BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC140024.11 + phase: 0
(381 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BU081671 57 2e-08
BE554879 53 2e-07
BI471312 weakly similar to PIR|T07816|T078 S-locus-specific glyc... 43 2e-04
CF922064 39 0.004
BE211320 weakly similar to GP|1272351|gb|A receptor protein kina... 35 0.043
BG043094 similar to PIR|T14450|T144 serine/threonine kinase (EC ... 34 0.13
BE806056 similar to PIR|S10930|S109 S-receptor kinase (EC 2.7.1.... 33 0.16
BQ611251 31 0.81
AW234696 31 0.81
TC228608 similar to UP|Q940G7 (Q940G7) G protein-coupled recepto... 31 1.1
BQ453284 30 1.4
TC210533 weakly similar to GB|AAB61094.1|2194119|F20P5 F20P5.5 {... 30 1.8
TC213940 weakly similar to UP|Q70I30 (Q70I30) S-receptor kinase-... 30 1.8
TC220920 similar to UP|O65001 (O65001) Terminal ear1, partial (9%) 30 2.4
BE803382 30 2.4
TC226015 similar to UP|Q39436 (Q39436) SIEP1L protein precursor,... 29 4.0
TC216094 similar to UP|Q6SJQ9 (Q6SJQ9) TFIID component TAF2 (Fra... 28 6.9
TC232282 similar to UP|Q84XK3 (Q84XK3) S-related kinase 8 (Fragm... 28 9.0
TC208115 similar to UP|Q7Y1X6 (Q7Y1X6) ROS1 (Fragment), partial ... 28 9.0
TC221852 similar to GB|AAB61094.1|2194119|F20P5 F20P5.5 {Arabido... 28 9.0
>BU081671
Length = 421
Score = 56.6 bits (135), Expect = 2e-08
Identities = 32/73 (43%), Positives = 41/73 (55%), Gaps = 3/73 (4%)
Frame = +3
Query: 303 GRPSIDNSTTYEFDVTYSYSDCKIRCWKNCSCNGFQLY-YSNMTGCVFLSWNSTQYVDMV 361
G PS N +Y + +Y SDC+ CWKNCSC + Y +N TGC F WNST+ ++
Sbjct: 6 GYPST-NMESYLANSSYGPSDCQDICWKNCSCIAYSDYDGNNETGCTFYHWNSTKGTNLA 182
Query: 362 PD--KFYTLVKTT 372
KF LVK T
Sbjct: 183 SGGMKFRLLVKNT 221
>BE554879
Length = 416
Score = 53.1 bits (126), Expect = 2e-07
Identities = 23/48 (47%), Positives = 32/48 (65%)
Frame = +1
Query: 6 IKKQVVLIYLWLWWNTTANICVEATSDSLKPGDKLNYKSKLCSKQGKF 53
+ K + ++LWLWW+T I V+A +D LKPGD LN+ L SK GK+
Sbjct: 175 VLKLLAFVFLWLWWSTC--IHVKAENDRLKPGDSLNFSQSLISKSGKY 312
>BI471312 weakly similar to PIR|T07816|T078 S-locus-specific glycoprotein S7
- radish (fragment), partial (16%)
Length = 351
Score = 43.1 bits (100), Expect = 2e-04
Identities = 33/103 (32%), Positives = 53/103 (51%), Gaps = 12/103 (11%)
Frame = +3
Query: 150 LWQSFDYPSDVLIPMMKLGVNRKTGHNWSLVSDKFNLEWEPKQGELN----IKKSGKVYW 205
LWQSFDYPS+ ++ MK+G + K N L++ + + +P GEL+ + ++Y
Sbjct: 39 LWQSFDYPSNTMLAGMKIGWDHKRKLNRRLIA--WKSDDDPTPGELSWEVVLHPYPEIYM 212
Query: 206 KSGKLKS------NGL-FENIP-ANVQSRYQYIIVSNKDEDSF 240
GK K NGL F +P + Y VSN++E ++
Sbjct: 213 MRGKEKHHRLGPWNGLRFSGMPEMKPNPVFHYKFVSNEEEVTY 341
>CF922064
Length = 740
Score = 38.9 bits (89), Expect = 0.004
Identities = 42/187 (22%), Positives = 62/187 (32%), Gaps = 53/187 (28%)
Frame = -1
Query: 204 YWKSGKLKSNGLFENIPA-NVQSRYQYIIVSNKDEDSFTFEVKDGKFAQ----------- 251
Y++SG G F IP+ + S Y IVSNKDE T+ + D
Sbjct: 719 YYRSGPWDGIG-FSGIPSVSSDSNTNYTIVSNKDEFYITYSLIDKSLISRVVMNQTRYAR 543
Query: 252 ----WELSSKGKLVGDDGYIANADMCYGYNSDG--------------------------- 280
W + S+ V + D C YN G
Sbjct: 542 QRLAWNIDSQTWRVSSE---LPTDFCDQYNICGAFGICVIGQAPACKCLDGFKPKSPRNW 372
Query: 281 -------GC---QKWEDIPTCREPGEMFQKKAGRPSIDNSTTYEFDVTYSYSDCKIRCWK 330
GC Q W +CR+ G K + ++ + + +CK +CW+
Sbjct: 371 TQMSWNQGCVHNQTW----SCRKKGRDGFNKFSNVKVPDTRRSWVNANMTLDECKNKCWE 204
Query: 331 NCSCNGF 337
NCSC +
Sbjct: 203 NCSCTAY 183
>BE211320 weakly similar to GP|1272351|gb|A receptor protein kinase 2
{Ipomoea trifida}, partial (27%)
Length = 452
Score = 35.4 bits (80), Expect = 0.043
Identities = 16/30 (53%), Positives = 19/30 (63%)
Frame = +1
Query: 128 ATMLDAGNFVLQQFLPNGSMSVLWQSFDYP 157
A +L GNFV++ SVLWQSFDYP
Sbjct: 136 ARLLGLGNFVVRNGQETNEDSVLWQSFDYP 225
>BG043094 similar to PIR|T14450|T144 serine/threonine kinase (EC 2.7.1.-)
BRLK - wild cabbage, partial (6%)
Length = 413
Score = 33.9 bits (76), Expect = 0.13
Identities = 33/112 (29%), Positives = 56/112 (49%), Gaps = 2/112 (1%)
Frame = +2
Query: 5 EIKKQVVLIYLWLWWNTTANICVEATSDSLKPGDKL-NYKSKLCSKQGKFCLQFGNNSNS 63
E+ +V++ + + + IC AT+D++ G L + + L SK G F L F N +S
Sbjct: 23 EMAIPLVILLICKLLSLFSQICY-ATTDTITKGQPLPDDGNTLLSKDGTFELGFFNPGSS 199
Query: 64 DFQCLFISV-NADYGKVVWVYDINHSIDFNTSVLSLDYSGVLKIESQNRKPI 114
+ + + I N VVW+ + ++ I N+S L + G L + SQN I
Sbjct: 200 NNRYVGIWYKNIVVKTVVWIANRDNPIRNNSSKLVISQDGNLVLLSQNESLI 355
>BE806056 similar to PIR|S10930|S109 S-receptor kinase (EC 2.7.1.-) homolog
PK1 precursor - maize, partial (3%)
Length = 414
Score = 33.5 bits (75), Expect = 0.16
Identities = 22/71 (30%), Positives = 34/71 (46%), Gaps = 4/71 (5%)
Frame = +1
Query: 149 VLWQSFDYPSDVLIPMMKLGVN---RKTGHNWSLVSDKFNLEWEPKQGELNIK-KSGKVY 204
++WQSFD PSD L+P L N R + + + + L G L + +SG +Y
Sbjct: 19 IIWQSFDTPSDTLLPGQSLFANEMLRAATASKNSKASYYTLHMN-ASGHLELHWESGVIY 195
Query: 205 WKSGKLKSNGL 215
W S ++ L
Sbjct: 196 WTSENPSASNL 228
>BQ611251
Length = 445
Score = 31.2 bits (69), Expect = 0.81
Identities = 15/42 (35%), Positives = 19/42 (44%)
Frame = -2
Query: 306 SIDNSTTYEFDVTYSYSDCKIRCWKNCSCNGFQLYYSNMTGC 347
+I N T F T+ S KI CW C C+ Y + GC
Sbjct: 318 AIQN*YTVLFLSTWYQSLSKIHCWATCICHTLHTYSTEHEGC 193
>AW234696
Length = 411
Score = 31.2 bits (69), Expect = 0.81
Identities = 27/120 (22%), Positives = 50/120 (41%), Gaps = 12/120 (10%)
Frame = +1
Query: 60 NSNSDFQCLFISVN------------ADYGKVVWVYDINHSIDFNTSVLSLDYSGVLKIE 107
+SN DF F V ++ V+W+ + + ++ S LSL G + +
Sbjct: 52 SSNGDFSAGFFQVGDNAFCFSVWFTRSERPTVLWMANRDKPVNGRGSHLSLWKDGNVVLT 231
Query: 108 SQNRKPIIIYSSPQPTNNTVATMLDAGNFVLQQFLPNGSMSVLWQSFDYPSDVLIPMMKL 167
I ++ + + + GN VL + +++WQSFD P+D L+ + L
Sbjct: 232 DAGGTIIWATATLSSSQQLHLKLRNNGNLVLLASKSTNT-TIIWQSFDSPTDTLLTLQPL 408
>TC228608 similar to UP|Q940G7 (Q940G7) G protein-coupled receptor-like
protein, partial (69%)
Length = 1540
Score = 30.8 bits (68), Expect = 1.1
Identities = 18/68 (26%), Positives = 34/68 (49%)
Frame = +1
Query: 199 KSGKVYWKSGKLKSNGLFENIPANVQSRYQYIIVSNKDEDSFTFEVKDGKFAQWELSSKG 258
++G+V WKSG +K GL + + N Y ++ + ++S +E + FA + +
Sbjct: 988 EAGEVVWKSGLVKKVGLADGVSGNA---YAFLSLYRLTKESI-YEERAKSFASFLYDNAK 1155
Query: 259 KLVGDDGY 266
L +GY
Sbjct: 1156 SLAAANGY 1179
>BQ453284
Length = 317
Score = 30.4 bits (67), Expect = 1.4
Identities = 11/15 (73%), Positives = 12/15 (79%)
Frame = +1
Query: 267 IANADMCYGYNSDGG 281
I AD CYGYN+DGG
Sbjct: 178 IGRADTCYGYNTDGG 222
>TC210533 weakly similar to GB|AAB61094.1|2194119|F20P5 F20P5.5 {Arabidopsis
thaliana;} , partial (14%)
Length = 458
Score = 30.0 bits (66), Expect = 1.8
Identities = 11/23 (47%), Positives = 15/23 (64%)
Frame = -1
Query: 332 CSCNGFQLYYSNMTGCVFLSWNS 354
CSC+ FQ N+T CV+ SW +
Sbjct: 281 CSCHVFQHLEKNLTPCVYRSWQT 213
>TC213940 weakly similar to UP|Q70I30 (Q70I30) S-receptor kinase-like protein
1, partial (11%)
Length = 503
Score = 30.0 bits (66), Expect = 1.8
Identities = 18/65 (27%), Positives = 28/65 (42%), Gaps = 1/65 (1%)
Frame = +3
Query: 291 CREPG-EMFQKKAGRPSIDNSTTYEFDVTYSYSDCKIRCWKNCSCNGFQLYYSNMTGCVF 349
C + G + FQK G D S+++ + +C+ C NCSC + + G
Sbjct: 240 CNKGGIDKFQKYKGMKLPDTSSSWYDRTITTLLECEKLCLSNCSCTAYAQLNISGEGSGC 419
Query: 350 LSWNS 354
L W S
Sbjct: 420 LHWFS 434
>TC220920 similar to UP|O65001 (O65001) Terminal ear1, partial (9%)
Length = 577
Score = 29.6 bits (65), Expect = 2.4
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = -2
Query: 181 SDKFNLEWEPKQGELNIKKSGKVYWKSGK 209
SDKFN + ++ ++ IKK K YW+ G+
Sbjct: 510 SDKFNFTRQKQETKIFIKKKVKRYWRKGE 424
>BE803382
Length = 435
Score = 29.6 bits (65), Expect = 2.4
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = -1
Query: 146 SMSVLWQSFDYPSDVLIPMMKLGVNRKTGHNWSLVSDKFNLEWEPKQGELN-IKKSGKVY 204
+MSVLW++ YP+ + L + GHNW +D+ W ++G+ + +K G
Sbjct: 267 TMSVLWRA-KYPTKIFHIAPYLTHLPECGHNWCCGTDQRPWRWPGRRGQRSRRRKCGPWA 91
Query: 205 W 205
W
Sbjct: 90 W 88
>TC226015 similar to UP|Q39436 (Q39436) SIEP1L protein precursor, partial
(67%)
Length = 1490
Score = 28.9 bits (63), Expect = 4.0
Identities = 23/84 (27%), Positives = 38/84 (44%), Gaps = 2/84 (2%)
Frame = +3
Query: 81 WVYDINHSIDFN-TSVLSLDYSGVLKIESQNRKPIIIYSSPQPTNNTVA-TMLDAGNFVL 138
WV++ N + + SL G L + + + I + + VA +L GN VL
Sbjct: 285 WVWEANRANPVGENATFSLGTDGNLVLADADGR--IAWQTNTANKGVVAFRLLSNGNMVL 458
Query: 139 QQFLPNGSMSVLWQSFDYPSDVLI 162
+ +WQSFD+P+D L+
Sbjct: 459 L----DAQGGFVWQSFDHPTDTLL 518
>TC216094 similar to UP|Q6SJQ9 (Q6SJQ9) TFIID component TAF2 (Fragment),
partial (20%)
Length = 2400
Score = 28.1 bits (61), Expect = 6.9
Identities = 17/52 (32%), Positives = 26/52 (49%)
Frame = -2
Query: 44 SKLCSKQGKFCLQFGNNSNSDFQCLFISVNADYGKVVWVYDINHSIDFNTSV 95
+KL S F + NN+NS + L + K+VW++ N SI +T V
Sbjct: 254 NKLDSLSWAFLVSSSNNNNSMWNSLKNKILGKVMKIVWLWQSNVSIKPSTLV 99
>TC232282 similar to UP|Q84XK3 (Q84XK3) S-related kinase 8 (Fragment),
partial (10%)
Length = 1030
Score = 27.7 bits (60), Expect = 9.0
Identities = 15/58 (25%), Positives = 25/58 (42%), Gaps = 1/58 (1%)
Frame = +3
Query: 308 DNSTTYEFDVTYSYSDCKIRCWKNCSCNGFQLYYSNMTGCVFLSWNSTQY-VDMVPDK 364
D TY D + CK +C K+CSC + + G + W + + + PD+
Sbjct: 465 DTKRTY-VDESIDLEQCKTKCLKDCSCMAYTNTNISGAGSGCVMWFGELFDIKLFPDR 635
>TC208115 similar to UP|Q7Y1X6 (Q7Y1X6) ROS1 (Fragment), partial (15%)
Length = 863
Score = 27.7 bits (60), Expect = 9.0
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = -2
Query: 54 CLQFGNNSNSDFQCLFISVNADYGKVVWVY 83
C+Q GN + D +C F+SV + ++ W++
Sbjct: 787 CMQLGNTAWDDEKCSFVSVGNQF-RLFWIW 701
>TC221852 similar to GB|AAB61094.1|2194119|F20P5 F20P5.5 {Arabidopsis
thaliana;} , partial (13%)
Length = 825
Score = 27.7 bits (60), Expect = 9.0
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = -2
Query: 332 CSCNGFQLYYSNMTGCVFLSWNS 354
CSC+ FQ ++T C++ SW +
Sbjct: 632 CSCHVFQHLEKDLTPCIYRSWQA 564
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.317 0.134 0.423
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,395,988
Number of Sequences: 63676
Number of extensions: 324012
Number of successful extensions: 1812
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 1795
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1808
length of query: 381
length of database: 12,639,632
effective HSP length: 99
effective length of query: 282
effective length of database: 6,335,708
effective search space: 1786669656
effective search space used: 1786669656
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)
Medicago: description of AC140024.11