BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC140025.16 - phase: 0
(801 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC223727 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, part... 368 e-102
TC224482 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, part... 276 2e-74
TC212032 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, part... 217 7e-70
BQ628592 106 8e-47
BI498328 117 2e-26
AW184779 112 8e-25
BI316922 99 7e-21
NP595172 polyprotein [Glycine max] 96 8e-20
BI321666 83 4e-16
BE804087 83 5e-16
BE660092 weakly similar to GP|9884624|dbj retroelement pol polyp... 78 1e-14
TC211815 47 9e-09
TC220664 weakly similar to UP|Q84TE0 (Q84TE0) At5g51080, partial... 58 1e-08
TC234722 similar to UP|Q6WAY9 (Q6WAY9) Pol (Fragment), partial (... 58 2e-08
TC233372 weakly similar to UP|Q84TE0 (Q84TE0) At5g51080, partial... 54 3e-07
BE802896 52 1e-06
BE801213 weakly similar to GP|6691193|gb| F7F22.17 {Arabidopsis ... 48 2e-05
BI424213 46 6e-05
TC211067 similar to UP|Q9LQH2 (Q9LQH2) F15O4.13, partial (9%) 46 7e-05
AW570005 43 6e-04
>TC223727 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, partial (9%)
Length = 843
Score = 368 bits (945), Expect = e-102
Identities = 170/274 (62%), Positives = 209/274 (76%)
Frame = +1
Query: 348 NHWNDVPIIKVQRLERPSHVFAIGDVIDQAGENVVDYKPWYYDIKQFLLSREYPSGASKQ 407
N D+P I+ +P+H + E D KPWY+DIK++++S+EY +
Sbjct: 46 NAARDLPYIEFWCRGKPAHCCQV--------EEERDGKPWYFDIKRYVISKEYLPEIADN 201
Query: 408 DKKTLRRLASRFLLDGDILYKRNYDMVLLRCVDEHEAEQLMHDVHDGTFGTHATGHTMSR 467
DK+TLRRLA+ F + G ILYKRN+DM LRCVD EA ++ +VH+G+FGTHA GH M+R
Sbjct: 202 DKRTLRRLAAGFFMSGSILYKRNHDMKPLRCVDAREANHMIEEVHEGSFGTHANGHAMAR 381
Query: 468 KLLRAGYYWMAMEHDCYQHARKCHKCQIYADKIHVPPHALNVISSPWPFSMWGIDMIGRI 527
K+LRAGYYW+ ME DC H RKCHKCQ +AD ++ PPH LNV+SSPWPFSMWGID+IG I
Sbjct: 382 KILRAGYYWLTMESDCCVHVRKCHKCQAFADNVNAPPHPLNVMSSPWPFSMWGIDVIGAI 561
Query: 528 EPKASNGHRFILVAIDYFTKWVEAASYTNVTKQVVAKFIKNNIICRYGVPSKIITDNGTN 587
EPKASNGHRFILVAIDYFTKWVEAASYT+V + VV +FIK IICRYG+P KIITDNGTN
Sbjct: 562 EPKASNGHRFILVAIDYFTKWVEAASYTDVMRGVVVRFIKKEIICRYGLPRKIITDNGTN 741
Query: 588 LNNNVVQALCEEFKIEHHNSSPYRPQMNGAVEAA 621
LNN ++ +CEEFKI+HHN +PYRP+MN AVE A
Sbjct: 742 LNNKMMGEICEEFKIQHHNPTPYRPKMN*AVEVA 843
>TC224482 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, partial (6%)
Length = 669
Score = 276 bits (707), Expect = 2e-74
Identities = 129/183 (70%), Positives = 158/183 (85%)
Frame = +1
Query: 619 EAANKNIKRIVQKMVTTYKDWHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEVE 678
EAANKNIK+I+QKM +YKDWHEMLP+ALHGYRT+VR+STGATPFSLVYGMEAVLP EVE
Sbjct: 1 EAANKNIKKIIQKMTVSYKDWHEMLPFALHGYRTSVRTSTGATPFSLVYGMEAVLPFEVE 180
Query: 679 IPSLRVIMEAKLSEAEWCQSRYDQLNLIEEKRMDAMARGQSYQARMKTAFDKKVHPREFK 738
+PSLR++ E+ L E+EW Q+RYDQLNLIE KR+ AM+ G+ YQ RMK+AFDKKV R+F
Sbjct: 181 VPSLRILAESGLKESEWAQTRYDQLNLIEGKRLTAMSHGRLYQQRMKSAFDKKVCLRKFH 360
Query: 739 VGELVLKRRVSQQPDPRGKWTPNYEGPYVVKKAFSGGALILTHMDGVELPNPVNADIVKK 798
G+LVLK+ D RGKW PNYEGP+VVK+AFSGGAL+LT+MDG ELP+P+N+D+VK+
Sbjct: 361 EGDLVLKKMSHAVKDHRGKWAPNYEGPFVVKRAFSGGALVLTNMDGEELPSPMNSDVVKR 540
Query: 799 YFA 801
Y+A
Sbjct: 541 YYA 549
>TC212032 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, partial (3%)
Length = 803
Score = 217 bits (553), Expect(2) = 7e-70
Identities = 104/207 (50%), Positives = 143/207 (68%)
Frame = +2
Query: 270 IEEAIDMRIKHLDIYGDSALVINQIKGEWETHHAKLIPYRDYARRLLTYFTKVELHHIPR 329
++ AID +K L +YGDSALVI+Q++GE ET LIPY+ Y + L +F ++ HH+
Sbjct: 206 VQAAIDSNVKLLKVYGDSALVIHQLRGECETRDPNLIPYQAYIKELAGFFDEISFHHVA* 385
Query: 330 DENQMADALATLSSMFRVNHWNDVPIIKVQRLERPSHVFAIGDVIDQAGENVVDYKPWYY 389
+ENQMADALATL SMF++ D+P I+ + RP+H + E D KPWY+
Sbjct: 386 EENQMADALATLVSMFQLTPHGDLPYIEFRCRGRPAHCCLV--------EEERDGKPWYF 541
Query: 390 DIKQFLLSREYPSGASKQDKKTLRRLASRFLLDGDILYKRNYDMVLLRCVDEHEAEQLMH 449
DIK+++ S+EYP AS DK+ RRLA+ F + G ILYKRN+DMVLL CV+ E E ++
Sbjct: 542 DIKRYVESKEYPLEASDNDKRRKRRLAAGFFMSGSILYKRNHDMVLLHCVNGKEVENMLG 721
Query: 450 DVHDGTFGTHATGHTMSRKLLRAGYYW 476
+VH+G+FGTH+ GH M+RK+LRAGYYW
Sbjct: 722 EVHEGSFGTHSNGHAMARKILRAGYYW 802
Score = 66.2 bits (160), Expect(2) = 7e-70
Identities = 33/61 (54%), Positives = 40/61 (65%)
Frame = +1
Query: 206 EPLIDEGPDPNSKWGLVFDGAVNAYGKGIGAVIVSLQGHHIPFTARILFECTNNMAEYEA 265
E +DE D KW + FD A N G G+GA++VS IPFT R+ F+CTNNMAEYEA
Sbjct: 22 EEKLDEDRD---KWIVWFDRASNVLGHGVGAILVSPDNQCIPFTTRLGFDCTNNMAEYEA 192
Query: 266 C 266
C
Sbjct: 193 C 195
>BQ628592
Length = 423
Score = 106 bits (264), Expect(2) = 8e-47
Identities = 48/76 (63%), Positives = 59/76 (77%)
Frame = -1
Query: 19 LSKNQPIVWNDECQEAFDSIKNYLLEPPILVPPVEGRPLILYLSVFDESVGCVLGQQDET 78
L KNQ I+WN QEAF+ IK L P +L+PPV GRP +LY+++ DES+GCVL Q D++
Sbjct: 423 LPKNQAILWNSNYQEAFEKIKQSLANPSVLMPPVTGRPFLLYMTMLDESMGCVLVQHDDS 244
Query: 79 GKKEHAIYYLSKKFTD 94
GKKE AIYYLSKKFTD
Sbjct: 243 GKKEQAIYYLSKKFTD 196
Score = 100 bits (249), Expect(2) = 8e-47
Identities = 41/61 (67%), Positives = 54/61 (88%)
Frame = -3
Query: 99 YTMLAKTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEKAVVTGKIARWQMLLSEYD 158
Y+ML +TCC L WA+ RLR Y+++HTTWLIS+MDP+KYIFEK +TG+IARWQ+LLSE++
Sbjct: 184 YSMLERTCCTLVWASHRLRQYMLSHTTWLISKMDPVKYIFEKPALTGRIARWQVLLSEFN 5
Query: 159 I 159
I
Sbjct: 4 I 2
>BI498328
Length = 335
Score = 117 bits (293), Expect = 2e-26
Identities = 62/117 (52%), Positives = 79/117 (66%), Gaps = 1/117 (0%)
Frame = +1
Query: 164 QKAIKGSILADHLAYQPLDDYQPIEFDFPDEEIMYL-KSKDCEEPLIDEGPDPNSKWGLV 222
QKA+KGS LAD+LA PL Y+P+ +FPDE+IM L + K E + +KW +
Sbjct: 7 QKAVKGSALADYLAQ*PLQGYRPMHPEFPDEDIMALFEEKRTHEDI--------NKWIVC 162
Query: 223 FDGAVNAYGKGIGAVIVSLQGHHIPFTARILFECTNNMAEYEACIFGIEEAIDMRIK 279
FDGA NA G G+GAV+VS IPFTAR+ F+CTNNMAEYEAC G++ AID +K
Sbjct: 163 FDGASNALGHGVGAVLVSPDDQCIPFTARLGFDCTNNMAEYEACALGVQAAIDFDVK 333
>AW184779
Length = 432
Score = 112 bits (279), Expect = 8e-25
Identities = 48/74 (64%), Positives = 59/74 (78%)
Frame = +1
Query: 421 LDGDILYKRNYDMVLLRCVDEHEAEQLMHDVHDGTFGTHATGHTMSRKLLRAGYYWMAME 480
L +ILYKRN+DMVLLRCVD EAEQ++ +VH+G+FGTHA H M++K+LR GYYW+ ME
Sbjct: 1 LSRNILYKRNHDMVLLRCVDAREAEQMLVEVHEGSFGTHANIHAMAQKILRVGYYWLTME 180
Query: 481 HDCYQHARKCHKCQ 494
DC H KCHKCQ
Sbjct: 181 SDCCIHVWKCHKCQ 222
Score = 83.2 bits (204), Expect = 4e-16
Identities = 48/114 (42%), Positives = 59/114 (51%), Gaps = 22/114 (19%)
Frame = +3
Query: 473 GYYWMAMEHDCY-------------QHARKCHKCQIYADKIHVPPHALNVISSPWPF--- 516
G W +H C+ R H C + VP ++ +P P+
Sbjct: 99 GILWNTCQHTCHGPEDSESGVLLAHYGERLLHPC---VEMP*VPVRPSLIMLTPHPYL*M 269
Query: 517 ------SMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYTNVTKQVVAK 564
MWGID+IG IEPKASNGH FILVAIDYFTKWVEA SY +VT+ VV +
Sbjct: 270 SWQHLGHMWGIDVIGAIEPKASNGHHFILVAIDYFTKWVEAVSYASVTRSVVIR 431
>BI316922
Length = 405
Score = 99.0 bits (245), Expect = 7e-21
Identities = 46/135 (34%), Positives = 80/135 (59%)
Frame = +3
Query: 450 DVHDGTFGTHATGHTMSRKLLRAGYYWMAMEHDCYQHARKCHKCQIYADKIHVPPHALNV 509
++H G G H+ M+ ++LR GYY M C ++ +KC +C + + H+ L+
Sbjct: 3 EMHRGICGMHSKSQLMTTRVLRVGYY**TMRKYCTEYVKKCEEC*KFGNISHLLVEELHN 182
Query: 510 ISSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYTNVTKQVVAKFIKNN 569
I +PWPF++ G+D++ R P + +++LV ID FTKW+E ++ V KF+ N
Sbjct: 183 IVAPWPFAI*GVDIL-RPFPLSKRQVKYLLVGIDQFTKWIETEHIAIISIANVRKFV*RN 359
Query: 570 IICRYGVPSKIITDN 584
I+C +G+P+ +I+DN
Sbjct: 360 IVC*FGIPNTLISDN 404
>NP595172 polyprotein [Glycine max]
Length = 4659
Score = 95.5 bits (236), Expect = 8e-20
Identities = 140/555 (25%), Positives = 230/555 (41%), Gaps = 14/555 (2%)
Frame = +1
Query: 228 NAYGKGIGAVIVSLQGHHIPFTARILFECTNNMAEYEACIFGIEEAIDMRIKHLDIYGDS 287
+A G G+GAV+ GH I + ++ L + Y + I EA+ + +H +
Sbjct: 2689 DASGIGVGAVL-GQNGHPIAYFSKKLAPRMQKQSAYTRELLAITEALS-KFRHYLLGNKF 2862
Query: 288 ALVINQIKGEWETHHAKLIPYRD-YARRLLTYFTKVELHHIPRDENQMADALATLSSMFR 346
+ +Q + + P + + + L Y K+E + P +NQ ADAL S MF
Sbjct: 2863 IIRTDQRSLKSLMDQSLQTPEQQAWLHKFLGYDFKIE--YKPGKDNQAADAL---SRMFM 3027
Query: 347 VNHWNDVPIIKVQRLERPSHVFAIGDVIDQAGENVVDYKPWYYDIKQFLLSREYPSGASK 406
+ W++ I ++ L I D +KQ L Y GA
Sbjct: 3028 LA-WSEPHSIFLEELRAR----LISDP----------------HLKQ--LMETYKQGAD- 3135
Query: 407 QDKKTLRRLASRFLLDGDILYKRNYDMVLLRCVDEHEAEQLMHDVHDGTFGTHATGHTMS 466
AS + + +LY + D V++ +E +++ + H G HA G T +
Sbjct: 3136 ---------ASHYTVREGLLYWK--DRVVIPA-EEEIVNKILQEYHSSPIGGHA-GITRT 3276
Query: 467 RKLLRAGYYWMAMEHDCYQHARKCHKCQIYADKIHVPPHALNVISSPWPFSMW---GIDM 523
L+A +YW M+ D + +KC CQ +P L + P P +W +D
Sbjct: 3277 LARLKAQFYWPKMQEDVKAYIQKCLICQQAKSNNTLPAGLLQPL--PIPQQVWEDVAMDF 3450
Query: 524 IGRIEPKASNGHRFILVAIDYFTKWVEAASY-TNVTKQVVAKFIKNNIICRYGVPSKIIT 582
I + S G I+V ID TK+ + +VVA+ ++I+ +G+P I++
Sbjct: 3451 ITGLPN--SFGLSVIMVVIDRLTKYAHFIPLKADYNSKVVAEAFMSHIVKLHGIPRSIVS 3624
Query: 583 DNGTNLNNNVVQALCEEFKIEHHN---SSPYRPQMNGAVEAANKNIKRIVQKMVTTY-KD 638
D + Q L FK++ SS Y PQ +G E NK ++ ++ + K
Sbjct: 3625 DRDRVFTSTFWQHL---FKLQGTTLAMSSAYHPQSDGQSEVLNKCLEMYLRCFTYEHPKG 3795
Query: 639 WHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEVEIPSLRVIMEAKLSEAEWCQS 698
W + LP+A Y T S G TPF +YG E P+L + AE +
Sbjct: 3796 WVKALPWAEFWYNTAYHMSLGMTPFRALYGREP--------PTLTRQACSIDDPAEVREQ 3951
Query: 699 RYDQLNLIEEKRMDAMARGQSYQARMKTAFDKKVHPREFKVGELVL-----KRRVSQQPD 753
D+ L+ + +++ + R Q MK DKK F++G+ VL R+ S
Sbjct: 3952 LTDRDALLAKLKIN-LTRAQQV---MKRQADKKRLDVSFQIGDEVLVKLQPYRQHSAVLR 4119
Query: 754 PRGKWTPNYEGPYVV 768
K + Y GP+ V
Sbjct: 4120 KNQKLSMRYFGPFKV 4164
Score = 59.3 bits (142), Expect = 6e-09
Identities = 46/162 (28%), Positives = 73/162 (44%), Gaps = 1/162 (0%)
Frame = +1
Query: 17 DCLSKNQPIVWNDECQEAFDSIKNYLLEPPILVPPVEGRPLILYLSVFDESVGCVLGQQD 76
D L K+ +WN+E + AF +K + E P+L P +P IL VG VLGQ
Sbjct: 2557 DLLQKDS-FLWNNEAEAAFVKLKKAMTEAPVLSLPDFSQPFILETDASGIGVGAVLGQNG 2733
Query: 77 ETGKKEHAIYYLSKKFTDCETRYTMLAKTCCALAWAAKRLRHYLVNHTTWLISRMDPIKY 136
H I Y SKK + + + A+ A + RHYL+ + + + +K
Sbjct: 2734 ------HPIAYFSKKLAPRMQKQSAYTRELLAITEALSKFRHYLLGNKFIIRTDQRSLKS 2895
Query: 137 IFEKAVVTGKIARWQMLLSEYDIVFKAQ-KAIKGSILADHLA 177
+ ++++ T + W YD FK + K K + AD L+
Sbjct: 2896 LMDQSLQTPEQQAWLHKFLGYD--FKIEYKPGKDNQAADALS 3015
>BI321666
Length = 430
Score = 83.2 bits (204), Expect = 4e-16
Identities = 45/129 (34%), Positives = 71/129 (54%), Gaps = 3/129 (2%)
Frame = +2
Query: 465 MSRKLLRAGYYWMAMEHDCYQHARKCHKCQ---IYADKIHVPPHALNVISSPWPFSMWGI 521
+S +L++ +Y ++ D Y HA+ C+KCQ + + +P H + + F WGI
Sbjct: 2 ISTNVLQSRFYLPSIFKDAYVHAQSCNKCQRTRSVSKRNELPLHTILEVEI---FDYWGI 172
Query: 522 DMIGRIEPKASNGHRFILVAIDYFTKWVEAASYTNVTKQVVAKFIKNNIICRYGVPSKII 581
D +G P SN +ILV +DY +KWVEA + ++V KF+K I R GVP +I
Sbjct: 173 DFVGPFPPSFSN--EYILVVVDYVSKWVEAVACQKSDAKIVIKFLKKQIFSRLGVPWVLI 346
Query: 582 TDNGTNLNN 590
+ G++L N
Sbjct: 347 DNGGSHLCN 373
>BE804087
Length = 160
Score = 82.8 bits (203), Expect = 5e-16
Identities = 38/53 (71%), Positives = 44/53 (82%)
Frame = +2
Query: 619 EAANKNIKRIVQKMVTTYKDWHEMLPYALHGYRTTVRSSTGATPFSLVYGMEA 671
EAANKNIK+ + KM +YKDWHEM +ALH YRT VR+STGATP+SLVYG EA
Sbjct: 2 EAANKNIKKNI*KMTVSYKDWHEMFSFALHMYRTLVRTSTGATPYSLVYGKEA 160
>BE660092 weakly similar to GP|9884624|dbj retroelement pol polyprotein-like
{Arabidopsis thaliana}, partial (13%)
Length = 378
Score = 78.2 bits (191), Expect = 1e-14
Identities = 41/122 (33%), Positives = 71/122 (57%), Gaps = 1/122 (0%)
Frame = -3
Query: 593 VQALCEEFKIEHHNSSPYRPQMNGAVEAANKNIKRIVQKMVT-TYKDWHEMLPYALHGYR 651
+ AL +++ + H S+PY PQ NG E +N+ IKRI++K+V + KDW L AL +R
Sbjct: 376 MHALLKKYGVVHRVSTPYHPQTNGQAEISNREIKRILEKIVQPSRKDWSTRLDDALWAHR 197
Query: 652 TTVRSSTGATPFSLVYGMEAVLPLEVEIPSLRVIMEAKLSEAEWCQSRYDQLNLIEEKRM 711
T ++ G +P+ +V+G LP+E+E + + S + + R QL+ ++E R+
Sbjct: 196 TAYKAPIGMSPYRVVFGKACHLPVEIEHKAYWAVKTCNFSMDQAGEERKLQLSELDEIRL 17
Query: 712 DA 713
+A
Sbjct: 16 EA 11
>TC211815
Length = 704
Score = 47.4 bits (111), Expect(2) = 9e-09
Identities = 41/147 (27%), Positives = 71/147 (47%)
Frame = +2
Query: 655 RSSTGATPFSLVYGMEAVLPLEVEIPSLRVIMEAKLSEAEWCQSRYDQLNLIEEKRMDAM 714
+S+T TPF L+YG+ +LP+EV L A++ E Q L+LI++ R D +
Sbjct: 230 QSTTHETPF*LIYGISVMLPIEVGEVFL*RHYFAEV*NKEALQI---DLDLIKQVREDTV 400
Query: 715 ARGQSYQARMKTAFDKKVHPREFKVGELVLKRRVSQQPDPRGKWTPNYEGPYVVKKAFSG 774
+++ RM F+ K+ G + + S + R K+T N EGP+ ++
Sbjct: 401 IMT*AFKQRMTRCFNSKLPSTV*GRGPSMEGIQRSLEVLVRSKFTTN*EGPFKIRHNSKN 580
Query: 775 GALILTHMDGVELPNPVNADIVKKYFA 801
GA L + G + N+ +K Y++
Sbjct: 581 GAYKLEELSGKVVLRIWNSMHLKVYYS 661
Score = 31.2 bits (69), Expect(2) = 9e-09
Identities = 17/51 (33%), Positives = 24/51 (46%)
Frame = +3
Query: 583 DNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMNGAVEAANKNIKRIVQKMV 633
DNG N + I+H +S PQ N EAANK I ++K++
Sbjct: 3 DNGLQFTNRKLNEFPSGLNIKHRVTSVKHPQTNRRAEAANKVILGDLKKLL 155
>TC220664 weakly similar to UP|Q84TE0 (Q84TE0) At5g51080, partial (31%)
Length = 724
Score = 58.2 bits (139), Expect = 1e-08
Identities = 32/86 (37%), Positives = 46/86 (53%)
Frame = +1
Query: 257 TNNMAEYEACIFGIEEAIDMRIKHLDIYGDSALVINQIKGEWETHHAKLIPYRDYARRLL 316
TNN AEY A I G++ A+ + I GDS LV QI G W+ + L + A+ L
Sbjct: 64 TNNAAEYRAMILGMKYALKKGFTGIRIQGDSKLVCMQIDGSWKVKNENLSTLYNVAKELK 243
Query: 317 TYFTKVELHHIPRDENQMADALATLS 342
F+ ++ H+ R+ N ADA A L+
Sbjct: 244 DKFSSFQISHVLRNFNSDADAQANLA 321
>TC234722 similar to UP|Q6WAY9 (Q6WAY9) Pol (Fragment), partial (32%)
Length = 482
Score = 57.8 bits (138), Expect = 2e-08
Identities = 29/70 (41%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
Frame = -3
Query: 610 YRPQMNGAVEAANKNIKRIVQKMV-TTYKDWHEMLPYALHGYRTTVRSSTGATPFSLVYG 668
Y PQ NG E +NK IKR+++ +V ++ KDW L A YR ++ G +PF LVYG
Sbjct: 234 YHPQTNGQAEVSNKEIKRVLENIVVSSRKDWALKLDDAFWAYRIAFKTPIGLSPFQLVYG 55
Query: 669 MEAVLPLEVE 678
L +E+E
Sbjct: 54 KACHLSVELE 25
>TC233372 weakly similar to UP|Q84TE0 (Q84TE0) At5g51080, partial (12%)
Length = 561
Score = 53.9 bits (128), Expect = 3e-07
Identities = 30/86 (34%), Positives = 43/86 (49%)
Frame = +1
Query: 261 AEYEACIFGIEEAIDMRIKHLDIYGDSALVINQIKGEWETHHAKLIPYRDYARRLLTYFT 320
AEY + I G+ K + + GDS LV NQI+G W+ + + A+ L F
Sbjct: 1 AEYRSLILGLXHXXKKGYKXIIVQGDSLLVCNQIQGLWKIKNQNMGTLCXEAKELKDKFL 180
Query: 321 KVELHHIPRDENQMADALATLSSMFR 346
++ HIPR+ N ADA A L+ R
Sbjct: 181 SFKISHIPREYNSEADAQANLAINLR 258
>BE802896
Length = 416
Score = 51.6 bits (122), Expect = 1e-06
Identities = 31/103 (30%), Positives = 49/103 (47%)
Frame = -2
Query: 19 LSKNQPIVWNDECQEAFDSIKNYLLEPPILVPPVEGRPLILYLSVFDESVGCVLGQQDET 78
L K +ND+C+ AFD +K L+ PI+ P P L + ++G VL Q+ +
Sbjct: 337 LQKEVEFDFNDKCK*AFDCLKRALITTPIIQAPDWTAPFELMCDASNYALGVVLAQKID- 161
Query: 79 GKKEHAIYYLSKKFTDCETRYTMLAKTCCALAWAAKRLRHYLV 121
K IYY S+ + YT K A+ +A ++ YL+
Sbjct: 160 -KLPRVIYYSSRTLDAAQANYTTTEKELLAIVFALEKFHSYLL 35
>BE801213 weakly similar to GP|6691193|gb| F7F22.17 {Arabidopsis thaliana},
partial (3%)
Length = 416
Score = 47.8 bits (112), Expect = 2e-05
Identities = 23/81 (28%), Positives = 43/81 (52%)
Frame = +3
Query: 560 QVVAKFIKNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMNGAVE 619
++V KF+K NI R+G+P +I+D G++ + + + + + H + Y PQ NG +
Sbjct: 12 KIVIKFLKKNIFSRFGMPRILISDGGSHFYYSQLNKVLKHDSVRHKVETSYHPQTNGQAK 191
Query: 620 AANKNIKRIVQKMVTTYKDWH 640
+N + + +K K WH
Sbjct: 192 VSNIHKENS*EK-----KMWH 239
Score = 35.4 bits (80), Expect = 0.100
Identities = 16/49 (32%), Positives = 27/49 (54%)
Frame = +2
Query: 630 QKMVTTYKDWHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEVE 678
+ + ++ KDW L AL +T ++ G TPF +VY LP+E++
Sbjct: 227 KNVASSRKDWSSKLEDALWACKTAKKTPIGLTPFQMVYRKACHLPVELK 373
>BI424213
Length = 426
Score = 46.2 bits (108), Expect = 6e-05
Identities = 20/72 (27%), Positives = 39/72 (53%), Gaps = 1/72 (1%)
Frame = +1
Query: 607 SSPYRPQMNGAVEAANKNIKRIVQKMVT-TYKDWHEMLPYALHGYRTTVRSSTGATPFSL 665
S+ PQ +G + N+++ +++ ++ +K W E LP+ Y V +T +PF +
Sbjct: 55 STTCHPQTDGQTKVVNRSLSTLLRALLKGNHKSWDEYLPHVEFAYNRGVHRTTKQSPFEV 234
Query: 666 VYGMEAVLPLEV 677
VYG + PL++
Sbjct: 235 VYGFNPLTPLDL 270
>TC211067 similar to UP|Q9LQH2 (Q9LQH2) F15O4.13, partial (9%)
Length = 589
Score = 45.8 bits (107), Expect = 7e-05
Identities = 35/134 (26%), Positives = 54/134 (40%)
Frame = +1
Query: 17 DCLSKNQPIVWNDECQEAFDSIKNYLLEPPILVPPVEGRPLILYLSVFDESVGCVLGQQD 76
+ + KN W ++ ++AF +K L + P+L P + L V VL Q
Sbjct: 199 ELVKKNMAFTWGEKQEQAFALLKEKLTKAPVLALPDFSKTFELECDASGVGVRAVLLQGG 378
Query: 77 ETGKKEHAIYYLSKKFTDCETRYTMLAKTCCALAWAAKRLRHYLVNHTTWLISRMDPIKY 136
H I Y S+K Y K AL A + H+LV + S +KY
Sbjct: 379 ------HPIAYFSEKLHSATLNYPTYDKELYALIRAPQTWEHFLVCKEFVIHSDHQSLKY 540
Query: 137 IFEKAVVTGKIARW 150
I K+ + + A+W
Sbjct: 541 IRGKSKLNKRHAKW 582
>AW570005
Length = 413
Score = 42.7 bits (99), Expect = 6e-04
Identities = 28/108 (25%), Positives = 43/108 (38%)
Frame = -2
Query: 16 LDCLSKNQPIVWNDECQEAFDSIKNYLLEPPILVPPVEGRPLILYLSVFDESVGCVLGQQ 75
L L VW+ E AF ++KN + +L P +P + +G VL Q+
Sbjct: 316 LSHLLTKDSFVWSPEADVAFQALKNVVTNTLVLALPDFTKPFTVETDASGSDMGAVLSQE 137
Query: 76 DETGKKEHAIYYLSKKFTDCETRYTMLAKTCCALAWAAKRLRHYLVNH 123
H I + SK+F R + A+ K+ R YL+ H
Sbjct: 136 G------HPIAFFSKEFCPKLVRSSTYVHELAAITNVVKKWRQYLLGH 11
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.322 0.137 0.425
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,252,667
Number of Sequences: 63676
Number of extensions: 549487
Number of successful extensions: 2619
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 2452
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2608
length of query: 801
length of database: 12,639,632
effective HSP length: 105
effective length of query: 696
effective length of database: 5,953,652
effective search space: 4143741792
effective search space used: 4143741792
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.9 bits)
Medicago: description of AC140025.16