRRGRSMRYGSELDMLGTLRKPIEPDFNDD 702
+ S ++ G+ ++ + + + RRG D + L+KP EPDF+ +
Sbjct: 1093SAGSNSTQTKLNLGA--TILASRFAANTRRGAL----KMKDDMPQLQKPEEPDFSTE 1245
>TC221594 similar to UP|Q9M7Q8 (Q9M7Q8) Cyclic nucleotide-gated
calmodulin-binding ion channel, partial (29%)
Length = 881
Score = 349 bits (896), Expect = 2e-96
Identities = 168/240 (70%), Positives = 201/240 (83%)
Frame = +2
Query: 425 RHDQFRWVATRGVDEEAILRDLPVDLRRDIKRHLCLNLVRQVPLFDQMDDRMLDAICERL 484
++DQ++W+ATRGVDEEA+L+ LPVDLRRDIKRHLCL+LVR VPLFDQMD+RMLDAICERL
Sbjct: 2 KYDQYKWLATRGVDEEALLKGLPVDLRRDIKRHLCLDLVRGVPLFDQMDERMLDAICERL 181
Query: 485 KPTLCTPGTCIVREGDPVDEMLFIVRGRLDSCTTNGGRTGFFNTCRIGSGDFCGEELLPW 544
KP LCT GT +VREGDPV+EMLFI+RG LDS TTNGGR GFFN+CRIG GDFCGEELL W
Sbjct: 182 KPALCTEGTFLVREGDPVNEMLFIIRGHLDSYTTNGGRAGFFNSCRIGPGDFCGEELLTW 361
Query: 545 ALDPRPTAVLPSSTRTVRAITEVEAFALIAEDLKFVAAQFRRLHSKQLRQTFRFYSHQWR 604
ALDPRP+ +LPSSTRTV++I+EVEAFALIAEDLKFVA+QFRRLHSKQ+R FRFYSH WR
Sbjct: 362 ALDPRPSVILPSSTRTVKSISEVEAFALIAEDLKFVASQFRRLHSKQVRHKFRFYSHHWR 541
Query: 605 TWAACFIQAAWFRYKRMKETNEVKEKENLMMMSNVKYYGNDDSQYFSAPLQVPKGSSYSM 664
TWAACFIQAAW R+K+ K+ E++ + + ++ + DS S+ LQ P +S+
Sbjct: 542 TWAACFIQAAWRRHKKRKQVAELRARAINVNIAEPETPTRTDSGLVSS-LQKPAEPDFSV 718
>TC216374 similar to UP|CNG6_ARATH (O82226) Probable cyclic nucleotide-gated
ion channel 6 (AtCNGC6) (Cyclic nucleotide- and
calmodulin-regulated ion channel 6), partial (33%)
Length = 1063
Score = 310 bits (794), Expect = 1e-84
Identities = 162/276 (58%), Positives = 206/276 (73%)
Frame = +1
Query: 427 DQFRWVATRGVDEEAILRDLPVDLRRDIKRHLCLNLVRQVPLFDQMDDRMLDAICERLKP 486
DQ++W+ATRGVDEE +++ LP DLRRDIKRHLCL LVR+VPLF+ MD+R+LDAICERLKP
Sbjct: 1 DQYKWLATRGVDEENLVQSLPKDLRRDIKRHLCLALVRRVPLFESMDERLLDAICERLKP 180
Query: 487 TLCTPGTCIVREGDPVDEMLFIVRGRLDSCTTNGGRTGFFNTCRIGSGDFCGEELLPWAL 546
L T T IVREGDPVDEMLFI+RGRL+S TT+GGR+GFFN + DFCGEELL WAL
Sbjct: 181 CLFTENTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEADFCGEELLTWAL 360
Query: 547 DPRPTAVLPSSTRTVRAITEVEAFALIAEDLKFVAAQFRRLHSKQLRQTFRFYSHQWRTW 606
DP+ + LPSSTRTV+A+ EVEAFAL A++LKFVA+QFRRLHS+Q++ TFRFYS QWRTW
Sbjct: 361 DPKSGSNLPSSTRTVKALMEVEAFALTADELKFVASQFRRLHSRQVQHTFRFYSQQWRTW 540
Query: 607 AACFIQAAWFRYKRMKETNEVKEKENLMMMSNVKYYGNDDSQYFSAPLQVPKGSSYSMYS 666
AACFIQAAW RY + K+ ++++KE+ ++ G+ S F A L K +++++
Sbjct: 541 AACFIQAAWRRYSK-KKIMKLRQKEDESDGAHENVGGS--SYSFGAALLASKFAAHTL-- 705
Query: 667 GKLVGSLRRGRSMRYGSELDMLGTLRKPIEPDFNDD 702
+ R R + E L L+KP EPDF+ D
Sbjct: 706 ----RGVHRNRLAKTARE---LVKLQKPPEPDFSAD 792
>TC216375 similar to UP|CNG6_ARATH (O82226) Probable cyclic nucleotide-gated
ion channel 6 (AtCNGC6) (Cyclic nucleotide- and
calmodulin-regulated ion channel 6), partial (31%)
Length = 896
Score = 278 bits (712), Expect = 5e-75
Identities = 148/253 (58%), Positives = 181/253 (71%), Gaps = 2/253 (0%)
Frame = +2
Query: 452 RDIKRHLCLNLVRQVPLFDQMDDRMLDAICERLKPTLCTPGTCIVREGDPVDEMLFIVRG 511
RDIKRHLCL LVR+VPLF+ MD+R+LDAICERLKP L T T IVREGDPVDEMLFI+RG
Sbjct: 2 RDIKRHLCLALVRRVPLFESMDERLLDAICERLKPCLFTESTYIVREGDPVDEMLFIIRG 181
Query: 512 RLDSCTTNGGRTGFFNTCRIGSGDFCGEELLPWALDPRPTAVLPSSTRTVRAITEVEAFA 571
RL+S TT+GGR+GFFN + DFCGEELL WALDP+ + LPSSTRTV+A+TEVEAFA
Sbjct: 182 RLESVTTDGGRSGFFNRGFLKEADFCGEELLTWALDPKSGSNLPSSTRTVKALTEVEAFA 361
Query: 572 LIAEDLKFVAAQFRRLHSKQLRQTFRFYSHQWRTWAACFIQAAWFRYKRMKETNEVKEKE 631
L AE+LKFVA+QFRRLHS+Q++ TFRFYS QWRTWAACFIQAAW RY + K T E+ +K+
Sbjct: 362 LTAEELKFVASQFRRLHSRQVQHTFRFYSQQWRTWAACFIQAAWRRYSKRK-TMELSQKD 538
Query: 632 NLMMMSNVKYYGNDDSQYFSAPLQVPKGSSY--SMYSGKLVGSLRRGRSMRYGSELDMLG 689
+ GN +S G+++ S ++ + + R R + E L
Sbjct: 539 EPEESEGTR--GNASGSSYSL------GATFLASRFAANALRGVHRNREAKSARE---LV 685
Query: 690 TLRKPIEPDFNDD 702
L+KP EPDF D
Sbjct: 686 KLQKPPEPDFTAD 724
>TC220014 homologue to UP|Q8H6U1 (Q8H6U1) Cyclic nucleotide-gated channel C
(Fragment), partial (41%)
Length = 963
Score = 254 bits (648), Expect = 1e-67
Identities = 132/240 (55%), Positives = 170/240 (70%), Gaps = 2/240 (0%)
Frame = +2
Query: 465 QVPLFDQMDDRMLDAICERLKPTLCTPGTCIVREGDPVDEMLFIVRGRLDSCTTNGGRTG 524
+VP+F+ MD+++LDA+C+RLKP L T +CI REGDPVDEMLFI+RG+L + TTNGGRTG
Sbjct: 5 RVPMFENMDEQLLDAMCDRLKPVLYTEESCIAREGDPVDEMLFIMRGKLLTVTTNGGRTG 184
Query: 525 FFNTCRIGSGDFCGEELLPWALDPRPTAVLPSSTRTVRAITEVEAFALIAEDLKFVAAQF 584
FFN+ + +GDFCGEELL WALDP+ ++ LP STRTV+ ++EVEAFAL A+DLKFVA+QF
Sbjct: 185 FFNSEYLKAGDFCGEELLTWALDPQSSSNLPISTRTVQTLSEVEAFALKADDLKFVASQF 364
Query: 585 RRLHSKQLRQTFRFYSHQWRTWAACFIQAAWFRYKRMKETNEVKEKENLMMMSNVKYYGN 644
RRLHSKQLR TFRFYS QWRTWAACFIQAAW RY + K ++E+EN + + K G+
Sbjct: 365 RRLHSKQLRHTFRFYSQQWRTWAACFIQAAWRRYSKKKLEESLREEENRLQDALAKAGGS 544
Query: 645 DDSQYFSAPLQVPKGSSYSMYSGKLVGSLRRG--RSMRYGSELDMLGTLRKPIEPDFNDD 702
S A + S ++ + LRR R R + + L+KP EPDF +
Sbjct: 545 SPS--LGATIYA------SRFAANALRLLRRNGTRKTRVPERISPM-LLQKPAEPDFTSE 697
>TC207548 similar to UP|CG20_ARATH (Q9LD37) Probable cyclic nucleotide-gated
ion channel 20, chloroplast precursor (Cyclic
nucleotide-binding transporter 1), partial (40%)
Length = 1315
Score = 234 bits (596), Expect = 1e-61
Identities = 143/395 (36%), Positives = 217/395 (54%), Gaps = 15/395 (3%)
Frame = +1
Query: 255 STWYLLSIERQDECWKKACTLQYPHCQYHYLDCQSLSDP---NRNAWLKSSNLSGLCDQN 311
S WYL ++R ++C + AC ++DC D W + N + + +
Sbjct: 16 SGWYLFGLQRVNQCLRNACRDSNITGCSAFIDCGYGPDNVSGRAEVWNNNVNATACLNSS 195
Query: 312 SHFFQFGIFDDAVTLEITSSNFLTKYYYCLWWGLRNLSSSGENLLTSTHVAEINFAVIVA 371
S F++GI+ +AV L I + + KY + L+WG + +S+ N S E+ F + +
Sbjct: 196 SDAFKYGIYVNAVPLTI-ETRVVHKYVFALFWGFQQISTLAGNQTPSYFEWEVLFTMAII 372
Query: 372 ILGLVLFALLIGNMQTYLQSTTIRLEEWRIRRTDTERWMHHRQLPHYLKENVRRHDQFRW 431
LGL+LFALLIGN+Q +LQ+ R E ++R D E+WM HR+LP L+ VR +++ W
Sbjct: 373 GLGLLLFALLIGNIQNFLQALGRRRLEMQLRGRDVEQWMSHRRLPEDLRRRVRHAERYSW 552
Query: 432 VATRGVDEEAILRDLPVDLRRDIKRHLCLNLVRQVPLFDQMDDRMLDAICERLKPTLCTP 491
ATRGV+EE +L ++ DL+ DI+RHL V++V +F MD+ +LDAICERLK
Sbjct: 553 AATRGVNEEILLENMQEDLQTDIRRHL-FKFVKKVRIFALMDEPILDAICERLKQKTYIK 729
Query: 492 GTCIVREGDPVDEMLFIVRGRLDSCTTNGGRTGFFNTCRIGSGDFCGEELLPWALD---- 547
G+ ++ +G V++M+F+VRG L+S +G + GD CGEELL W L+
Sbjct: 730 GSKVLSQGSLVEKMVFVVRGTLESFGDDG------TMVPLSEGDACGEELLTWYLEHSSV 891
Query: 548 ------PRPTAVLPSSTRTVRAITEVEAFALIAEDLKFVAAQFRR-LHSKQLRQTFRFYS 600
R S RTVR +T VEAF+L A DL+ + F R L + ++ R+ S
Sbjct: 892 STDGKKVRVQGQRLLSNRTVRCLTNVEAFSLRAADLEELTILFTRFLRNPHVQGALRYVS 1071
Query: 601 HQWRTWAACFIQAAW-FRYKRMKETNEVKEKENLM 634
WR+ AA IQ AW +R KR+ N + + L+
Sbjct: 1072PYWRSLAANRIQVAWRYRKKRLSRANTSQSDQTLI 1176
>CO984626
Length = 817
Score = 210 bits (534), Expect = 2e-54
Identities = 114/208 (54%), Positives = 143/208 (67%), Gaps = 2/208 (0%)
Frame = -2
Query: 497 REGDPVDEMLFIVRGRLDSCTTNGGRTGFFNTCRIGSGDFCGEELLPWALDPRPTAVLPS 556
REGDPV EMLFI+RG+L + TTNGGRTGFFN+ + +GDFCGEELL WALDP+ ++ LP
Sbjct: 816 REGDPVGEMLFIMRGKLLTVTTNGGRTGFFNSEYLKAGDFCGEELLTWALDPQSSSNLPI 637
Query: 557 STRTVRAITEVEAFALIAEDLKFVAAQFRRLHSKQLRQTFRFYSHQWRTWAACFIQAAWF 616
STRTV+ ++EVEAFAL A+DLKFVA+QFRRLHSKQLR TFRFYS QWRTWAACFIQAAW
Sbjct: 636 STRTVQTLSEVEAFALKADDLKFVASQFRRLHSKQLRHTFRFYSQQWRTWAACFIQAAWR 457
Query: 617 RYKRMKETNEVKEKENLMMMSNVKYYGNDDSQYFSAPLQVPKGSSYSMYSGKLVGSLRRG 676
RY + K ++E+EN + + K G+ S A + S ++ + LRR
Sbjct: 456 RYGKKKLEESLREEENRLQDALSKAGGSSPS--LGATIYA------SRFAANALRLLRRN 301
Query: 677 --RSMRYGSELDMLGTLRKPIEPDFNDD 702
R R + + L+KP EPDF +
Sbjct: 300 GTRKARVPERISPM-LLQKPAEPDFTSE 220
>TC206803 similar to UP|CNG2_ARATH (O65718) Cyclic nucleotide-gated ion
channel 2 (AtCNGC2) (Cyclic nucleotide-and
calmodulin-regulated ion channel 2) (DEFENSE NO DEATH
1), partial (37%)
Length = 1018
Score = 200 bits (508), Expect = 2e-51
Identities = 104/240 (43%), Positives = 148/240 (61%), Gaps = 1/240 (0%)
Frame = +2
Query: 382 IGNMQTYLQSTTIRLEEWRIRRTDTERWMHHRQLPHYLKENVRRHDQFRWVATRGVDEEA 441
IGN+Q +L + + + ++R D E WM RQLP L++ VR ++ RW A G DE
Sbjct: 29 IGNIQVFLHAVMAKKRKMQLRCRDMEWWMRRRQLPSRLRQRVRHFERQRWAAMGGEDEME 208
Query: 442 ILRDLPVDLRRDIKRHLCLNLVRQVPLFDQMDDRMLDAICERLKPTLCTPGTCIVREGDP 501
+++DLP LRRDIKRHLCL+L+R+VPLF MDD +LD IC+R+KP + + I+REGDP
Sbjct: 209 MIKDLPEGLRRDIKRHLCLDLIRKVPLFHNMDDLILDNICDRVKPLVFSKDEKIIREGDP 388
Query: 502 VDEMLFIVRGRLDSCTTNGGRTGFFNTCRIGSGDFCGEELLPWALDPRPTAVLPSSTRTV 561
V M+F+VRGR+ G + + G F G+ELL W L LP+S+ T
Sbjct: 389 VPRMVFVVRGRIK--RNQSLSKGMVASSILEPGGFLGDELLSWCLRRPFIDRLPASSATF 562
Query: 562 RAITEVEAFALIAEDLKFVAAQFR-RLHSKQLRQTFRFYSHQWRTWAACFIQAAWFRYKR 620
+ EAF L A L+++ FR + +++L++T R+YS WRTWAA IQ AW RY++
Sbjct: 563 VCLESSEAFGLDANHLRYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQFAWRRYRQ 742
>BQ297066 homologue to GP|24943196|gb cyclic nucleotide-gated channel C
{Phaseolus vulgaris}, partial (25%)
Length = 454
Score = 120 bits (302), Expect(2) = 1e-47
Identities = 55/82 (67%), Positives = 70/82 (85%)
Frame = +1
Query: 467 PLFDQMDDRMLDAICERLKPTLCTPGTCIVREGDPVDEMLFIVRGRLDSCTTNGGRTGFF 526
P+F++MD+++LDA+C+ LKP L T + IVREGDPVDEMLFI+RG+L + TTNGGRTGFF
Sbjct: 196 PMFEKMDEQLLDAMCDLLKPVLYTEESYIVREGDPVDEMLFIMRGKLLTMTTNGGRTGFF 375
Query: 527 NTCRIGSGDFCGEELLPWALDP 548
N+ + +GDFCGEELL WALDP
Sbjct: 376 NSEYLKAGDFCGEELLTWALDP 441
Score = 88.6 bits (218), Expect(2) = 1e-47
Identities = 38/62 (61%), Positives = 50/62 (80%)
Frame = +2
Query: 402 RRTDTERWMHHRQLPHYLKENVRRHDQFRWVATRGVDEEAILRDLPVDLRRDIKRHLCLN 461
+R D E+WM HR LP L+E +RR++Q+RW TRGVDE+ ++R+LP DLRRDIKRHLCL
Sbjct: 2 KRRDAEQWMSHRLLPDGLRERIRRYEQYRWQETRGVDEDNLIRNLPKDLRRDIKRHLCLA 181
Query: 462 LV 463
L+
Sbjct: 182 LL 187
>TC219373 similar to UP|CG20_ARATH (Q9LD37) Probable cyclic nucleotide-gated
ion channel 20, chloroplast precursor (Cyclic
nucleotide-binding transporter 1), partial (27%)
Length = 1151
Score = 150 bits (378), Expect = 2e-36
Identities = 90/215 (41%), Positives = 129/215 (59%), Gaps = 12/215 (5%)
Frame = +2
Query: 423 VRRHDQFRWVATRGVDEEAILRDLPVDLRRDIKRHLCLNLVRQVPLFDQMDDRMLDAICE 482
VRR +++ W ATRGV+EE ++ +LP DL+RDI+RHL V+++ LF MD+ +LDAICE
Sbjct: 14 VRRAERYNWAATRGVNEEMLMENLPEDLQRDIRRHL-FKFVKKIRLFALMDEPILDAICE 190
Query: 483 RLKPTLCTPGTCIVREGDPVDEMLFIVRGRLDSCTTNGGRTGFFNTCRIGSGDFCGEELL 542
RL+ G+ I+ +G V++M+F+VRG+L+S +G R + GD CGEELL
Sbjct: 191 RLRQKTYIKGSKILSQGGLVEKMVFVVRGKLESIGEDGTR------IPLSEGDSCGEELL 352
Query: 543 PWALDPRPTAV------LPS----STRTVRAITEVEAFALIAEDLKFVAAQFRR-LHSKQ 591
W L+ + LP S RTVR +T VE+F+L A D++ V F R L S
Sbjct: 353 TWYLEHSSVSTDGRKVRLPGQRLVSNRTVRCLTNVESFSLSASDIEEVTILFTRFLRSPC 532
Query: 592 LRQTFRFYSHQWRTWAACFIQAAW-FRYKRMKETN 625
++ R+ S WR+ AA IQ AW +R KR+ N
Sbjct: 533 VQGALRYESPYWRSLAATRIQVAWRYRKKRLSRVN 637
>TC219859 similar to UP|CG17_ARATH (Q8L7Z0) Probable cyclic nucleotide-gated
ion channel 17 (Cyclic nucleotide-and
calmodulin-regulated ion channel 17), partial (22%)
Length = 1008
Score = 140 bits (353), Expect = 2e-33
Identities = 66/138 (47%), Positives = 93/138 (66%), Gaps = 3/138 (2%)
Frame = +2
Query: 255 STWYLLSIERQDECWKKACTLQY-PHCQYHYLDCQSLSDPNRNAWLKSSNLSGLCDQNSH 313
+ WYLLS++R CWK C ++ P + YLDC S + W S+N+ CD ++
Sbjct: 74 AAWYLLSLDRYTTCWKSFCKKEHNPENCFLYLDCSSSNIKLHEIWANSTNVFSSCDPSND 253
Query: 314 F--FQFGIFDDAVTLEITSSNFLTKYYYCLWWGLRNLSSSGENLLTSTHVAEINFAVIVA 371
F++GIF++AV + SSNF+ KY YCLWWGL+ LSS G+NL TST + E +FA+++A
Sbjct: 254 NINFKYGIFENAVKKHVVSSNFIPKYLYCLWWGLQQLSSYGQNLETSTFIGETSFAIVIA 433
Query: 372 ILGLVLFALLIGNMQTYL 389
ILGLVLF+ LIGNMQ ++
Sbjct: 434 ILGLVLFSHLIGNMQVFM 487
Score = 45.4 bits (106), Expect = 8e-05
Identities = 25/54 (46%), Positives = 34/54 (62%)
Frame = +1
Query: 387 TYLQSTTIRLEEWRIRRTDTERWMHHRQLPHYLKENVRRHDQFRWVATRGVDEE 440
TYLQS TIRLEEWR+ +T+R +++ Q++W+ATRGVDEE
Sbjct: 802 TYLQSITIRLEEWRLNE-ETQRSG*XIXTSWRFEKSX*TIGQYKWLATRGVDEE 960
>BG237534 similar to PIR|T52574|T52 cyclic nucleotide and
calmodulin-regulated ion channel [imported] -
Arabidopsis thaliana, partial (17%)
Length = 359
Score = 129 bits (324), Expect = 4e-30
Identities = 61/119 (51%), Positives = 83/119 (69%)
Frame = +3
Query: 393 TIRLEEWRIRRTDTERWMHHRQLPHYLKENVRRHDQFRWVATRGVDEEAILRDLPVDLRR 452
T + + +R + E WM R+LP ++ VR +++ RW ATRGVDE ++++LP LRR
Sbjct: 3 TSKKQAMLLRMRNIEWWMSKRRLPQGFRQRVRNYERMRWAATRGVDECQMIKNLPEGLRR 182
Query: 453 DIKRHLCLNLVRQVPLFDQMDDRMLDAICERLKPTLCTPGTCIVREGDPVDEMLFIVRG 511
DIK HLCL+LVRQVPLF MDD +L+ IC+R+K + T G I +EGDPV MLF+VRG
Sbjct: 183 DIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLVFTKGETITKEGDPVQRMLFVVRG 359
>CO984580
Length = 752
Score = 128 bits (322), Expect = 8e-30
Identities = 62/94 (65%), Positives = 74/94 (77%)
Frame = -1
Query: 539 EELLPWALDPRPTAVLPSSTRTVRAITEVEAFALIAEDLKFVAAQFRRLHSKQLRQTFRF 598
+ELL WALDP ++ LP STRTV I+EVEAFAL A+DLKFVA+QFRRLHSKQL+ FRF
Sbjct: 611 KELLTWALDPNSSSNLPISTRTVETISEVEAFALTADDLKFVASQFRRLHSKQLQHAFRF 432
Query: 599 YSHQWRTWAACFIQAAWFRYKRMKETNEVKEKEN 632
YS QW+TWAA FIQAAW RY + K ++E E+
Sbjct: 431 YSSQWKTWAATFIQAAWRRYWKKKIERSLREAED 330
Score = 68.6 bits (166), Expect = 9e-12
Identities = 33/61 (54%), Positives = 40/61 (65%)
Frame = -2
Query: 495 IVREGDPVDEMLFIVRGRLDSCTTNGGRTGFFNTCRIGSGDFCGEELLPWALDPRPTAVL 554
IVRE DPVDEMLFI+RG+ + TTNGGRTGFFN+ + +GDFC P P +
Sbjct: 742 IVREEDPVDEMLFIMRGKXXTMTTNGGRTGFFNSMFLKAGDFCERNF*HGLWIPTPPQIY 563
Query: 555 P 555
P
Sbjct: 562 P 560
>TC233419 homologue to UP|CNG4_ARATH (Q94AS9) Cyclic nucleotide-gated ion
channel 4 (AtCNGC4) (Cyclic nucleotide-and
calmodulin-regulated ion channel 4) (AtHLM1), partial
(18%)
Length = 394
Score = 70.1 bits (170), Expect(2) = 5e-27
Identities = 36/75 (48%), Positives = 47/75 (62%)
Frame = +1
Query: 468 LFDQMDDRMLDAICERLKPTLCTPGTCIVREGDPVDEMLFIVRGRLDSCTTNGGRTGFFN 527
L+ MDD +L+ IC+R+K + T G I REGDPV MLF+VRG L S R G +
Sbjct: 175 LYFNMDDLVLENICDRVKSLIFTKGETIAREGDPVQRMLFVVRGHLQSSQVL--RDGVKS 348
Query: 528 TCRIGSGDFCGEELL 542
C +G G+F G+ELL
Sbjct: 349 CCMLGPGNFSGDELL 393
Score = 70.1 bits (170), Expect(2) = 5e-27
Identities = 33/57 (57%), Positives = 43/57 (74%)
Frame = +3
Query: 413 RQLPHYLKENVRRHDQFRWVATRGVDEEAILRDLPVDLRRDIKRHLCLNLVRQVPLF 469
R+LP ++ VR +++ RW A RGVDE + ++LP LRRDIK HLCL+LVRQVPLF
Sbjct: 12 RRLPLGFRQRVRNYERQRWAAMRGVDEFEMTKNLPEGLRRDIKYHLCLDLVRQVPLF 182
>BI471105
Length = 392
Score = 101 bits (251), Expect = 1e-21
Identities = 42/86 (48%), Positives = 59/86 (67%), Gaps = 2/86 (2%)
Frame = +1
Query: 257 WYLLSIERQDECWKKACTLQYPHCQYHYLDCQSLSDPNRNAWLKSSNLSGLCDQNSH--F 314
WYLLSIERQ+ CW+ C L+ CQY + DC + D R +W +SN++ LC N++ F
Sbjct: 133 WYLLSIERQEACWRSVCDLEKSFCQYGFFDCHRVKDALRVSWFMASNITNLCSPNANDDF 312
Query: 315 FQFGIFDDAVTLEITSSNFLTKYYYC 340
+QFGI+ DAVT ++TSS F KY++C
Sbjct: 313 YQFGIYADAVTSKVTSSAFFNKYFFC 390
>BM094700 similar to GP|8131898|gb| cyclic nucleotide-binding transporter 1
{Arabidopsis thaliana}, partial (17%)
Length = 427
Score = 79.3 bits (194), Expect(2) = 2e-20
Identities = 38/79 (48%), Positives = 54/79 (68%)
Frame = +1
Query: 368 VIVAILGLVLFALLIGNMQTYLQSTTIRLEEWRIRRTDTERWMHHRQLPHYLKENVRRHD 427
+I+ GL+LFALLIGN+Q +LQ+ R E +RR D E+WM HR L L+ VR+ +
Sbjct: 190 LIIIGSGLLLFALLIGNIQNFLQALERRRLEMTLRRRDVEQWMSHRHLAEDLRRKVRQAE 369
Query: 428 QFRWVATRGVDEEAILRDL 446
++ W ATRGV+EE +L +L
Sbjct: 370 RYNWAATRGVNEEMLLENL 426
Score = 38.9 bits (89), Expect(2) = 2e-20
Identities = 19/54 (35%), Positives = 30/54 (55%)
Frame = +3
Query: 315 FQFGIFDDAVTLEITSSNFLTKYYYCLWWGLRNLSSSGENLLTSTHVAEINFAV 368
F +GI++ AV L N +T+Y Y +WG + +S+ NL S V E+ F +
Sbjct: 33 FPYGIYNKAVNLT-ADHNVITRYVYSSFWGFQQISTLASNLTPSYFVWEVIFTL 191
>BU547719 weakly similar to GP|21703138|gb| AT4g30360/F17I23_300 {Arabidopsis
thaliana}, partial (9%)
Length = 641
Score = 87.8 bits (216), Expect = 1e-17
Identities = 40/97 (41%), Positives = 57/97 (58%), Gaps = 3/97 (3%)
Frame = -1
Query: 255 STWYLLSIERQDECWKKACTLQY-PHCQYHYLDCQSLSDPNRNAWLKSSNLSGLCDQNSH 313
+ WYLLS++R CWK C ++ P + YLDC S + W S+N+ CD ++
Sbjct: 638 AAWYLLSLDRYTTCWKSFCKKEHNPENCFLYLDCSSSNIKLHEIWANSTNVFSSCDPSND 459
Query: 314 F--FQFGIFDDAVTLEITSSNFLTKYYYCLWWGLRNL 348
F++GIF+ AV + SS F+ KY YCLWWGL+ L
Sbjct: 458 DINFKYGIFESAVKKHVVSSKFIPKYLYCLWWGLQQL 348
>CD399837 similar to GP|24943192|gb cyclic nucleotide-gated channel A
{Phaseolus vulgaris}, partial (34%)
Length = 532
Score = 86.7 bits (213), Expect = 3e-17
Identities = 41/55 (74%), Positives = 47/55 (84%)
Frame = -3
Query: 568 EAFALIAEDLKFVAAQFRRLHSKQLRQTFRFYSHQWRTWAACFIQAAWFRYKRMK 622
EAFAL+A+DLKFVA+QFRRLHSKQL+ FRFYS QW+TWAA FIQAA RY + K
Sbjct: 530 EAFALMADDLKFVASQFRRLHSKQLQHAFRFYSSQWKTWAATFIQAAXRRYWKKK 366
>AW759050
Length = 413
Score = 81.6 bits (200), Expect = 1e-15
Identities = 41/49 (83%), Positives = 45/49 (91%)
Frame = +1
Query: 349 SSSGENLLTSTHVAEINFAVIVAILGLVLFALLIGNMQTYLQSTTIRLE 397
SS G+NLLT T VAEINFA+I+A+LGLVLFALLIGNMQTYLQSTT RLE
Sbjct: 265 SSVGQNLLTGTRVAEINFAMIIAVLGLVLFALLIGNMQTYLQSTTTRLE 411
>BM108212 weakly similar to GP|9294159|dbj| cyclic nucleotide and
calmodulin-regulated ion channel protein-like
{Arabidopsis thaliana}, partial (10%)
Length = 455
Score = 80.9 bits (198), Expect = 2e-15
Identities = 48/151 (31%), Positives = 79/151 (51%), Gaps = 5/151 (3%)
Frame = +2
Query: 278 PHCQYHYLDCQSLSDPNR-----NAWLKSSNLSGLCDQNSHFFQFGIFDDAVTLEITSSN 332
P C ++DC N+ + W+ ++ D + F +GI+++AV L I +N
Sbjct: 8 PECM-KFIDCGRGHGNNQPGLRSDQWINNTQAVACLDPSPDGFSYGIYENAVPLTI-ETN 181
Query: 333 FLTKYYYCLWWGLRNLSSSGENLLTSTHVAEINFAVIVAILGLVLFALLIGNMQTYLQST 392
+ KY Y L+WG + +S+ NL S V E+ F + + +GL+LFA+LIGN+Q +LQ+
Sbjct: 182 VVKKYVYSLFWGFQQISTLAGNLXPSYFVWEVLFTMAIIGMGLLLFAILIGNIQNFLQAL 361
Query: 393 TIRLEEWRIRRTDTERWMHHRQLPHYLKENV 423
R E + + WM R LP K+ +
Sbjct: 362 GRRKLEMPL*KPGC*PWMTXRALPQNXKKEI 454
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.326 0.140 0.441
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,297,140
Number of Sequences: 63676
Number of extensions: 561941
Number of successful extensions: 3878
Number of sequences better than 10.0: 58
Number of HSP's better than 10.0 without gapping: 3814
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3850
length of query: 703
length of database: 12,639,632
effective HSP length: 104
effective length of query: 599
effective length of database: 6,017,328
effective search space: 3604379472
effective search space used: 3604379472
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 62 (28.5 bits)
Medicago: description of AC140028.7