TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC140028.4 - phase: 2 /pseudo
         (30 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BU547917                                                               26  4.3
TC213964                                                               25  7.3

>BU547917 
          Length = 571

 Score = 26.2 bits (56), Expect = 4.3
 Identities = 13/29 (44%), Positives = 17/29 (57%)
 Frame = -3

Query: 2   SLQTEVRKREEKEAAEALRRDQELREAKR 30
           +L  E+  REE    EAL++  EL E KR
Sbjct: 425 NLAIEISIREEISGTEALKKASELLEGKR 339


>TC213964 
          Length = 587

 Score = 25.4 bits (54), Expect = 7.3
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +3

Query: 8   RKREEKEAAEALRRDQELREAKR 30
           R REE EAA  +  ++EL++ +R
Sbjct: 237 RYREESEAARMIEEEKELKQMRR 305


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.306    0.120    0.290 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 521,648
Number of Sequences: 63676
Number of extensions: 1501
Number of successful extensions: 20
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of query: 30
length of database: 12,639,632
effective HSP length: 6
effective length of query: 24
effective length of database: 12,257,576
effective search space: 294181824
effective search space used: 294181824
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 53 (25.0 bits)