BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC140025.10 - phase: 0
(344 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC229335 similar to UP|Q39540 (Q39540) AOBP (Ascorbate oxidase p... 236 1e-62
BI786500 224 4e-59
TC221073 similar to UP|Q93ZL5 (Q93ZL5) AT5g39660/MIJ24_130, part... 160 1e-39
TC220449 149 2e-36
TC211022 similar to UP|O81600 (O81600) H-protein promoter bindin... 127 1e-29
BU547702 similar to GP|15983797|gb| AT5g39660/MIJ24_130 {Arabido... 120 1e-27
TC210896 similar to UP|Q39540 (Q39540) AOBP (Ascorbate oxidase p... 119 2e-27
TC230109 homologue to UP|Q8LDR0 (Q8LDR0) Zinc finger protein OBP... 100 1e-21
BU549210 similar to PIR|T09661|T096 ascorbate oxidase promoter-b... 98 6e-21
BM094932 93 2e-19
TC213102 homologue to UP|O82155 (O82155) Dof zinc finger protein... 92 3e-19
TC230594 homologue to UP|Q8LDR0 (Q8LDR0) Zinc finger protein OBP... 91 6e-19
TC222381 similar to UP|Q76KV2 (Q76KV2) DNA binding with one fing... 91 6e-19
AW100071 similar to GP|9758539|dbj| DNA binding protein-like {Ar... 91 1e-18
BE611146 similar to GP|2262110|gb|A zinc finger protein isolog {... 90 1e-18
TC229486 similar to UP|Q76KV2 (Q76KV2) DNA binding with one fing... 90 2e-18
BG881300 similar to GP|21538793|emb dof zinc finger protein {Hor... 89 2e-18
CA939085 89 4e-18
TC218726 similar to UP|O82027 (O82027) Dof zinc finger protein (... 89 4e-18
TC221762 homologue to UP|Q76KV0 (Q76KV0) DNA binding with one fi... 88 5e-18
>TC229335 similar to UP|Q39540 (Q39540) AOBP (Ascorbate oxidase
promoter-binding protein), partial (34%)
Length = 1181
Score = 236 bits (602), Expect = 1e-62
Identities = 138/289 (47%), Positives = 181/289 (61%), Gaps = 7/289 (2%)
Frame = +3
Query: 63 QNSRIHPSVKCNGTILTFG--SNSPVCESMASVLKHADKTMQNYTRNGYHK-HEELRICV 119
QN P++K NG +L+FG +++P+C+SMAS++ +K N TRNG+H E+ R+ V
Sbjct: 21 QNGTHLPTLKGNGRVLSFGLDAHAPICDSMASLMNLGEKKALNGTRNGFHHGFEDQRLPV 200
Query: 120 PHTSEEQGEDQSNKSSVTSTKSTEGATTNVSQEQAMWNDHSFPPQGGYFPHGTPWHLPWN 179
P S E G+D S SS+T + + Q+Q + +H F PQ P G PW WN
Sbjct: 201 PCKSGENGDDSSTTSSITISSPKGENNKSTFQQQPLPQNHGFLPQVPCIP-GVPWPYTWN 377
Query: 180 PVQMSSPIPPPAFCPPGFSMPFYPATTYWGCTMPSAWNIP--RQAQPSSPNGANHDSTPN 237
SP+PPPA CP GF +PFYPAT +W C MP WN+P + P+S N + S+PN
Sbjct: 378 -----SPVPPPALCPSGFPLPFYPAT-FWNCGMPGNWNVPWFSSSSPAS-NLKSPSSSPN 536
Query: 238 SPTLGKHSREDNMLKSSEGDGKKEISEEK--SLWFPKTLRIDDSEEAEKSSFWTTLGIKN 295
SPTLGKHSR+ +M+K + K+E S + S+ PKTLRIDD EA KSS W TLGIKN
Sbjct: 537 SPTLGKHSRDSDMIKQ-DSLHKEEASTPRNGSVLVPKTLRIDDPSEAAKSSIWATLGIKN 713
Query: 296 NNADSVPPRRLFQAFPSKCDEKNHLVQVSSVLQANPAALSRSLHFHETS 344
+SV +F+AF SK EKNH V+ S +L ANPAALSRSL+FHE S
Sbjct: 714 ---ESVSGGAMFKAFQSKKGEKNH-VEASPMLMANPAALSRSLNFHENS 848
>BI786500
Length = 407
Score = 224 bits (571), Expect = 4e-59
Identities = 108/135 (80%), Positives = 118/135 (87%), Gaps = 7/135 (5%)
Frame = +3
Query: 11 YNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKSSSSHYRQITVSEATLQNSRI--- 67
YNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKSS+SHYRQITVSEA LQN R
Sbjct: 3 YNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKSSASHYRQITVSEAALQNPRTDLP 182
Query: 68 ----HPSVKCNGTILTFGSNSPVCESMASVLKHADKTMQNYTRNGYHKHEELRICVPHTS 123
HPS+KCNGT+LTFG+++P+CESMASVL ADKTM NYTRNG+HK EELRI VPH S
Sbjct: 183 NGAYHPSLKCNGTVLTFGTDTPLCESMASVLNLADKTMPNYTRNGFHKPEELRIPVPHAS 362
Query: 124 EEQGEDQSNKSSVTS 138
E+G+DQSNKSSVTS
Sbjct: 363 GEKGDDQSNKSSVTS 407
>TC221073 similar to UP|Q93ZL5 (Q93ZL5) AT5g39660/MIJ24_130, partial (21%)
Length = 692
Score = 160 bits (404), Expect = 1e-39
Identities = 74/101 (73%), Positives = 83/101 (81%), Gaps = 7/101 (6%)
Frame = +1
Query: 1 MDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKSSSSHYRQITVSEA 60
MDTKFCYYNNYNVNQPRHFCKNCQRYWTAGG MRNVPVGAGRRKNK+ +S YRQITV EA
Sbjct: 385 MDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGVMRNVPVGAGRRKNKNFTSQYRQITVPEA 564
Query: 61 TLQNSR-------IHPSVKCNGTILTFGSNSPVCESMASVL 94
L +S+ HPS+ CN T+L FGS++P+CESM SVL
Sbjct: 565 ALLSSQPDLPNGVSHPSLNCNATLLAFGSDTPLCESMTSVL 687
>TC220449
Length = 837
Score = 149 bits (375), Expect = 2e-36
Identities = 74/138 (53%), Positives = 87/138 (62%), Gaps = 1/138 (0%)
Frame = +2
Query: 101 MQNYTRNGYHKHEELRICVPHTSEEQGEDQSNKSSVTSTKSTEGATTNVSQEQAMWNDHS 160
+ N T NG++ EEL I + E+ D SNKSS STK EG TTN SQEQ + N H
Sbjct: 2 VNNSTTNGFNGSEELEIPFAYVGGEKVNDDSNKSSDMSTKPMEGETTNRSQEQVIENCHP 181
Query: 161 FPPQGGYFPHGTPWHLPWNPVQMSSPIP-PPAFCPPGFSMPFYPATTYWGCTMPSAWNIP 219
FPP YFP G PW PWNP +SP+P PPAF P GF+MP YPA YWG T+P AW+IP
Sbjct: 182 FPPHVPYFP-GAPWPFPWNPALWNSPVPLPPAFFPQGFTMPLYPAAAYWGLTIPGAWSIP 358
Query: 220 RQAQPSSPNGANHDSTPN 237
AQPS PN +S P+
Sbjct: 359 WLAQPSLPNSTVSNSGPD 412
>TC211022 similar to UP|O81600 (O81600) H-protein promoter binding factor-2a,
partial (19%)
Length = 578
Score = 127 bits (318), Expect = 1e-29
Identities = 58/67 (86%), Positives = 63/67 (93%)
Frame = +1
Query: 1 MDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKSSSSHYRQITVSEA 60
MDTKFCYYNNYNVNQPR+FCK CQRYWTAGGTMRNVPVGAGRRKNK+S+SHYR IT+SEA
Sbjct: 376 MDTKFCYYNNYNVNQPRYFCKACQRYWTAGGTMRNVPVGAGRRKNKNSTSHYRHITISEA 555
Query: 61 TLQNSRI 67
LQ +RI
Sbjct: 556 -LQAARI 573
>BU547702 similar to GP|15983797|gb| AT5g39660/MIJ24_130 {Arabidopsis
thaliana}, partial (12%)
Length = 674
Score = 120 bits (300), Expect = 1e-27
Identities = 63/107 (58%), Positives = 76/107 (70%), Gaps = 4/107 (3%)
Frame = -1
Query: 242 GKHSREDNMLKSS----EGDGKKEISEEKSLWFPKTLRIDDSEEAEKSSFWTTLGIKNNN 297
GKHSRE+NM KS+ E + KE +EK LW PKTLRID EA K+S WTTLGIKNN
Sbjct: 674 GKHSREENMHKSNGVAVEDEHSKEXXKEKCLWVPKTLRIDXXGEAAKTSIWTTLGIKNNK 495
Query: 298 ADSVPPRRLFQAFPSKCDEKNHLVQVSSVLQANPAALSRSLHFHETS 344
AD P LF++ PS+ EKN +++ S VL ANPAALSRS++F ETS
Sbjct: 494 ADLXPGGGLFKSLPSQGGEKNRVIKNSPVLHANPAALSRSINFQETS 354
>TC210896 similar to UP|Q39540 (Q39540) AOBP (Ascorbate oxidase
promoter-binding protein), partial (15%)
Length = 633
Score = 119 bits (299), Expect = 2e-27
Identities = 87/211 (41%), Positives = 111/211 (52%), Gaps = 15/211 (7%)
Frame = +1
Query: 51 HYRQITVSEATLQNSRIHPS-----VKCNGTILTFGSNSPVCESMASVLK-HADK--TMQ 102
HYR IT+SEA LQ +RI +K NG +L+FG + P+C+SMAS+L A+K T+
Sbjct: 1 HYRHITISEA-LQAARIDAPNGTHLLKQNGRVLSFGLDPPICDSMASILNLTAEKKGTLN 177
Query: 103 NYTRNGYHKHEELRICVPHTSEEQ-GEDQSNKSSVTSTKSTEGATTNVSQEQAMWNDHSF 161
N TRNG+H E+ R H + G+D S+ SS+T + G +T SQE M
Sbjct: 178 NNTRNGFHTIEDQRNKDNHNNNNNNGDDCSSASSITVSNEESGKST--SQESIM------ 333
Query: 162 PPQGGYFPHGTPW--HLPWNPVQMSSPIPPPAFCPPGFSMPFYPATTYWGCTMPSAWNIP 219
P F H P LPW P PA CPPGF M FYPA + WNIP
Sbjct: 334 VPNSNGFIHQVPCISTLPW---PYPFPSAAPAMCPPGFPMSFYPA---------AFWNIP 477
Query: 220 ----RQAQPSSPNGANHDSTPNSPTLGKHSR 246
+ + S+P + S PNSPTLGKHSR
Sbjct: 478 WFPSQHSHHSAPTPRSPSSGPNSPTLGKHSR 570
>TC230109 homologue to UP|Q8LDR0 (Q8LDR0) Zinc finger protein OBP4-like,
partial (27%)
Length = 696
Score = 100 bits (249), Expect = 1e-21
Identities = 56/133 (42%), Positives = 78/133 (58%), Gaps = 6/133 (4%)
Frame = +2
Query: 1 MDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKSSSSHYRQITVSEA 60
++TKFCYYNNYN++QPRHFCKNC+RYWT GG +RNVPVG G RK+K SS +IT SE
Sbjct: 254 LNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRNVPVGGGCRKSKRSSKP-NKITPSET 430
Query: 61 TLQNSRIHPSVKCNGTILTFGSNSPVCESMASVLK--HADKTMQNYTRNGYHKHEELRIC 118
HP N + +S + + A+ + A +T+ N N + +E ++
Sbjct: 431 ASPPPPPHPDHNNNSNSHSSSESSSLTAAAATTTEAVSAPETL-NSDSNNNNNMQESKLL 607
Query: 119 VP----HTSEEQG 127
+P + S EQG
Sbjct: 608 IPALETNNSLEQG 646
>BU549210 similar to PIR|T09661|T096 ascorbate oxidase promoter-binding
protein AOBP - winter squash, partial (9%)
Length = 666
Score = 97.8 bits (242), Expect = 6e-21
Identities = 51/69 (73%), Positives = 56/69 (80%)
Frame = -3
Query: 276 IDDSEEAEKSSFWTTLGIKNNNADSVPPRRLFQAFPSKCDEKNHLVQVSSVLQANPAALS 335
IDDSE A KSS W TLGIKN+ ADSVP LF+AFPSK D+KNH +Q S VLQANPAA S
Sbjct: 664 IDDSEAA-KSSIWATLGIKNDKADSVPGGTLFKAFPSKHDDKNHSMQASPVLQANPAAXS 488
Query: 336 RSLHFHETS 344
RSL+FHETS
Sbjct: 487 RSLNFHETS 461
>BM094932
Length = 412
Score = 92.8 bits (229), Expect = 2e-19
Identities = 41/78 (52%), Positives = 53/78 (67%), Gaps = 2/78 (2%)
Frame = +2
Query: 2 DTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRK--NKSSSSHYRQITVSE 59
+TKFCYYNNYN++QPRHFCKNC+RYWT GG +RN+PVG G RK +SSS+ R S
Sbjct: 50 NTKFCYYNNYNLSQPRHFCKNCRRYWTKGGALRNIPVGGGSRKTTKRSSSTSKRSSAPSS 229
Query: 60 ATLQNSRIHPSVKCNGTI 77
++ S P+ C +
Sbjct: 230 SSSAVSDPDPTRNCTNPV 283
>TC213102 homologue to UP|O82155 (O82155) Dof zinc finger protein, partial
(34%)
Length = 451
Score = 92.0 bits (227), Expect = 3e-19
Identities = 36/49 (73%), Positives = 42/49 (85%)
Frame = +1
Query: 2 DTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKSSSS 50
+TKFCYYNNYN++QPRHFCKNC+RYWT GG +RN+PVG G RKN SS
Sbjct: 82 NTKFCYYNNYNLSQPRHFCKNCRRYWTKGGALRNIPVGGGSRKNTKRSS 228
>TC230594 homologue to UP|Q8LDR0 (Q8LDR0) Zinc finger protein OBP4-like,
partial (24%)
Length = 928
Score = 91.3 bits (225), Expect = 6e-19
Identities = 37/65 (56%), Positives = 48/65 (72%)
Frame = +3
Query: 1 MDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKSSSSHYRQITVSEA 60
++TKFCYYNNYN++QPRHFCKNC+RYWT GG +RNVP G G RK+K S+ + +
Sbjct: 348 LNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRNVPFGGGCRKSKRSNKPKTTTSAAAT 527
Query: 61 TLQNS 65
T N+
Sbjct: 528 TSSNN 542
>TC222381 similar to UP|Q76KV2 (Q76KV2) DNA binding with one finger 2
protein, partial (36%)
Length = 485
Score = 91.3 bits (225), Expect = 6e-19
Identities = 37/49 (75%), Positives = 45/49 (91%)
Frame = +1
Query: 2 DTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKSSSS 50
+TKFCYYNNY+++QPR+FCK+C+RYWT GGT+RNVPVG G RKNK SSS
Sbjct: 181 NTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNKRSSS 327
>AW100071 similar to GP|9758539|dbj| DNA binding protein-like {Arabidopsis
thaliana}, partial (31%)
Length = 339
Score = 90.5 bits (223), Expect = 1e-18
Identities = 38/61 (62%), Positives = 49/61 (80%), Gaps = 1/61 (1%)
Frame = +1
Query: 2 DTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKN-KSSSSHYRQITVSEA 60
+TKFCYYNNYN +QPRHFCK+C+RYWT GGT+R++PVG G R+N K S +H+ T S +
Sbjct: 127 NTKFCYYNNYNYSQPRHFCKSCRRYWTHGGTLRDIPVGGGSRQNAKRSCTHHVAATSSSS 306
Query: 61 T 61
T
Sbjct: 307 T 309
>BE611146 similar to GP|2262110|gb|A zinc finger protein isolog {Arabidopsis
thaliana}, partial (26%)
Length = 424
Score = 90.1 bits (222), Expect = 1e-18
Identities = 35/50 (70%), Positives = 44/50 (88%)
Frame = +1
Query: 1 MDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKSSSS 50
++TKFCYYNNY++ QPR+FCK C+RYWT GGT+RN+PVG G RKNK SS+
Sbjct: 223 INTKFCYYNNYSLTQPRYFCKTCRRYWTEGGTLRNIPVGGGSRKNKRSSA 372
>TC229486 similar to UP|Q76KV2 (Q76KV2) DNA binding with one finger 2
protein, partial (21%)
Length = 1297
Score = 89.7 bits (221), Expect = 2e-18
Identities = 35/46 (76%), Positives = 40/46 (86%)
Frame = +1
Query: 2 DTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKS 47
+TKFCYYNNYN+ QPRHFCK C+RYWT GG +RNVP+G G RKNKS
Sbjct: 238 NTKFCYYNNYNLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKS 375
>BG881300 similar to GP|21538793|emb dof zinc finger protein {Hordeum vulgare
subsp. vulgare}, partial (33%)
Length = 394
Score = 89.4 bits (220), Expect = 2e-18
Identities = 35/47 (74%), Positives = 41/47 (86%)
Frame = +3
Query: 2 DTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKSS 48
+TKFCYYNNYN+ QPRHFCK C+RYWT GG +RNVP+G G RK+KSS
Sbjct: 162 NTKFCYYNNYNLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKSKSS 302
>CA939085
Length = 421
Score = 88.6 bits (218), Expect = 4e-18
Identities = 54/145 (37%), Positives = 77/145 (52%), Gaps = 1/145 (0%)
Frame = +1
Query: 67 IHPSVKCNGT-ILTFGSNSPVCESMASVLKHADKTMQNYTRNGYHKHEELRICVPHTSEE 125
+H +V NG +LTFG +SP+C++MAS+L A++ Q+ NG+ E V + EE
Sbjct: 25 LHNAVLGNGAAVLTFGPDSPLCDTMASMLNIAERA-QSCVPNGFQATEPNSF-VSYRKEE 198
Query: 126 QGEDQSNKSSVTSTKSTEGATTNVSQEQAMWNDHSFPPQGGYFPHGTPWHLPWNPVQMSS 185
G + + V S +T ++ + S E F PQ YFP G PW P+
Sbjct: 199 DGSTSGHSTGV-SVATTSTSSHSGSHESVDKRVEGFTPQLPYFPSG-PW--PY------- 345
Query: 186 PIPPPAFCPPGFSMPFYPATTYWGC 210
P+PPP FCPPG+ + FY YWGC
Sbjct: 346 PMPPPTFCPPGYPLSFYTTPAYWGC 420
>TC218726 similar to UP|O82027 (O82027) Dof zinc finger protein (Fragment),
partial (35%)
Length = 1153
Score = 88.6 bits (218), Expect = 4e-18
Identities = 59/193 (30%), Positives = 89/193 (45%), Gaps = 18/193 (9%)
Frame = +2
Query: 2 DTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKSSS------------ 49
+TKFCYYNNY+++QPR+FCK C+RYWT GG++RNVPVG G RKNK S+
Sbjct: 248 NTKFCYYNNYSLSQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRSTPPAPPSAPAPTK 427
Query: 50 --SHYRQITVSEATLQNSRIHPSVKCNGTILTFGSNSPVCESMASVLKHAD---KTMQNY 104
S ++ Q+ +IH N L + P E ++V K + T +
Sbjct: 428 KLSDLATPNFPQSASQDPKIHQGQDLN---LAY----PPAEDYSTVSKFIEVPYSTELDK 586
Query: 105 TRNGYHKHEELRICVPHTSEEQGEDQSNKSSVTSTKSTEGATTNVSQEQAMWND-HSFPP 163
G H++ ++ Q + + T ++ ++ M+N H FP
Sbjct: 587 GTTGLHQNP-----TSSSTTTSASSQLSAMELLKTGIAAASSRGLNSFMPMYNSTHGFPL 751
Query: 164 QGGYFPHGTPWHL 176
Q PHG + L
Sbjct: 752 QDFKPPHGLNFSL 790
>TC221762 homologue to UP|Q76KV0 (Q76KV0) DNA binding with one finger 4
protein, partial (19%)
Length = 472
Score = 88.2 bits (217), Expect = 5e-18
Identities = 35/45 (77%), Positives = 41/45 (90%)
Frame = +1
Query: 2 DTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNK 46
+TKFCYYNNY+++QPRHFCK C+RYWT GGT+RNVPVG G RKNK
Sbjct: 172 NTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNK 306
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.312 0.127 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,410,271
Number of Sequences: 63676
Number of extensions: 370164
Number of successful extensions: 2755
Number of sequences better than 10.0: 210
Number of HSP's better than 10.0 without gapping: 2420
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2647
length of query: 344
length of database: 12,639,632
effective HSP length: 98
effective length of query: 246
effective length of database: 6,399,384
effective search space: 1574248464
effective search space used: 1574248464
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 59 (27.3 bits)
Medicago: description of AC140025.10