TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC140025.4 + phase: 0 
         (277 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC207009 similar to UP|Q9FGL9 (Q9FGL9) Polypyrimidine tract-bind...   209  1e-54
TC227165 similar to UP|Q9FGL9 (Q9FGL9) Polypyrimidine tract-bind...   202  2e-52
TC208609 similar to UP|O82472 (O82472) Polypyrimidine tract-bind...   181  2e-46
CD394720                                                              146  1e-35
TC229184 similar to UP|O82472 (O82472) Polypyrimidine tract-bind...   132  2e-31
AW596276                                                              131  3e-31
TC227164 similar to UP|Q9FGL9 (Q9FGL9) Polypyrimidine tract-bind...    91  6e-19
TC205238 similar to UP|Q6ICX4 (Q6ICX4) At1g43190, partial (98%)        85  4e-17
TC205242 similar to UP|Q6ICX4 (Q6ICX4) At1g43190, partial (69%)        47  7e-06
TC206202 UP|Q99367 (Q99367) DNA-directed RNA polymerase  (Fragme...    47  1e-05
TC206203 UP|Q99366 (Q99366) DNA-directed RNA polymerase  (Fragme...    45  5e-05
NP005385 DNA-directed RNA polymerase                                   44  6e-05
TC204718 similar to GB|AAL84954.1|19310435|AY078954 F17H15.1/F17...    43  2e-04
TC207697 similar to UP|O81698 (O81698) Proline-rich protein, par...    42  2e-04
TC204720 similar to GB|AAL84954.1|19310435|AY078954 F17H15.1/F17...    42  4e-04
TC206241 similar to UP|Q7X9B2 (Q7X9B2) 9/13 hydroperoxide lyase,...    39  0.002
TC209975 weakly similar to UP|Q7T9Y7 (Q7T9Y7) Odv-e66, partial (9%)    39  0.003
TC206394 similar to UP|Q9LDK9 (Q9LDK9) Beta-adaptin-like protein...    39  0.003
TC219461 homologue to UP|Q9AR19 (Q9AR19) Histone acetyltransfera...    38  0.004
CO984821                                                               37  0.007

>TC207009 similar to UP|Q9FGL9 (Q9FGL9) Polypyrimidine tract-binding RNA
            transport protein-like, partial (80%)
          Length = 1621

 Score =  209 bits (531), Expect = 1e-54
 Identities = 117/221 (52%), Positives = 141/221 (62%), Gaps = 4/221 (1%)
 Frame = +2

Query: 2    LPVNHSAIEGAAQPAIGPDGKRIETESNVLLASIENMQYAVTVDVINTVFSAFGTVQKIA 61
            LPV  SA+EG+ Q  +G DGKR+E ESNVLLASIENMQYAVT+DV++ VFSAFG VQKIA
Sbjct: 794  LPVAPSAVEGSGQAMVGLDGKRLEAESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIA 973

Query: 62   MFEKNGQTQALIQYPDVTTAAAAREALEGHCIYDGGYCKLHLSYSRHTDLNVKAFSDKSR 121
            MF+KNG  QALIQ+PD  TA  A+EALEGHCIYDGG+CKLH+SYSRHTDL++K  +D+SR
Sbjct: 974  MFDKNGGLQALIQFPDTQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSR 1153

Query: 122  DYTVPLVPA----PVWQNPQAAPMYPTNSPAYQTQVPGGSPAYQTQVPGGQVPSWDLTQH 177
            DYT+P  PA    P     Q+ PM       Y     G    + T  P   V S  +  H
Sbjct: 1154 DYTIPNTPAVNVQPSILGQQSVPMMGPPQQPYN----GSQAGWGTAPPATTVQSMPMQMH 1321

Query: 178  AVRPGYVPVPGAYPGQTGAFPTMPSYGSAAMPTASSPLAQS 218
                 Y+P  G  P Q       PSY + A PT + P  +S
Sbjct: 1322 --NNVYMP-SGTMPQQMAPGMQFPSY-NTAQPTTTLPSYRS 1432



 Score = 89.7 bits (221), Expect = 1e-18
 Identities = 51/112 (45%), Positives = 69/112 (61%), Gaps = 7/112 (6%)
 Frame = +2

Query: 25  ETESNVLLASIENMQYA-VTVDVINTVFSAFGTVQKIAMFEKNGQTQALIQYPDVTTAAA 83
           +   NVLL +IE      V++DV++ VFSAFG V KI  FEK    QAL+Q+ D  TA +
Sbjct: 464 DVPGNVLLVTIEGADARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDAETATS 643

Query: 84  AREALEGHCI------YDGGYCKLHLSYSRHTDLNVKAFSDKSRDYTVPLVP 129
           A++AL+G  I         G C L ++YS H+DL+VK  S +SRDYT P +P
Sbjct: 644 AKDALDGRSIPRYLLPEHMGPCTLRITYSGHSDLSVKFQSHRSRDYTNPYLP 799


>TC227165 similar to UP|Q9FGL9 (Q9FGL9) Polypyrimidine tract-binding RNA
           transport protein-like, partial (31%)
          Length = 1123

 Score =  202 bits (513), Expect = 2e-52
 Identities = 112/213 (52%), Positives = 137/213 (63%)
 Frame = +2

Query: 2   LPVNHSAIEGAAQPAIGPDGKRIETESNVLLASIENMQYAVTVDVINTVFSAFGTVQKIA 61
           LPV  SA+EG+ QP +G DGKR+E ESNVLLASIENMQY VT+DV++ VFSAFG VQKIA
Sbjct: 113 LPVAQSAMEGSGQPMVGLDGKRLEAESNVLLASIENMQYTVTLDVLHMVFSAFGPVQKIA 292

Query: 62  MFEKNGQTQALIQYPDVTTAAAAREALEGHCIYDGGYCKLHLSYSRHTDLNVKAFSDKSR 121
           MF+KNG  QALIQYPD+ TA  A+E LEGHCIYDGG+CKLH+SYSRHTDL++K  +++SR
Sbjct: 293 MFDKNGGLQALIQYPDIQTAVVAKETLEGHCIYDGGFCKLHISYSRHTDLSIKVNNERSR 472

Query: 122 DYTVPLVPAPVWQNPQAAPMYPTNSPAYQTQVPGGSPAYQTQVPGGQVPSWDLTQHAVRP 181
           DYT+P VP PV     A P      P   T   G  P +        V    L  H+ + 
Sbjct: 473 DYTIPNVPPPV---VNAQPSILGQHPVPMT---GPPPQHYNGAQYAPVTEQTLMSHS-QA 631

Query: 182 GYVPVPGAYPGQTGAFPTMPSYGSAAMPTASSP 214
           G+   P     Q    P  P   SA +P  ++P
Sbjct: 632 GWGTGPPQSMQQMHNHPYTP---SAMVPPQTTP 721


>TC208609 similar to UP|O82472 (O82472) Polypyrimidine tract-binding protein
           homolog, partial (5%)
          Length = 853

 Score =  181 bits (460), Expect = 2e-46
 Identities = 103/183 (56%), Positives = 112/183 (60%), Gaps = 20/183 (10%)
 Frame = +2

Query: 115 AFSDKSRDYTVP-------LVPAPVWQNPQAAPMYPTNSPAYQTQVPGGSPAYQTQVPGG 167
           AFSDKSRDYTVP         PA  WQNPQAAPMYP           G +PAY TQVPGG
Sbjct: 185 AFSDKSRDYTVPDPSLLAAQGPATAWQNPQAAPMYP-----------GSAPAYHTQVPGG 331

Query: 168 QVPSWDLTQHAVRPGYVPVPGAYPGQTGAFPTMPSYG-SAAMPTASSPLAQSS------- 219
           QVP+WD    AVRP YV  PG +  Q+GA P MP+Y  +AAMP ASSP AQSS       
Sbjct: 332 QVPAWDPNLQAVRPSYVSAPGTFHVQSGAAPPMPAYAPAAAMPAASSPHAQSSPMAHNAN 511

Query: 220 -----HPGAPHNVNLQPSGGSTSGPGSSPHMQQNLGAQGMVRPGAPPNVRPGGASPSGQH 274
                 P  P N NLQ SG S S PGSSP MQ +  AQG+V+    PN RPGGASP GQH
Sbjct: 512 PMGIAQPRVPPNANLQSSGASLSAPGSSPLMQTSQAAQGLVQ----PNARPGGASPPGQH 679

Query: 275 YYG 277
           YYG
Sbjct: 680 YYG 688


>CD394720 
          Length = 560

 Score =  146 bits (368), Expect = 1e-35
 Identities = 80/132 (60%), Positives = 86/132 (64%), Gaps = 13/132 (9%)
 Frame = -1

Query: 159 AYQTQVPGGQVPSWDLTQHAVRPGYVPVPGAYPGQTGAFPTMPSYGSA-AMPTASSPLAQ 217
           AY TQVPGGQVPSWD +  AVRP Y   PG +P QTGA P MPSY  A AMP ASSP AQ
Sbjct: 560 AYHTQVPGGQVPSWDPSLQAVRPSYASAPGTFPVQTGAAPPMPSYAPASAMPVASSPHAQ 381

Query: 218 SS------------HPGAPHNVNLQPSGGSTSGPGSSPHMQQNLGAQGMVRPGAPPNVRP 265
           SS              G P NVNLQ SG S S PGSSP MQ +  AQG+++    PN RP
Sbjct: 380 SSPMAHNANPMGIAQLGVPPNVNLQSSGASLSAPGSSPLMQTSQAAQGLLQ----PNARP 213

Query: 266 GGASPSGQHYYG 277
           GGASPSGQHYYG
Sbjct: 212 GGASPSGQHYYG 177


>TC229184 similar to UP|O82472 (O82472) Polypyrimidine tract-binding protein
           homolog, partial (76%)
          Length = 1109

 Score =  132 bits (332), Expect = 2e-31
 Identities = 65/78 (83%), Positives = 73/78 (93%)
 Frame = +3

Query: 1   MLPVNHSAIEGAAQPAIGPDGKRIETESNVLLASIENMQYAVTVDVINTVFSAFGTVQKI 60
           MLPVN++AIEGA Q A+GPDGKR E +SNVLLASIENMQYAVTVDV++TVFSAFGTVQKI
Sbjct: 774 MLPVNYTAIEGAVQTAVGPDGKRKEPDSNVLLASIENMQYAVTVDVLHTVFSAFGTVQKI 953

Query: 61  AMFEKNGQTQALIQYPDV 78
           A+FEKNGQTQALIQYP +
Sbjct: 954 AIFEKNGQTQALIQYPGI 1007



 Score =  100 bits (249), Expect = 7e-22
 Identities = 56/108 (51%), Positives = 73/108 (66%), Gaps = 7/108 (6%)
 Frame = +3

Query: 29  NVLLASIENMQYA-VTVDVINTVFSAFGTVQKIAMFEKNGQTQALIQYPDVTTAAAAREA 87
           NVLL +IE ++   V++DVI+ VFSAFG V KIA FEK    QALIQ+ D  TA++AR+A
Sbjct: 459 NVLLVTIEGVEAGDVSIDVIHLVFSAFGFVHKIATFEKTAGFQALIQFTDAETASSARDA 638

Query: 88  LEGHCI------YDGGYCKLHLSYSRHTDLNVKAFSDKSRDYTVPLVP 129
           L+G  I         G C L +SYS H DLN+K  S++SRDYT P++P
Sbjct: 639 LDGRSIPRYLLPAHVGSCNLRISYSAHKDLNIKFQSNRSRDYTNPMLP 782



 Score = 62.0 bits (149), Expect = 3e-10
 Identities = 28/37 (75%), Positives = 31/37 (83%)
 Frame = +1

Query: 69   TQALIQYPDVTTAAAAREALEGHCIYDGGYCKLHLSY 105
            T  LI +  + TA+AAREALEGHCIYDGGYCKLHLSY
Sbjct: 997  TLVLIIFNYIITASAAREALEGHCIYDGGYCKLHLSY 1107


>AW596276 
          Length = 202

 Score =  131 bits (330), Expect = 3e-31
 Identities = 61/67 (91%), Positives = 64/67 (95%)
 Frame = +2

Query: 60  IAMFEKNGQTQALIQYPDVTTAAAAREALEGHCIYDGGYCKLHLSYSRHTDLNVKAFSDK 119
           IA+FEKNGQTQALIQYPD+ TA+AA EALEGHCIYDGGYCKLHLSYSRHTDLNVKA SDK
Sbjct: 2   IAIFEKNGQTQALIQYPDIITASAATEALEGHCIYDGGYCKLHLSYSRHTDLNVKALSDK 181

Query: 120 SRDYTVP 126
           SRDYTVP
Sbjct: 182 SRDYTVP 202


>TC227164 similar to UP|Q9FGL9 (Q9FGL9) Polypyrimidine tract-binding RNA
           transport protein-like, partial (11%)
          Length = 409

 Score = 90.9 bits (224), Expect = 6e-19
 Identities = 54/130 (41%), Positives = 68/130 (51%), Gaps = 10/130 (7%)
 Frame = +2

Query: 84  AREALEGHCIYDGGYCKLHLSYSRHTDLNVKAFSDKSRDYTVPLVPAPVWQN-------- 135
           A+EALEGHCIYDGG+CKLH+SYSRH+DL++K  +D+SRDYT+P VP PV           
Sbjct: 2   AKEALEGHCIYDGGFCKLHISYSRHSDLSIKVNNDRSRDYTIPNVPPPVVNAQPSILGQH 181

Query: 136 --PQAAPMYPTNSPAYQTQVPGGSPAYQTQVPGGQVPSWDLTQHAVRPGYVPVPGAYPGQ 193
             P   P     + A    V   +   Q+Q   G  PS  + Q    P Y P     P Q
Sbjct: 182 PVPMTGPPPQQYNGAQYASVTEQTLMPQSQAGWGTAPSQSMLQMHNNP-YTP-SAMVPPQ 355

Query: 194 TGAFPTMPSY 203
           T      PS+
Sbjct: 356 TAPGMQFPSH 385


>TC205238 similar to UP|Q6ICX4 (Q6ICX4) At1g43190, partial (98%)
          Length = 1560

 Score = 84.7 bits (208), Expect = 4e-17
 Identities = 44/107 (41%), Positives = 66/107 (61%)
 Frame = +1

Query: 23  RIETESNVLLASIENMQYAVTVDVINTVFSAFGTVQKIAMFEKNGQTQALIQYPDVTTAA 82
           R +  + +LL ++ +M Y +T DV++ VFS  G V+KI  F+K+   QALIQY    +A 
Sbjct: 340 REDEPNRILLVTVHHMLYPITADVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQSRQSAV 519

Query: 83  AAREALEGHCIYDGGYCKLHLSYSRHTDLNVKAFSDKSRDYTVPLVP 129
            AR  L+G  IYD G C+L + +S   +L V   +D+SRD+T P +P
Sbjct: 520 TARSTLQGRNIYD-GCCQLDIQFSNLDELQVNYNNDRSRDFTNPNLP 657



 Score = 30.0 bits (66), Expect = 1.2
 Identities = 17/47 (36%), Positives = 26/47 (55%)
 Frame = +1

Query: 42   VTVDVINTVFSAFGTVQKIAMFEKNGQTQALIQYPDVTTAAAAREAL 88
            +T + I ++    GT+    +FE NG+ QAL+Q+    T   A EAL
Sbjct: 1183 ITEEEIVSLLEEHGTIVNSKVFEMNGKKQALVQF---ETEEQATEAL 1314


>TC205242 similar to UP|Q6ICX4 (Q6ICX4) At1g43190, partial (69%)
          Length = 1451

 Score = 47.4 bits (111), Expect = 7e-06
 Identities = 26/59 (44%), Positives = 36/59 (60%)
 Frame = +3

Query: 63  FEKNGQTQALIQYPDVTTAAAAREALEGHCIYDGGYCKLHLSYSRHTDLNVKAFSDKSR 121
           F+K+   QALIQY    +A AAR  L+G  IYD G C+L + +S   +L V   +D+SR
Sbjct: 3   FQKSAGFQALIQYQSRQSAVAARSTLQGRNIYD-GCCQLDIQFSNLDELQVNYNNDRSR 176



 Score = 29.3 bits (64), Expect = 2.0
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = +2

Query: 42  VTVDVINTVFSAFGTVQKIAMFEKNGQTQALIQYPDVTTAAAA 84
           +T + I ++    GT+    +FE NG+ QAL+Q+ +   A  A
Sbjct: 746 ITEEEIVSLVEEHGTIVNSKVFEMNGKKQALVQFGNEEQATEA 874


>TC206202 UP|Q99367 (Q99367) DNA-directed RNA polymerase  (Fragment) , complete
          Length = 1826

 Score = 46.6 bits (109), Expect = 1e-05
 Identities = 49/171 (28%), Positives = 59/171 (33%), Gaps = 34/171 (19%)
 Frame = +3

Query: 139  APMYPTNSPAYQTQVPGGSPAYQTQVPGGQVPSWDLTQHA---VRPGYVPVPGAY-PGQT 194
            +P Y   SPAY    P  SP   +  P    PS+  T  +     P Y P   AY P   
Sbjct: 915  SPAYSPTSPAYSPTSPSYSPTSPSYSPTS--PSYSPTSPSYSPTSPSYSPTSPAYSPTSP 1088

Query: 195  GAFPTMPSYGSAA---MPTA------------------SSPLAQSSHPGAPHNVNLQPSG 233
            G  PT PSY   +    PT+                  SSP    S P +P + N  P+ 
Sbjct: 1089 GYSPTSPSYSPTSPSYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPSSPYSPTSPNYSPTS 1268

Query: 234  G---------STSGPGSSPHMQQNLGAQGMVRPGAPPNVRPGGASPSGQHY 275
                      S S P  SP    N G      P +P      G SPS   Y
Sbjct: 1269 PSYSPTSPSYSPSSPTYSPSSPYNSGVSPDYSPSSPQFSPSTGYSPSQPGY 1421



 Score = 44.7 bits (104), Expect = 5e-05
 Identities = 36/105 (34%), Positives = 43/105 (40%), Gaps = 4/105 (3%)
 Frame = +3

Query: 143 PTNSPAYQTQVPG---GSPAYQTQVPGGQVPSWDLTQHAVRPGYVPVPGAY-PGQTGAFP 198
           PT+SP Y    PG    SP Y    PG    S   +     PGY P    Y P   G  P
Sbjct: 612 PTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYS--PTSPGYSPTSPTYSPSSPGYSP 785

Query: 199 TMPSYGSAAMPTASSPLAQSSHPGAPHNVNLQPSGGSTSGPGSSP 243
           T P+Y   +   + SP + S  P +P      PS   TS P  SP
Sbjct: 786 TSPAYSPTS--PSYSPTSPSYSPTSPSYSPTSPSYSPTS-PSYSP 911



 Score = 40.8 bits (94), Expect = 7e-04
 Identities = 47/171 (27%), Positives = 69/171 (39%), Gaps = 11/171 (6%)
 Frame = +3

Query: 116 FSDKSRDYTVPLVPAPVWQNPQ---AAPMYPTNSPAYQTQVPGGSPAYQTQVPGGQVPSW 172
           +S  S  Y+ P  PA    +P     +P Y   SP+Y    P  SP   +  P    P++
Sbjct: 756 YSPSSPGYS-PTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS--PAY 926

Query: 173 DLTQHA---VRPGYVPVPGAY-PGQTGAFPTMPSYGSAAMPTAS--SPLAQSSHPG-APH 225
             T  A     P Y P   +Y P      PT PSY S   P+ S  SP    + PG +P 
Sbjct: 927 SPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTSPAYSPTSPGYSPT 1103

Query: 226 NVNLQPSGGSTSGPGSSPHMQQNLGAQGMVRPGAPPNVRPGGA-SPSGQHY 275
           + +  P+  S S    S + Q    +  +    + P + P    SP+  +Y
Sbjct: 1104SPSYSPTSPSYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPSSPYSPTSPNY 1256



 Score = 40.4 bits (93), Expect = 9e-04
 Identities = 38/126 (30%), Positives = 47/126 (37%), Gaps = 3/126 (2%)
 Frame = +3

Query: 139 APMYPTNSPAYQTQVPGGSPAYQTQVPGGQVPSWDLTQHAVRPGYVPVPGAY-PGQTGAF 197
           +P Y  +SP Y    P  SP   +  P    PS+  T     P Y P   +Y P      
Sbjct: 747 SPTYSPSSPGYSPTSPAYSPTSPSYSPTS--PSYSPTS----PSYSPTSPSYSPTSPSYS 908

Query: 198 PTMPSYGSAAMPTASSPLAQSSHPGAPHNVNLQPSGGSTSGPGS--SPHMQQNLGAQGMV 255
           PT P+Y   +   A SP + S  P +P      PS   TS   S  SP       A    
Sbjct: 909 PTSPAYSPTS--PAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPT 1082

Query: 256 RPGAPP 261
            PG  P
Sbjct: 1083SPGYSP 1100



 Score = 33.9 bits (76), Expect = 0.083
 Identities = 20/69 (28%), Positives = 27/69 (38%)
 Frame = +3

Query: 139  APMYPTNSPAYQTQVPGGSPAYQTQVPGGQVPSWDLTQHAVRPGYVPVPGAYPGQTGAFP 198
            +P Y   SP+Y    P  SP+  T  P     S       V P Y P    +   TG  P
Sbjct: 1245 SPNYSPTSPSYSPTSPSYSPSSPTYSPSSPYNS------GVSPDYSPSSPQFSPSTGYSP 1406

Query: 199  TMPSYGSAA 207
            + P Y  ++
Sbjct: 1407 SQPGYSPSS 1433



 Score = 27.7 bits (60), Expect = 5.9
 Identities = 27/98 (27%), Positives = 34/98 (34%), Gaps = 3/98 (3%)
 Frame = +3

Query: 181 PGYVPVPGAYPGQTGAFPTMPSYGSAAMPTASSPLAQSSHPG-APHNVNLQPS--GGSTS 237
           P Y+  P      T      P  G  A    SSP    S PG +P +    P+  G S +
Sbjct: 525 PSYLLSPNLRLSPTSDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPT 704

Query: 238 GPGSSPHMQQNLGAQGMVRPGAPPNVRPGGASPSGQHY 275
            PG SP             P +P      G SP+   Y
Sbjct: 705 SPGYSPTSPGYSPTSPTYSPSSP------GYSPTSPAY 800


>TC206203 UP|Q99366 (Q99366) DNA-directed RNA polymerase  (Fragment) , partial
            (96%)
          Length = 2604

 Score = 44.7 bits (104), Expect = 5e-05
 Identities = 36/105 (34%), Positives = 42/105 (39%), Gaps = 4/105 (3%)
 Frame = +1

Query: 143  PTNSPAYQTQVPG---GSPAYQTQVPGGQVPSWDLTQHAVRPGYVPVPGAY-PGQTGAFP 198
            PT+SP Y    PG    SP Y    PG    S         PGY P    Y P   G  P
Sbjct: 1090 PTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTS---------PGYSPTSPTYSPSSPGYSP 1242

Query: 199  TMPSYGSAAMPTASSPLAQSSHPGAPHNVNLQPSGGSTSGPGSSP 243
            T P+Y   +   + SP + S  P +P      PS   TS P  SP
Sbjct: 1243 TSPAYSPTS--PSYSPTSPSYSPTSPSYSPTSPSYSPTS-PSYSP 1368



 Score = 44.3 bits (103), Expect = 6e-05
 Identities = 40/140 (28%), Positives = 56/140 (39%), Gaps = 3/140 (2%)
 Frame = +1

Query: 139  APMYPTNSPAYQTQVPGGSPAYQTQVPGGQVPSWDLTQHAVRPGYVPVPGAYPGQTGAF- 197
            +P Y   SPAY    PG SP           PS+  T     P Y P   +Y  Q+  + 
Sbjct: 1519 SPSYSPTSPAYSPTSPGYSPT---------SPSYSPTS----PSYSPTSPSYNPQSAKYS 1659

Query: 198  PTMPSYGSAAMPTASSPLAQSSHPGAPHNVNLQPSGG--STSGPGSSPHMQQNLGAQGMV 255
            P++    S+   + SSP + +S   +P + +  P+    S S P  SP    N G     
Sbjct: 1660 PSLAYSPSSPRLSPSSPYSPTSPNYSPTSPSYSPTSPSYSPSSPTYSPSSPYNSGVSPDY 1839

Query: 256  RPGAPPNVRPGGASPSGQHY 275
             P +P      G SPS   Y
Sbjct: 1840 SPSSPQFSPSTGYSPSQPGY 1899



 Score = 42.0 bits (97), Expect = 3e-04
 Identities = 37/114 (32%), Positives = 49/114 (42%), Gaps = 9/114 (7%)
 Frame = +1

Query: 139  APMYPTNSPAYQTQVPGGSPAYQTQVPGGQVPSWDLTQHA---VRPGYVPVPGAYPGQTG 195
            +P Y   SP+Y    P  SP   +  P    PS+  T  +     P Y P   AY   + 
Sbjct: 1246 SPAYSPTSPSYSPTSPSYSPTSPSYSPTS--PSYSPTSPSYSPTSPAYSPTSPAYSPTSP 1419

Query: 196  AF-PTMPSYGSAA---MPTAS--SPLAQSSHPGAPHNVNLQPSGGSTSGPGSSP 243
            A+ PT PSY   +    PT+   SP + S  P +P      P+   TS PG SP
Sbjct: 1420 AYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTS-PGYSP 1578



 Score = 40.8 bits (94), Expect = 7e-04
 Identities = 38/129 (29%), Positives = 50/129 (38%), Gaps = 6/129 (4%)
 Frame = +1

Query: 139  APMYPTNSPAYQTQVPGGSPAYQTQVPGGQVPSWDLTQHA---VRPGYVPVPGAYPGQTG 195
            +P Y  +SP Y    P  SP   +  P    PS+  T  +     P Y P   +Y   + 
Sbjct: 1204 SPTYSPSSPGYSPTSPAYSPTSPSYSPTS--PSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1377

Query: 196  AF-PTMPSYGSAAMPTASSPLAQSSHPGAPHNVNLQPSGGSTSGPGS--SPHMQQNLGAQ 252
            A+ PT P+Y   +   A SP + S  P +P      PS   TS   S  SP       A 
Sbjct: 1378 AYSPTSPAYSPTS--PAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAY 1551

Query: 253  GMVRPGAPP 261
                PG  P
Sbjct: 1552 SPTSPGYSP 1578



 Score = 33.9 bits (76), Expect = 0.083
 Identities = 20/69 (28%), Positives = 27/69 (38%)
 Frame = +1

Query: 139  APMYPTNSPAYQTQVPGGSPAYQTQVPGGQVPSWDLTQHAVRPGYVPVPGAYPGQTGAFP 198
            +P Y   SP+Y    P  SP+  T  P     S       V P Y P    +   TG  P
Sbjct: 1723 SPNYSPTSPSYSPTSPSYSPSSPTYSPSSPYNS------GVSPDYSPSSPQFSPSTGYSP 1884

Query: 199  TMPSYGSAA 207
            + P Y  ++
Sbjct: 1885 SQPGYSPSS 1911


>NP005385 DNA-directed RNA polymerase
          Length = 2934

 Score = 44.3 bits (103), Expect = 6e-05
 Identities = 54/196 (27%), Positives = 70/196 (35%), Gaps = 36/196 (18%)
 Frame = +1

Query: 116  FSDKSRDYTVPLVPAPVWQNPQ---AAPMYPTNSPAYQTQVPGGSPAYQTQVPGGQV--- 169
            +S  S  Y+ P  PA    +P     +P Y   SPAY +  P  SP   +  P       
Sbjct: 2296 YSPSSPGYS-PTSPAYSPTSPSYSPTSPAYSPTSPAYSSTSPAYSPTSPSYSPTSPAYSP 2472

Query: 170  --PSWDLTQHA---VRPGYVPVPGAYPGQTGAF-PTMPSYGSAA---MPT---------- 210
              PS+ LT  +     P Y P   +Y   + A+ PT PSY   +    PT          
Sbjct: 2473 TSPSYSLTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPSYSPTSPSYSPTSPSYNPQSAK 2652

Query: 211  -----ASSPLAQSSHPGAPHNVNLQPSGGST------SGPGSSPHMQQNLGAQGMVRPGA 259
                 A SP +    P +P+     PS   T      S P  SP    N G      P +
Sbjct: 2653 YSPSLAYSPSSPRLSPTSPNYSPTSPSYSPTSPSYSPSSPTYSPSSPYNSGVSPDYSPTS 2832

Query: 260  PPNVRPGGASPSGQHY 275
            P      G SPS   Y
Sbjct: 2833 PQFSPSAGYSPSQPGY 2880



 Score = 39.7 bits (91), Expect = 0.002
 Identities = 37/110 (33%), Positives = 43/110 (38%), Gaps = 5/110 (4%)
 Frame = +1

Query: 139  APMYPTNSPAYQTQVPGGSPAYQTQVPGGQVPSWDLTQHAVRPGYVPV-PGAYPGQTGAF 197
            +P Y   SP+Y    P  SP   +  P     S  L      P   P  P   P      
Sbjct: 2560 SPAYSPTSPSYSPTSPSYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPTSPNYSPTSPSYS 2739

Query: 198  PTMPSYGSAAMPT--ASSPLAQSSHPG-APHNVNLQPSGG-STSGPGSSP 243
            PT PSY S + PT   SSP      P  +P +    PS G S S PG SP
Sbjct: 2740 PTSPSY-SPSSPTYSPSSPYNSGVSPDYSPTSPQFSPSAGYSPSQPGYSP 2886



 Score = 38.9 bits (89), Expect = 0.003
 Identities = 37/115 (32%), Positives = 48/115 (41%), Gaps = 10/115 (8%)
 Frame = +1

Query: 139  APMYPTNSPAYQTQVPGGSPAYQTQVPGGQVPSWDLTQHA---VRPGYVPVPGAYPGQTG 195
            +P Y  +SP Y    P  SP   +  P    P++  T  A     P Y P   +Y   + 
Sbjct: 2287 SPTYSPSSPGYSPTSPAYSPTSPSYSPTS--PAYSPTSPAYSSTSPAYSPTSPSYSPTSP 2460

Query: 196  AF-PTMPSYGSAAMPTAS------SPLAQSSHPGAPHNVNLQPSGGSTSGPGSSP 243
            A+ PT PSY S   P+ S      SP + S  P +P      PS   TS P  SP
Sbjct: 2461 AYSPTSPSY-SLTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPSYSPTS-PSYSP 2619



 Score = 33.9 bits (76), Expect = 0.083
 Identities = 24/96 (25%), Positives = 39/96 (40%), Gaps = 3/96 (3%)
 Frame = +1

Query: 115  AFSDKSRDYTVPLVPAPVWQNPQAAPMYPT---NSPAYQTQVPGGSPAYQTQVPGGQVPS 171
            +++ +S  Y+  L  +P   +P+ +P  P     SP+Y    P  SP+  T  P     S
Sbjct: 2629 SYNPQSAKYSPSLAYSP--SSPRLSPTSPNYSPTSPSYSPTSPSYSPSSPTYSPSSPYNS 2802

Query: 172  WDLTQHAVRPGYVPVPGAYPGQTGAFPTMPSYGSAA 207
                   V P Y P    +    G  P+ P Y  ++
Sbjct: 2803 ------GVSPDYSPTSPQFSPSAGYSPSQPGYSPSS 2892


>TC204718 similar to GB|AAL84954.1|19310435|AY078954 F17H15.1/F17H15.1
           {Arabidopsis thaliana;} , partial (5%)
          Length = 1417

 Score = 42.7 bits (99), Expect = 2e-04
 Identities = 47/171 (27%), Positives = 58/171 (33%), Gaps = 13/171 (7%)
 Frame = +2

Query: 120 SRDYTVPLVPAPVWQN--PQAAPMY---PTNSPAYQTQVPGGSPAY-------QTQVPGG 167
           S+ Y     P+P   N  PQA P Y   PT+ PA     P     Y       QTQ P G
Sbjct: 506 SQGYGTGQQPSPNAANYAPQAQPGYGVPPTSQPATYGSQPPAQSGYGSGYGPPQTQKPSG 685

Query: 168 QVPSWDLTQHAVRPGYVPVPGAYPGQTGAFPTMPSYGSAAMPTASSPLAQSSHPGAPHNV 227
                                          T P YG +  P  +    QS H  + +  
Sbjct: 686 -------------------------------TPPVYGQSQSPNTAGGYGQSGHLQSGYPP 772

Query: 228 NLQPSGGSTSGPGSSPHMQQNLGAQGMVRPG-APPNVRPGGASPSGQHYYG 277
           +  P  G  + P S        G  G V+PG  PP+   GGA   GQ  YG
Sbjct: 773 SQPPPSGGYAQPESGSQKAPPSGYGGAVQPGYGPPSY--GGAPAGGQPGYG 919



 Score = 37.4 bits (85), Expect = 0.007
 Identities = 43/138 (31%), Positives = 54/138 (38%), Gaps = 9/138 (6%)
 Frame = +2

Query: 129 PAPVWQNPQAAPMYPTNSPAYQTQVPGGSPAY--QTQVP---GGQVPSWDLTQHAVRPGY 183
           PA     P A   Y +     QTQ P G+P    Q+Q P   GG   S  L Q    P  
Sbjct: 602 PATYGSQPPAQSGYGSGYGPPQTQKPSGTPPVYGQSQSPNTAGGYGQSGHL-QSGYPPSQ 778

Query: 184 VPVPGAY-PGQTGAFPTMPS-YGSAAMPTASSPLAQSSHPGAPHNVNLQPSGGSTSGPGS 241
            P  G Y   ++G+    PS YG A  P    P    S+ GAP         G   G G 
Sbjct: 779 PPPSGGYAQPESGSQKAPPSGYGGAVQPGYGPP----SYGGAP--------AGGQPGYGQ 922

Query: 242 SP--HMQQNLGAQGMVRP 257
           +P  +   + GA G  +P
Sbjct: 923 APPSYSNSSYGAAGYAQP 976


>TC207697 similar to UP|O81698 (O81698) Proline-rich protein, partial (91%)
          Length = 1487

 Score = 42.4 bits (98), Expect = 2e-04
 Identities = 47/176 (26%), Positives = 64/176 (35%), Gaps = 37/176 (21%)
 Frame = +1

Query: 135 NPQAAPMYPTNSPAY------QTQVPGGSPAYQTQVP-GGQVPSWDLTQHAVRPGYVPVP 187
           N Q AP+ P +  A       QTQ+P      Q  VP    VP+       +    +P+P
Sbjct: 376 NIQPAPLLPGHGGAQDQAGVSQTQIPLRKHQNQPSVPISSAVPAMSHQSQPMAAHSLPMP 555

Query: 188 GAYPG------------QTGAFPT--MPSYGSAAMPTASS----PLAQSSHPGA--PHNV 227
             + G            Q+   P   +PS     M TASS    PL  S  P    P   
Sbjct: 556 QQHKGHPTPQMAPVSLPQSSQLPNVPLPSLHQTQMATASSQLQQPLQTSGFPPLQPPLPP 735

Query: 228 NLQPSGGSTSGPGSSPHMQQNLG----------AQGMVRPGAPPNVRPGGASPSGQ 273
            ++P+   T  P   P +  N+G           Q M+ PG  P+   G   P GQ
Sbjct: 736 QIRPTALPTFHPQYPPQVGANMGFQHAGTSHNLPQSMIHPGTKPSASVGSTFPQGQ 903


>TC204720 similar to GB|AAL84954.1|19310435|AY078954 F17H15.1/F17H15.1
            {Arabidopsis thaliana;} , partial (31%)
          Length = 1936

 Score = 41.6 bits (96), Expect = 4e-04
 Identities = 46/171 (26%), Positives = 57/171 (32%), Gaps = 13/171 (7%)
 Frame = +1

Query: 120  SRDYTVPLVPAPVWQN--PQAAPMY---PTNSPAYQTQVPGGSPAY-------QTQVPGG 167
            S+ Y     P+P   N  PQA P Y   PT+ PA     P     Y       QTQ P G
Sbjct: 1186 SQGYGTSQQPSPNAANYPPQAQPGYGVPPTSQPAAYGSQPPAQSGYGSGYGPPQTQKPSG 1365

Query: 168  QVPSWDLTQHAVRPGYVPVPGAYPGQTGAFPTMPSYGSAAMPTASSPLAQSSHPGAPHNV 227
                                           T P YG +  P  +    QS H  + +  
Sbjct: 1366 -------------------------------TPPVYGQSQSPNTAGGYGQSGHLQSGYPP 1452

Query: 228  NLQPSGGSTSGPGSSPHMQQNLGAQGMVRPG-APPNVRPGGASPSGQHYYG 277
            +  P  G  + P S        G  G V+PG  PP+   GG    GQ  YG
Sbjct: 1453 SQPPPSGGYAQPESGSQKAPPSGYGGAVQPGYGPPSY--GGVPAGGQPGYG 1599



 Score = 35.4 bits (80), Expect = 0.028
 Identities = 42/138 (30%), Positives = 53/138 (37%), Gaps = 9/138 (6%)
 Frame = +1

Query: 129  PAPVWQNPQAAPMYPTNSPAYQTQVPGGSPAY--QTQVP---GGQVPSWDLTQHAVRPGY 183
            PA     P A   Y +     QTQ P G+P    Q+Q P   GG   S  L Q    P  
Sbjct: 1282 PAAYGSQPPAQSGYGSGYGPPQTQKPSGTPPVYGQSQSPNTAGGYGQSGHL-QSGYPPSQ 1458

Query: 184  VPVPGAY-PGQTGAFPTMPS-YGSAAMPTASSPLAQSSHPGAPHNVNLQPSGGSTSGPGS 241
             P  G Y   ++G+    PS YG A  P    P    S+ G P         G   G G 
Sbjct: 1459 PPPSGGYAQPESGSQKAPPSGYGGAVQPGYGPP----SYGGVP--------AGGQPGYGQ 1602

Query: 242  SP--HMQQNLGAQGMVRP 257
            +P  +   + GA G  +P
Sbjct: 1603 APPSYSNSSYGAGGYAQP 1656


>TC206241 similar to UP|Q7X9B2 (Q7X9B2) 9/13 hydroperoxide lyase, partial (95%)
          Length = 1756

 Score = 39.3 bits (90), Expect = 0.002
 Identities = 26/78 (33%), Positives = 36/78 (45%), Gaps = 11/78 (14%)
 Frame = -2

Query: 198  PTMPSYGSAAMPTASSPLAQSS-------HPGAPHNVNLQPSGGSTSGPGSSP----HMQ 246
            P  PS+ + A  +ASSP  Q +       HP    + + Q +G  T+ P SSP    H  
Sbjct: 1338 PPSPSHSTTARASASSPPPQQTSAEQTPQHPRRSSDPSSQTAGTRTASPPSSPQTTRHGS 1159

Query: 247  QNLGAQGMVRPGAPPNVR 264
            +  G+   VR G  P VR
Sbjct: 1158 KRQGSPSRVRTGTAPQVR 1105


>TC209975 weakly similar to UP|Q7T9Y7 (Q7T9Y7) Odv-e66, partial (9%)
          Length = 537

 Score = 38.5 bits (88), Expect = 0.003
 Identities = 36/146 (24%), Positives = 51/146 (34%), Gaps = 3/146 (2%)
 Frame = +1

Query: 126 PLVPAPVWQNPQAAPMYPTNSPAYQTQVPGGSPAYQTQVPGGQVPSWDLTQHAVRPGYVP 185
           P  P+P++    A P+ P+         PG  P Y    P    PS+        P  VP
Sbjct: 4   PKTPSPIY----APPIAPS---------PGNHPPYVPTPPKTPSPSYS-------PPNVP 123

Query: 186 VPGAYPGQTGAFPTMPSYGSAAMPTASSPLAQSSHPGAPHNVNLQPS---GGSTSGPGSS 242
            P   P  +   P  P+      PT+  P      P  P  ++  PS     +T  P S 
Sbjct: 124 TPPKTPSPSSQPPFTPTPPKTPSPTSQPPYI----PTPPSPISQPPSIATPPNTLSPTSQ 291

Query: 243 PHMQQNLGAQGMVRPGAPPNVRPGGA 268
           P     +     + P  PP+  P  A
Sbjct: 292 PPYPSTIPPSTSLSPSYPPSPSPSSA 369


>TC206394 similar to UP|Q9LDK9 (Q9LDK9) Beta-adaptin-like protein A, partial
            (53%)
          Length = 1997

 Score = 38.5 bits (88), Expect = 0.003
 Identities = 26/83 (31%), Positives = 34/83 (40%)
 Frame = +3

Query: 188  GAYPGQTGAFPTMPSYGSAAMPTASSPLAQSSHPGAPHNVNLQPSGGSTSGPGSSPHMQQ 247
            G  PG  G+    PSY  ++ PT S PLA  + P          +G S   P SS  +  
Sbjct: 999  GRDPGSNGSVYNAPSYNGSSAPTTSQPLADLAFPS---------TGISGQAPASSLAIDD 1151

Query: 248  NLGAQGMVRPGAPPNVRPGGASP 270
             LG    V   A P+  P   +P
Sbjct: 1152 LLGLDFPVETAAMPSPPPLNLNP 1220


>TC219461 homologue to UP|Q9AR19 (Q9AR19) Histone acetyltransferase GCN5
           (At3g54610) (Expressed protein), partial (12%)
          Length = 853

 Score = 38.1 bits (87), Expect = 0.004
 Identities = 45/169 (26%), Positives = 65/169 (37%), Gaps = 8/169 (4%)
 Frame = +2

Query: 104 SYSRHTDLNVKAFSDKSRDYTVPLVPAPVWQ-NPQAAPMYPTNSPAYQ----TQVPGGSP 158
           S SR  +  +K +   + D++VP VP+P+    P   P  P ++ A      T++P  SP
Sbjct: 80  SDSRRKNKTLKKWISTAEDHSVPAVPSPLLPLTPPPPPPPPPSTSASSCPRTTRLP--SP 253

Query: 159 AYQTQVPGGQVPSWDLTQHAVRPGYVPVPGAYPGQTGAFPTMPSYGSAAMPTASSPLAQS 218
              +      VPS   T     P   P P   P       T     +    T + P A S
Sbjct: 254 PPPSPPTPATVPSPPTTTSRASPPAAPTPTPTPNPRTPSSTTTRTTTTTTTTTTPPCAPS 433

Query: 219 SHPGAPHNVNLQPSGGS-TSGPGSSPHMQQNLGAQGMVRPG--APPNVR 264
             PG   +  L P   + +S P + P   + L A     P   APP  R
Sbjct: 434 PPPG---SATLPPLPATPSSRPKTPPSKLRILTAPKTPEPSDLAPPPPR 571


>CO984821 
          Length = 733

 Score = 37.4 bits (85), Expect = 0.007
 Identities = 42/149 (28%), Positives = 61/149 (40%), Gaps = 5/149 (3%)
 Frame = -3

Query: 129 PAPVWQNPQAAPMYPTNSPA-YQTQVPGGS--PAYQTQVPGGQVPSWDLTQHAVRPGYVP 185
           P P W+ P ++    T +P+  Q  +P G   P  Q    GG VP+ ++  + + P  VP
Sbjct: 653 PEP-WRPPASSSQSNTTAPSPAQPNMPWGMGMPGNQNMNWGGVVPA-NMNVNWM-PAQVP 483

Query: 186 VPGAYPGQTGAFPTMPSYGSAAMPTASSPLAQSSHPGAPHNVNLQP-SGGSTSGPGSS-P 243
            PG                       S+P   +   G P +  L P + G   GPG    
Sbjct: 482 APGN----------------------SNPGWAAPSQGLPPSQGLPPVNAGGWVGPGQGRS 369

Query: 244 HMQQNLGAQGMVRPGAPPNVRPGGASPSG 272
           H+  N G  G  +  AP N  PG A+P+G
Sbjct: 368 HVNANAGWVGPGQGLAPGNANPGWAAPTG 282


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.312    0.130    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,124,043
Number of Sequences: 63676
Number of extensions: 182040
Number of successful extensions: 1314
Number of sequences better than 10.0: 143
Number of HSP's better than 10.0 without gapping: 1193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1255
length of query: 277
length of database: 12,639,632
effective HSP length: 96
effective length of query: 181
effective length of database: 6,526,736
effective search space: 1181339216
effective search space used: 1181339216
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 58 (26.9 bits)